Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 C 1.53000 * 109.46815 * 120.00405 * 2 1 3 5 5 N 1.46897 * 109.47212 * 60.94206 * 4 2 1 6 6 C 1.46903 * 111.00067 * 73.57258 * 5 4 2 7 7 C 1.50699 * 109.46784 * 279.57413 * 6 5 4 8 8 H 1.08003 * 120.00224 * 3.00059 * 7 6 5 9 9 C 1.37879 * 119.99887 * 182.99324 * 7 6 5 10 10 N 1.31512 * 119.99882 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99906 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47069 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47082 * 119.99909 * 11 9 7 14 14 H 1.48501 * 109.47211 * 239.99974 * 11 9 7 15 15 C 1.46907 * 110.99653 * 197.52265 * 5 4 2 16 16 C 1.50703 * 109.47022 * 66.04672 * 15 5 4 17 17 O 1.21278 * 120.00188 * 359.97438 * 16 15 5 18 18 N 1.34780 * 119.99731 * 179.97438 * 16 15 5 19 19 C 1.46919 * 120.62889 * 359.72269 * 18 16 15 20 20 C 1.53634 * 108.54222 * 126.36941 * 19 18 16 21 21 C 1.53033 * 109.24070 * 54.85124 * 20 19 18 22 22 C 1.53037 * 109.54046 * 298.50953 * 21 20 19 23 23 C 1.46922 * 120.62853 * 180.02562 * 18 16 15 24 24 H 1.08996 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47354 * 299.99991 * 1 2 3 26 26 H 1.09002 * 109.47044 * 59.99906 * 1 2 3 27 27 H 1.09004 * 109.46788 * 239.99985 * 2 1 3 28 28 H 1.09000 * 109.46628 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47340 * 299.99948 * 3 2 1 30 30 H 1.08999 * 109.46849 * 60.00280 * 3 2 1 31 31 H 1.09003 * 109.46761 * 300.93828 * 4 2 1 32 32 H 1.09005 * 109.47009 * 180.94152 * 4 2 1 33 33 H 1.08997 * 109.47033 * 39.57647 * 6 5 4 34 34 H 1.08994 * 109.46889 * 159.57789 * 6 5 4 35 35 H 0.97001 * 119.99564 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.46762 * 186.04802 * 15 5 4 37 37 H 1.09001 * 109.47160 * 306.04649 * 15 5 4 38 38 H 1.09002 * 109.58713 * 246.19457 * 19 18 16 39 39 H 1.09004 * 109.59141 * 6.62429 * 19 18 16 40 40 H 1.08998 * 109.62976 * 294.86116 * 20 19 18 41 41 H 1.08998 * 109.45324 * 174.73750 * 20 19 18 42 42 H 1.09000 * 109.45823 * 178.49292 * 21 20 19 43 43 H 1.09000 * 109.46357 * 58.53267 * 21 20 19 44 44 H 1.08993 * 109.49993 * 301.42031 * 22 21 20 45 45 H 1.09000 * 109.49958 * 181.31528 * 22 21 20 46 46 H 1.09008 * 109.58468 * 353.37254 * 23 18 16 47 47 H 1.08992 * 109.58768 * 113.79725 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5690 -2.1127 1.2378 6 6 2.3032 -2.9090 0.2454 7 6 1.7268 -2.6597 -1.1245 8 1 0.9302 -1.9418 -1.2528 9 6 2.2166 -3.3480 -2.2142 10 7 3.1864 -4.2225 -2.0580 11 14 1.5026 -3.0385 -3.9124 12 1 0.4306 -2.0150 -3.8197 13 1 2.5738 -2.5520 -4.8186 14 1 0.9362 -4.3021 -4.4491 15 6 1.6705 -2.7138 2.5744 16 6 0.7156 -2.0197 3.5112 17 8 0.0194 -1.1132 3.1055 18 7 0.6353 -2.4063 4.7998 19 6 1.4677 -3.5067 5.3044 20 6 2.2368 -3.0112 6.5387 21 6 1.2439 -2.4545 7.5615 22 6 0.4940 -1.2672 6.9532 23 6 -0.2912 -1.7397 5.7250 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6629 -0.2173 2.1391 32 1 3.1299 -0.7068 1.2577 33 1 3.3546 -2.6217 0.2550 34 1 2.2134 -3.9672 0.4903 35 1 3.5311 -4.7065 -2.8247 36 1 1.4178 -3.7725 2.5167 37 1 2.6891 -2.6031 2.9462 38 1 0.8326 -4.3486 5.5800 39 1 2.1727 -3.8154 4.5325 40 1 2.9346 -2.2271 6.2449 41 1 2.7874 -3.8415 6.9808 42 1 1.7835 -2.1264 8.4500 43 1 0.5311 -3.2320 7.8363 44 1 1.2082 -0.4996 6.6555 45 1 -0.1962 -0.8566 7.6901 46 1 -0.7472 -0.8819 5.2305 47 1 -1.0665 -2.4407 6.0339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049800764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -41.056821 kcal Electronic energy + Delta-G solvation = -23810.267771 eV Core-core repulsion = 20606.653299 eV Total energy + Delta-G solvation = -3203.614472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02261 -37.74013 -36.48254 -33.61512 -32.85535 -32.43110 -31.23900 -28.16655 -26.64124 -26.24484 -25.16215 -23.91497 -23.08364 -21.28308 -20.50004 -18.94610 -18.72256 -17.04580 -16.31271 -15.57902 -15.39018 -14.81702 -14.65475 -14.48259 -14.16696 -14.08247 -13.70132 -13.45359 -13.11706 -12.80854 -12.59656 -12.41872 -12.28386 -12.09600 -11.53823 -11.48708 -11.35957 -11.14192 -11.10065 -10.94772 -10.81401 -10.71845 -10.64874 -10.48686 -10.02306 -9.96990 -9.79537 -9.63089 -9.00877 -8.96142 -8.49643 -8.33140 -7.17186 -5.97542 -3.95245 3.02134 3.10964 3.34969 3.42843 3.49119 4.46305 4.54885 4.64623 4.69375 4.88031 4.98573 5.08272 5.15240 5.35550 5.37371 5.38503 5.59185 5.65008 5.69652 5.71936 5.78144 5.83170 5.85044 5.86257 5.90817 5.95670 6.12824 6.14052 6.25986 6.42026 6.51542 6.61899 6.66245 6.78280 6.88955 6.97038 7.21665 7.32937 7.47447 7.54387 7.56498 7.94494 8.14638 8.26835 8.54891 8.62573 9.13019 9.66850 11.13181 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.004534 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.975419 B = 6173.997614 C = 6894.024419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C -0.142 4.142 4 C 0.077 3.923 5 N -0.516 5.516 6 C 0.192 3.808 7 C -0.499 4.499 8 H 0.080 0.920 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.892 3.108 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.041 3.959 16 C 0.516 3.484 17 O -0.513 6.513 18 N -0.623 5.623 19 C 0.107 3.893 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.134 4.134 23 C 0.113 3.887 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.027 0.973 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.013 0.987 33 H -0.007 1.007 34 H 0.027 0.973 35 H 0.259 0.741 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 3.218 17.786 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.121 4.121 3 C -0.200 4.200 4 C -0.051 4.051 5 N -0.241 5.241 6 C 0.068 3.932 7 C -0.537 4.537 8 H 0.098 0.902 9 C -0.148 4.148 10 N -0.542 5.542 11 Si 0.720 3.280 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.091 4.091 16 C 0.304 3.696 17 O -0.387 6.387 18 N -0.360 5.360 19 C -0.016 4.016 20 C -0.174 4.174 21 C -0.156 4.156 22 C -0.172 4.172 23 C -0.010 4.010 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.011 0.989 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.891 3.598 17.288 17.893 hybrid contribution 0.706 -0.126 -0.556 0.907 sum -2.184 3.472 16.732 17.228 Atomic orbital electron populations 1.21556 0.95254 1.02573 0.98466 1.21366 0.96469 0.93664 1.00553 1.21826 1.00066 0.97733 1.00412 1.22024 0.95142 0.89431 0.98488 1.61855 1.58209 1.02123 1.01908 1.19846 0.91148 0.92311 0.89922 1.21471 1.19039 1.22398 0.90795 0.90197 1.24995 0.95296 0.95310 0.99186 1.69968 1.27270 1.26465 1.30516 0.86526 0.79080 0.78124 0.84303 1.19432 1.21245 1.21173 1.21967 0.95925 0.99631 0.91594 1.21007 0.83801 0.83426 0.81350 1.90654 1.43482 1.29451 1.75133 1.48199 1.41906 1.36200 1.09695 1.21801 0.94042 0.89047 0.96727 1.21997 0.98154 1.01345 0.95908 1.21503 0.98306 0.97927 0.97901 1.21919 0.99818 0.98190 0.97319 1.21484 0.91538 0.98220 0.89767 0.90952 0.94183 0.95386 0.87538 0.93696 0.93402 0.93954 0.91960 0.96881 0.98898 0.95530 0.93173 0.88593 0.93522 0.91486 0.89407 0.91473 0.90835 0.91940 0.91844 0.91634 0.91080 0.89089 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.40 37.16 0.31 -2.19 16 2 C -0.10 -2.11 2.40 -90.62 -0.22 -2.33 16 3 C -0.14 -2.48 9.19 37.16 0.34 -2.14 16 4 C 0.08 1.61 3.94 -3.83 -0.02 1.59 16 5 N -0.52 -11.28 3.44 -237.51 -0.82 -12.10 16 6 C 0.19 4.89 4.79 -4.97 -0.02 4.86 16 7 C -0.50 -13.65 7.25 -34.44 -0.25 -13.90 16 8 H 0.08 2.18 4.59 -52.48 -0.24 1.94 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 11 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.04 0.72 3.76 -4.97 -0.02 0.70 16 16 C 0.52 8.79 7.24 -10.98 -0.08 8.71 16 17 O -0.51 -10.38 13.92 5.56 0.08 -10.30 16 18 N -0.62 -8.16 2.97 -172.47 -0.51 -8.67 16 19 C 0.11 1.08 6.37 -3.48 -0.02 1.06 16 20 C -0.14 -1.13 6.10 -26.38 -0.16 -1.29 16 21 C -0.12 -0.92 5.88 -26.69 -0.16 -1.08 16 22 C -0.13 -1.20 6.08 -26.59 -0.16 -1.36 16 23 C 0.11 1.28 6.43 -3.69 -0.02 1.26 16 24 H 0.07 1.67 6.74 -51.93 -0.35 1.32 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.11 2.52 5.14 -51.93 -0.27 2.26 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.28 5.82 -51.93 -0.30 0.98 16 32 H 0.01 0.28 7.73 -51.93 -0.40 -0.13 16 33 H -0.01 -0.18 7.67 -51.93 -0.40 -0.58 16 34 H 0.03 0.71 7.65 -51.93 -0.40 0.31 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.10 1.63 7.59 -51.93 -0.39 1.24 16 37 H 0.05 0.77 7.68 -51.93 -0.40 0.37 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.89 5.93 -51.93 -0.31 0.58 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.21 7.01 -51.92 -0.36 0.84 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -30.91 355.47 -9.21 -40.12 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.45 Total: -0.68 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.57 Total: -4.73 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.59 Total: -46.45 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.91 -9.21 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.942 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds