Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47155 * 2 1 4 4 C 1.53003 * 109.47283 * 119.99715 * 2 1 3 5 5 N 1.46897 * 109.47569 * 177.18588 * 4 2 1 6 6 C 1.46903 * 111.00062 * 287.75300 * 5 4 2 7 7 C 1.50698 * 109.47161 * 160.44596 * 6 5 4 8 8 H 1.07996 * 119.99966 * 4.92739 * 7 6 5 9 9 C 1.37880 * 119.99677 * 184.91847 * 7 6 5 10 10 N 1.31517 * 119.99444 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00120 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46812 * 89.99905 * 11 9 7 13 13 H 1.48500 * 109.47329 * 209.99477 * 11 9 7 14 14 H 1.48494 * 109.47228 * 329.99754 * 11 9 7 15 15 C 1.46898 * 111.00194 * 163.79463 * 5 4 2 16 16 C 1.50699 * 109.47375 * 293.95351 * 15 5 4 17 17 O 1.21279 * 119.99782 * 0.02562 * 16 15 5 18 18 N 1.34775 * 120.00143 * 179.97438 * 16 15 5 19 19 C 1.46491 * 120.00151 * 180.02562 * 18 16 15 20 20 C 1.54269 * 110.03169 * 272.90884 * 19 18 16 21 21 C 1.54963 * 104.15946 * 217.13664 * 20 19 18 22 22 C 1.54881 * 102.77928 * 37.88837 * 21 20 19 23 23 C 1.53879 * 110.03581 * 155.69089 * 19 18 16 24 24 H 1.09003 * 109.47005 * 300.00494 * 1 2 3 25 25 H 1.09002 * 109.46917 * 60.00102 * 1 2 3 26 26 H 1.08996 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47568 * 239.99863 * 2 1 3 28 28 H 1.09000 * 109.46995 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46751 * 299.99410 * 3 2 1 30 30 H 1.08994 * 109.47422 * 59.99791 * 3 2 1 31 31 H 1.08997 * 109.47123 * 57.18277 * 4 2 1 32 32 H 1.09005 * 109.46792 * 297.18984 * 4 2 1 33 33 H 1.08993 * 109.46944 * 280.45042 * 6 5 4 34 34 H 1.09001 * 109.46659 * 40.44701 * 6 5 4 35 35 H 0.97005 * 119.99386 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.46990 * 173.95576 * 15 5 4 37 37 H 1.08994 * 109.46931 * 53.95621 * 15 5 4 38 38 H 0.96998 * 119.99459 * 0.27932 * 18 16 15 39 39 H 1.09001 * 110.02145 * 34.29968 * 19 18 16 40 40 H 1.09000 * 110.48612 * 335.78572 * 20 19 18 41 41 H 1.09003 * 110.48699 * 98.42534 * 20 19 18 42 42 H 1.09005 * 110.71866 * 279.57191 * 21 20 19 43 43 H 1.09004 * 110.92239 * 156.30204 * 21 20 19 44 44 H 1.08999 * 110.48679 * 203.40574 * 22 21 20 45 45 H 1.08999 * 110.60195 * 80.81495 * 22 21 20 46 46 H 1.08992 * 110.03053 * 238.56719 * 23 19 18 47 47 H 1.09001 * 110.02933 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5074 -0.7804 1.2158 6 6 3.9727 -1.7390 0.2046 7 6 5.4082 -1.4426 -0.1456 8 1 5.9477 -0.6763 0.3910 9 6 6.0327 -2.1500 -1.1509 10 7 7.2856 -1.8917 -1.4562 11 14 5.0992 -3.4752 -2.0793 12 1 4.4278 -2.8733 -3.2592 13 1 6.0478 -4.5245 -2.5314 14 1 4.0799 -4.0812 -1.1855 15 6 4.0515 -1.1071 2.5407 16 6 3.7600 0.0216 3.4957 17 8 3.1578 1.0014 3.1108 18 7 4.1675 -0.0583 4.7779 19 6 3.8836 1.0386 5.7065 20 6 5.0008 2.0996 5.6283 21 6 5.1695 2.5809 7.0916 22 6 4.9856 1.2757 7.9049 23 6 3.8735 0.5152 7.1534 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6361 -1.7332 1.2750 32 1 1.7184 -0.1790 2.1385 33 1 3.8971 -2.7512 0.6016 34 1 3.3552 -1.6523 -0.6894 35 1 7.7248 -2.3891 -2.1637 36 1 5.1294 -1.2501 2.4656 37 1 3.5882 -2.0227 2.9080 38 1 4.6520 -0.8405 5.0849 39 1 2.9215 1.4911 5.4665 40 1 5.9262 1.6531 5.2646 41 1 4.6972 2.9267 4.9864 42 1 4.3998 3.3085 7.3494 43 1 6.1633 2.9992 7.2516 44 1 4.6714 1.5022 8.9237 45 1 5.9078 0.6947 7.9113 46 1 2.9069 0.7144 7.6158 47 1 4.0803 -0.5550 7.1648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = -71.349065 kcal Electronic energy + Delta-G solvation = -23307.769771 eV Core-core repulsion = 20102.841728 eV Total energy + Delta-G solvation = -3204.928043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04781 -39.20316 -38.03835 -35.58843 -34.55440 -34.35059 -30.50437 -29.63424 -29.24153 -27.86497 -27.58151 -25.38033 -22.99426 -21.67788 -21.27779 -21.21351 -20.54684 -19.00286 -18.13235 -17.34994 -16.63540 -16.51886 -16.07021 -16.00890 -15.82645 -15.35621 -14.93419 -14.60632 -14.43380 -14.25848 -14.22179 -13.85357 -13.56020 -13.18019 -13.01532 -12.88656 -12.71890 -12.47275 -12.44351 -12.25089 -12.00891 -11.94238 -11.91911 -11.75447 -11.72763 -11.67219 -11.48957 -11.42073 -11.25937 -10.75467 -10.54065 -9.94623 -8.91944 -8.25481 -6.27808 1.36401 1.37059 1.47621 1.74094 2.21168 2.36138 3.07543 3.27881 3.61494 3.73204 3.93899 4.01125 4.05874 4.16014 4.34974 4.42373 4.47479 4.51709 4.54953 4.58137 4.65516 4.69166 4.77297 4.79761 4.87002 4.91791 4.92884 4.94556 5.01767 5.05958 5.11217 5.18953 5.19480 5.24448 5.30021 5.31374 5.46564 5.52372 5.60146 5.66369 5.71848 6.03405 6.31165 6.66804 6.69874 6.77911 7.35246 7.39545 8.91407 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.004635 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.275797 B = 6039.004597 C = 7175.540733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C -0.116 4.116 4 C 0.063 3.937 5 N -0.527 5.527 6 C 0.175 3.825 7 C -0.508 4.508 8 H 0.034 0.966 9 C 0.011 3.989 10 N -0.948 5.948 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.248 1.248 15 C 0.044 3.956 16 C 0.516 3.484 17 O -0.553 6.553 18 N -0.718 5.718 19 C 0.140 3.860 20 C -0.139 4.139 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.123 4.123 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.077 0.923 33 H -0.006 1.006 34 H 0.030 0.970 35 H 0.266 0.734 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 2.100 17.721 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 C -0.173 4.173 4 C -0.064 4.064 5 N -0.251 5.251 6 C 0.048 3.952 7 C -0.547 4.547 8 H 0.052 0.948 9 C -0.187 4.187 10 N -0.589 5.589 11 Si 0.767 3.233 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.172 1.172 15 C -0.087 4.087 16 C 0.303 3.697 17 O -0.430 6.430 18 N -0.372 5.372 19 C 0.035 3.965 20 C -0.178 4.178 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.012 0.988 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.247 0.753 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.617 3.208 17.210 20.475 hybrid contribution 0.380 -1.470 -0.627 1.643 sum -10.237 1.738 16.582 19.565 Atomic orbital electron populations 1.21728 0.93253 1.01985 1.02226 1.21092 0.96299 0.96650 0.97117 1.21446 1.00393 0.95438 1.00031 1.22230 0.86925 0.97795 0.99483 1.61450 1.08510 1.51081 1.04051 1.19971 0.94554 0.89331 0.91349 1.21208 0.96276 1.19050 1.18152 0.94794 1.25787 0.95591 0.99524 0.97760 1.70058 1.13189 1.43439 1.32258 0.85776 0.79002 0.79021 0.79517 1.19479 1.20725 1.17188 1.21871 1.02419 0.95128 0.89313 1.20759 0.77971 0.88080 0.82911 1.90624 1.41546 1.33699 1.77149 1.46120 1.59117 1.22730 1.09227 1.21664 0.98187 0.87072 0.89537 1.22794 0.98480 0.98206 0.98296 1.22474 1.02321 0.98041 0.92865 1.22349 0.98527 0.95540 0.99193 1.22409 1.00710 1.01053 0.91931 0.92382 0.91703 0.92193 0.93047 0.94785 0.93173 0.93494 0.95616 0.90446 0.98815 0.95185 0.92535 0.88836 0.90944 0.75257 0.91252 0.92238 0.93442 0.90816 0.90831 0.89738 0.91080 0.89812 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.19 71.98 0.66 -2.89 16 2 C -0.09 -3.23 2.92 -10.79 -0.03 -3.26 16 3 C -0.12 -4.30 9.06 71.98 0.65 -3.65 16 4 C 0.06 2.31 3.93 86.30 0.34 2.65 16 5 N -0.53 -22.49 3.48 -905.39 -3.15 -25.64 16 6 C 0.17 8.36 3.65 85.56 0.31 8.67 16 7 C -0.51 -29.39 9.16 25.60 0.23 -29.16 16 8 H 0.03 2.21 7.89 -2.91 -0.02 2.19 16 9 C 0.01 0.61 5.47 84.65 0.46 1.07 16 10 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 11 Si 0.94 43.90 27.37 68.60 1.88 45.78 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 H -0.25 -10.66 6.69 99.48 0.67 -9.99 16 15 C 0.04 1.60 5.27 85.56 0.45 2.06 16 16 C 0.52 17.49 7.38 87.66 0.65 18.13 16 17 O -0.55 -22.33 14.15 -3.03 -0.04 -22.37 16 18 N -0.72 -17.78 5.04 -439.11 -2.21 -20.00 16 19 C 0.14 3.10 3.23 45.72 0.15 3.25 16 20 C -0.14 -3.22 6.54 31.70 0.21 -3.01 16 21 C -0.12 -1.92 6.91 31.91 0.22 -1.70 16 22 C -0.12 -1.50 6.83 31.67 0.22 -1.29 16 23 C -0.12 -1.77 6.57 31.32 0.21 -1.56 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.96 6.48 -2.39 -0.02 1.95 16 28 H 0.03 1.51 7.69 -2.39 -0.02 1.49 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 0.88 8.05 -2.39 -0.02 0.86 16 32 H 0.08 2.83 5.81 -2.38 -0.01 2.82 16 33 H -0.01 -0.27 7.40 -2.39 -0.02 -0.28 16 34 H 0.03 1.44 5.39 -2.39 -0.01 1.43 16 35 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 36 H 0.09 3.75 7.31 -2.39 -0.02 3.74 16 37 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 38 H 0.41 7.87 8.31 -92.71 -0.77 7.10 16 39 H 0.07 1.82 7.59 -2.39 -0.02 1.80 16 40 H 0.06 1.51 8.05 -2.39 -0.02 1.49 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.08 1.02 7.61 -2.39 -0.02 1.00 16 Total: -1.00 -70.91 364.58 1.61 -69.29 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.11 Total: 22.73 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.73 Total: -10.68 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -5.06 Total: -104.75 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.04 Total: -22.37 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -70.91 1.61 -69.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.056 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds