Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47155 * 2 1 4 4 C 1.53003 * 109.47283 * 119.99715 * 2 1 3 5 5 N 1.46897 * 109.47569 * 177.18588 * 4 2 1 6 6 C 1.46903 * 111.00062 * 287.75300 * 5 4 2 7 7 C 1.50698 * 109.47161 * 160.44596 * 6 5 4 8 8 H 1.07996 * 119.99966 * 4.92739 * 7 6 5 9 9 C 1.37880 * 119.99677 * 184.91847 * 7 6 5 10 10 N 1.31517 * 119.99444 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00120 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46812 * 89.99905 * 11 9 7 13 13 H 1.48500 * 109.47329 * 209.99477 * 11 9 7 14 14 H 1.48494 * 109.47228 * 329.99754 * 11 9 7 15 15 C 1.46898 * 111.00194 * 163.79463 * 5 4 2 16 16 C 1.50699 * 109.47375 * 293.95351 * 15 5 4 17 17 O 1.21279 * 119.99782 * 0.02562 * 16 15 5 18 18 N 1.34775 * 120.00143 * 179.97438 * 16 15 5 19 19 C 1.46491 * 120.00151 * 180.02562 * 18 16 15 20 20 C 1.54269 * 110.03169 * 272.90884 * 19 18 16 21 21 C 1.54963 * 104.15946 * 217.13664 * 20 19 18 22 22 C 1.54881 * 102.77928 * 37.88837 * 21 20 19 23 23 C 1.53879 * 110.03581 * 155.69089 * 19 18 16 24 24 H 1.09003 * 109.47005 * 300.00494 * 1 2 3 25 25 H 1.09002 * 109.46917 * 60.00102 * 1 2 3 26 26 H 1.08996 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47568 * 239.99863 * 2 1 3 28 28 H 1.09000 * 109.46995 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46751 * 299.99410 * 3 2 1 30 30 H 1.08994 * 109.47422 * 59.99791 * 3 2 1 31 31 H 1.08997 * 109.47123 * 57.18277 * 4 2 1 32 32 H 1.09005 * 109.46792 * 297.18984 * 4 2 1 33 33 H 1.08993 * 109.46944 * 280.45042 * 6 5 4 34 34 H 1.09001 * 109.46659 * 40.44701 * 6 5 4 35 35 H 0.97005 * 119.99386 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.46990 * 173.95576 * 15 5 4 37 37 H 1.08994 * 109.46931 * 53.95621 * 15 5 4 38 38 H 0.96998 * 119.99459 * 0.27932 * 18 16 15 39 39 H 1.09001 * 110.02145 * 34.29968 * 19 18 16 40 40 H 1.09000 * 110.48612 * 335.78572 * 20 19 18 41 41 H 1.09003 * 110.48699 * 98.42534 * 20 19 18 42 42 H 1.09005 * 110.71866 * 279.57191 * 21 20 19 43 43 H 1.09004 * 110.92239 * 156.30204 * 21 20 19 44 44 H 1.08999 * 110.48679 * 203.40574 * 22 21 20 45 45 H 1.08999 * 110.60195 * 80.81495 * 22 21 20 46 46 H 1.08992 * 110.03053 * 238.56719 * 23 19 18 47 47 H 1.09001 * 110.02933 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5074 -0.7804 1.2158 6 6 3.9727 -1.7390 0.2046 7 6 5.4082 -1.4426 -0.1456 8 1 5.9477 -0.6763 0.3910 9 6 6.0327 -2.1500 -1.1509 10 7 7.2856 -1.8917 -1.4562 11 14 5.0992 -3.4752 -2.0793 12 1 4.4278 -2.8733 -3.2592 13 1 6.0478 -4.5245 -2.5314 14 1 4.0799 -4.0812 -1.1855 15 6 4.0515 -1.1071 2.5407 16 6 3.7600 0.0216 3.4957 17 8 3.1578 1.0014 3.1108 18 7 4.1675 -0.0583 4.7779 19 6 3.8836 1.0386 5.7065 20 6 5.0008 2.0996 5.6283 21 6 5.1695 2.5809 7.0916 22 6 4.9856 1.2757 7.9049 23 6 3.8735 0.5152 7.1534 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6361 -1.7332 1.2750 32 1 1.7184 -0.1790 2.1385 33 1 3.8971 -2.7512 0.6016 34 1 3.3552 -1.6523 -0.6894 35 1 7.7248 -2.3891 -2.1637 36 1 5.1294 -1.2501 2.4656 37 1 3.5882 -2.0227 2.9080 38 1 4.6520 -0.8405 5.0849 39 1 2.9215 1.4911 5.4665 40 1 5.9262 1.6531 5.2646 41 1 4.6972 2.9267 4.9864 42 1 4.3998 3.3085 7.3494 43 1 6.1633 2.9992 7.2516 44 1 4.6714 1.5022 8.9237 45 1 5.9078 0.6947 7.9113 46 1 2.9069 0.7144 7.6158 47 1 4.0803 -0.5550 7.1648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049800757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = -50.980799 kcal Electronic energy + Delta-G solvation = -23306.886537 eV Core-core repulsion = 20102.841728 eV Total energy + Delta-G solvation = -3204.044808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78319 -38.02381 -36.69357 -33.97934 -33.39807 -32.30759 -28.89900 -28.84001 -27.73028 -26.55926 -26.33518 -23.64052 -21.34181 -20.83358 -20.26214 -20.01650 -19.01275 -16.89904 -16.80723 -16.27577 -15.39328 -15.06329 -14.77829 -14.61551 -14.22536 -13.93168 -13.63117 -13.49776 -13.10018 -12.88006 -12.48748 -12.36419 -12.08875 -11.74456 -11.72473 -11.62828 -11.32974 -11.27689 -11.21516 -11.18293 -10.84845 -10.76307 -10.68992 -10.49357 -10.32087 -10.19434 -9.94999 -9.84924 -9.26425 -9.11609 -8.78408 -8.54254 -7.29202 -6.03868 -4.00487 3.09913 3.28679 3.35980 3.38126 3.40586 4.41182 4.42854 4.50858 4.71424 4.81135 5.20691 5.27671 5.29100 5.36585 5.42450 5.43002 5.47005 5.51594 5.52090 5.64599 5.72855 5.74433 5.84701 5.90345 5.97114 6.06061 6.09429 6.16573 6.18393 6.22882 6.26007 6.33179 6.43848 6.56482 6.67119 6.74702 6.84849 6.87716 7.01962 7.24652 7.63186 7.72462 7.95592 8.06005 8.65497 8.70046 9.06122 9.58357 11.09391 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.004635 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.275797 B = 6039.004597 C = 7175.540733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.058 3.942 5 N -0.505 5.505 6 C 0.162 3.838 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.045 3.955 16 C 0.514 3.486 17 O -0.519 6.519 18 N -0.736 5.736 19 C 0.143 3.857 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.131 4.131 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.076 0.924 33 H -0.013 1.013 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.113 0.887 37 H 0.047 0.953 38 H 0.397 0.603 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 3.458 16.299 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.183 4.183 4 C -0.070 4.070 5 N -0.229 5.229 6 C 0.036 3.964 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.087 4.087 16 C 0.301 3.699 17 O -0.393 6.393 18 N -0.390 5.390 19 C 0.038 3.962 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.169 4.169 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.005 0.995 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.231 0.769 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.476 4.576 15.729 18.444 hybrid contribution -0.365 -2.005 -0.255 2.054 sum -8.842 2.570 15.474 18.006 Atomic orbital electron populations 1.21815 0.96378 1.00747 1.01164 1.21044 0.93686 0.97795 0.98278 1.21576 1.03141 0.94318 0.99275 1.22221 0.88693 0.97059 0.99019 1.61600 1.06630 1.51508 1.03122 1.20253 0.97288 0.88546 0.90342 1.21032 0.94286 1.20424 1.18623 0.90207 1.24885 0.94767 0.96863 0.96722 1.69900 1.11170 1.41678 1.31194 0.86912 0.80056 0.82263 0.80815 1.20124 1.21269 1.19361 1.21885 1.03524 0.93309 0.89963 1.21007 0.78004 0.89011 0.81886 1.90639 1.39620 1.32748 1.76273 1.46257 1.60390 1.21907 1.10450 1.21516 0.99209 0.87483 0.87965 1.22819 0.99197 0.98881 0.96533 1.22487 1.01641 0.97103 0.95008 1.22348 0.98613 0.96568 0.98620 1.22437 0.99611 1.00351 0.94526 0.93126 0.93043 0.93516 0.91367 0.90756 0.94890 0.93395 0.96863 0.90560 0.99511 0.95183 0.92726 0.86894 0.93561 0.76911 0.89502 0.90965 0.91071 0.91504 0.91477 0.91685 0.91472 0.91051 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 2 C -0.09 -1.60 2.92 -90.62 -0.26 -1.87 16 3 C -0.13 -2.32 9.06 37.16 0.34 -1.99 16 4 C 0.06 1.09 3.93 -3.82 -0.02 1.08 16 5 N -0.50 -10.66 3.48 -237.52 -0.83 -11.49 16 6 C 0.16 3.87 3.65 -4.98 -0.02 3.85 16 7 C -0.51 -14.14 9.16 -34.44 -0.32 -14.45 16 8 H 0.08 2.45 7.89 -52.49 -0.41 2.04 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 11 Si 0.87 21.37 27.37 -169.99 -4.65 16.71 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.33 6.69 56.52 0.38 -5.96 16 15 C 0.04 0.81 5.27 -4.98 -0.03 0.78 16 16 C 0.51 8.61 7.38 -10.99 -0.08 8.52 16 17 O -0.52 -10.21 14.15 5.56 0.08 -10.13 16 18 N -0.74 -9.28 5.04 -52.72 -0.27 -9.55 16 19 C 0.14 1.63 3.23 -66.81 -0.22 1.42 16 20 C -0.14 -1.55 6.54 -25.03 -0.16 -1.71 16 21 C -0.12 -1.09 6.91 -24.70 -0.17 -1.26 16 22 C -0.12 -0.95 6.83 -25.08 -0.17 -1.12 16 23 C -0.13 -1.10 6.57 -25.61 -0.17 -1.27 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.33 6.48 -51.93 -0.34 0.99 16 28 H 0.07 1.60 7.69 -51.93 -0.40 1.20 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.01 0.24 8.05 -51.93 -0.42 -0.18 16 32 H 0.08 1.43 5.81 -51.93 -0.30 1.13 16 33 H -0.01 -0.30 7.40 -51.93 -0.38 -0.69 16 34 H 0.03 0.73 5.39 -51.93 -0.28 0.45 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.11 2.17 7.31 -51.93 -0.38 1.79 16 37 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.40 4.04 8.31 -40.82 -0.34 3.70 16 39 H 0.09 1.14 7.59 -51.93 -0.39 0.74 16 40 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.54 7.61 -51.93 -0.40 0.15 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -31.53 364.58 -9.12 -40.65 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.69 Total: 2.78 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.03 Total: -7.88 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.32 Total: -47.63 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.65 Total: 16.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.53 -9.12 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.329 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds