Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 C 1.53000 * 109.46815 * 120.00405 * 2 1 3 5 5 N 1.46897 * 109.47212 * 60.94206 * 4 2 1 6 6 C 1.46903 * 111.00067 * 73.57258 * 5 4 2 7 7 C 1.50699 * 109.46784 * 279.57413 * 6 5 4 8 8 H 1.08003 * 120.00224 * 3.00059 * 7 6 5 9 9 C 1.37879 * 119.99887 * 182.99324 * 7 6 5 10 10 N 1.31512 * 119.99882 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99906 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47069 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47082 * 119.99909 * 11 9 7 14 14 H 1.48501 * 109.47211 * 239.99974 * 11 9 7 15 15 C 1.46907 * 110.99653 * 197.52265 * 5 4 2 16 16 C 1.50703 * 109.47022 * 66.04672 * 15 5 4 17 17 O 1.21278 * 120.00188 * 359.97438 * 16 15 5 18 18 N 1.34780 * 119.99731 * 179.97438 * 16 15 5 19 19 C 1.46919 * 120.62889 * 359.72269 * 18 16 15 20 20 C 1.53634 * 108.54222 * 126.36941 * 19 18 16 21 21 C 1.53033 * 109.24070 * 54.85124 * 20 19 18 22 22 C 1.53037 * 109.54046 * 298.50953 * 21 20 19 23 23 C 1.46922 * 120.62853 * 180.02562 * 18 16 15 24 24 H 1.08996 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47354 * 299.99991 * 1 2 3 26 26 H 1.09002 * 109.47044 * 59.99906 * 1 2 3 27 27 H 1.09004 * 109.46788 * 239.99985 * 2 1 3 28 28 H 1.09000 * 109.46628 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47340 * 299.99948 * 3 2 1 30 30 H 1.08999 * 109.46849 * 60.00280 * 3 2 1 31 31 H 1.09003 * 109.46761 * 300.93828 * 4 2 1 32 32 H 1.09005 * 109.47009 * 180.94152 * 4 2 1 33 33 H 1.08997 * 109.47033 * 39.57647 * 6 5 4 34 34 H 1.08994 * 109.46889 * 159.57789 * 6 5 4 35 35 H 0.97001 * 119.99564 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.46762 * 186.04802 * 15 5 4 37 37 H 1.09001 * 109.47160 * 306.04649 * 15 5 4 38 38 H 1.09002 * 109.58713 * 246.19457 * 19 18 16 39 39 H 1.09004 * 109.59141 * 6.62429 * 19 18 16 40 40 H 1.08998 * 109.62976 * 294.86116 * 20 19 18 41 41 H 1.08998 * 109.45324 * 174.73750 * 20 19 18 42 42 H 1.09000 * 109.45823 * 178.49292 * 21 20 19 43 43 H 1.09000 * 109.46357 * 58.53267 * 21 20 19 44 44 H 1.08993 * 109.49993 * 301.42031 * 22 21 20 45 45 H 1.09000 * 109.49958 * 181.31528 * 22 21 20 46 46 H 1.09008 * 109.58468 * 353.37254 * 23 18 16 47 47 H 1.08992 * 109.58768 * 113.79725 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5690 -2.1127 1.2378 6 6 2.3032 -2.9090 0.2454 7 6 1.7268 -2.6597 -1.1245 8 1 0.9302 -1.9418 -1.2528 9 6 2.2166 -3.3480 -2.2142 10 7 3.1864 -4.2225 -2.0580 11 14 1.5026 -3.0385 -3.9124 12 1 0.4306 -2.0150 -3.8197 13 1 2.5738 -2.5520 -4.8186 14 1 0.9362 -4.3021 -4.4491 15 6 1.6705 -2.7138 2.5744 16 6 0.7156 -2.0197 3.5112 17 8 0.0194 -1.1132 3.1055 18 7 0.6353 -2.4063 4.7998 19 6 1.4677 -3.5067 5.3044 20 6 2.2368 -3.0112 6.5387 21 6 1.2439 -2.4545 7.5615 22 6 0.4940 -1.2672 6.9532 23 6 -0.2912 -1.7397 5.7250 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6629 -0.2173 2.1391 32 1 3.1299 -0.7068 1.2577 33 1 3.3546 -2.6217 0.2550 34 1 2.2134 -3.9672 0.4903 35 1 3.5311 -4.7065 -2.8247 36 1 1.4178 -3.7725 2.5167 37 1 2.6891 -2.6031 2.9462 38 1 0.8326 -4.3486 5.5800 39 1 2.1727 -3.8154 4.5325 40 1 2.9346 -2.2271 6.2449 41 1 2.7874 -3.8415 6.9808 42 1 1.7835 -2.1264 8.4500 43 1 0.5311 -3.2320 7.8363 44 1 1.2082 -0.4996 6.6555 45 1 -0.1962 -0.8566 7.6901 46 1 -0.7472 -0.8819 5.2305 47 1 -1.0665 -2.4407 6.0339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = -59.147326 kcal Electronic energy + Delta-G solvation = -23811.052234 eV Core-core repulsion = 20606.653299 eV Total energy + Delta-G solvation = -3204.398936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24131 -39.09386 -37.86826 -35.27154 -34.54468 -33.78861 -32.10337 -29.90957 -28.32067 -27.80549 -26.35230 -25.46870 -24.07580 -22.84433 -21.59903 -20.63918 -19.83846 -18.58635 -18.03598 -16.81194 -16.80380 -16.56449 -16.13110 -15.54271 -15.45206 -15.23359 -14.87754 -14.65127 -14.51597 -14.09861 -14.07233 -13.94070 -13.88714 -13.24849 -13.14036 -13.06171 -12.82324 -12.69914 -12.58030 -12.35064 -12.18842 -11.87868 -11.81879 -11.66275 -11.59727 -11.47005 -11.44440 -11.34993 -10.92334 -10.54570 -10.44680 -9.56303 -8.94137 -8.12233 -6.16303 1.41589 1.43625 1.56412 1.68841 1.99934 2.45511 3.18428 3.31631 3.61573 3.88204 3.99932 4.04842 4.15328 4.18053 4.24450 4.35606 4.38281 4.39338 4.51674 4.57538 4.63527 4.74023 4.80330 4.86811 4.93120 4.94337 4.97829 5.07504 5.10077 5.14023 5.15623 5.17060 5.21114 5.24055 5.31419 5.42645 5.46216 5.63875 5.70875 5.80058 5.89800 6.13918 6.38035 6.44286 6.66506 6.97883 7.29453 7.49743 8.98385 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.004534 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.975419 B = 6173.997614 C = 6894.024419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.084 3.916 5 N -0.527 5.527 6 C 0.210 3.790 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.954 3.046 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.039 3.961 16 C 0.516 3.484 17 O -0.553 6.553 18 N -0.615 5.615 19 C 0.099 3.901 20 C -0.132 4.132 21 C -0.116 4.116 22 C -0.128 4.128 23 C 0.109 3.891 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.006 0.994 33 H -0.032 1.032 34 H 0.008 0.992 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 3.606 19.251 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.193 4.193 4 C -0.043 4.043 5 N -0.251 5.251 6 C 0.084 3.916 7 C -0.544 4.544 8 H 0.097 0.903 9 C -0.194 4.194 10 N -0.577 5.577 11 Si 0.780 3.220 12 H -0.189 1.189 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.092 4.092 16 C 0.304 3.696 17 O -0.430 6.430 18 N -0.350 5.350 19 C -0.024 4.024 20 C -0.170 4.170 21 C -0.153 4.153 22 C -0.166 4.166 23 C -0.013 4.013 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.025 0.975 33 H -0.014 1.014 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.346 3.972 18.810 19.514 hybrid contribution 0.844 -0.281 -0.890 1.258 sum -2.502 3.691 17.920 18.467 Atomic orbital electron populations 1.21395 0.95137 1.00796 0.99194 1.21323 0.96510 0.95580 0.98915 1.21740 1.00412 0.95404 1.01709 1.21978 0.94610 0.88901 0.98858 1.61746 1.57548 1.02417 1.03427 1.19495 0.89919 0.91597 0.90599 1.21756 1.18739 1.22002 0.91860 0.90329 1.25766 0.95669 0.95168 1.02840 1.70077 1.28569 1.27499 1.31596 0.85551 0.78481 0.78095 0.79899 1.18901 1.20694 1.20744 1.22008 0.97280 0.99826 0.90092 1.20742 0.83299 0.83045 0.82549 1.90631 1.45004 1.31193 1.76215 1.48231 1.41849 1.36351 1.08549 1.22086 0.94171 0.88631 0.97469 1.21986 0.98014 1.01788 0.95194 1.21512 0.98311 0.97533 0.97957 1.21884 0.99731 0.98479 0.96515 1.21653 0.91931 0.97748 0.90014 0.93923 0.93884 0.94036 0.90676 0.93134 0.92057 0.92678 0.91404 0.97541 1.01434 0.97378 0.93043 0.88102 0.92055 0.89599 0.89833 0.92683 0.88618 0.90436 0.90606 0.93082 0.89096 0.91407 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.40 71.98 0.60 -3.84 16 2 C -0.10 -4.34 2.40 -10.79 -0.03 -4.37 16 3 C -0.13 -4.51 9.19 71.98 0.66 -3.85 16 4 C 0.08 3.56 3.94 86.30 0.34 3.90 16 5 N -0.53 -23.63 3.44 -905.35 -3.12 -26.75 16 6 C 0.21 11.03 4.79 85.56 0.41 11.44 16 7 C -0.51 -28.31 7.25 25.60 0.19 -28.13 16 8 H 0.08 4.37 4.59 -2.91 -0.01 4.36 16 9 C 0.00 0.16 5.46 84.66 0.46 0.62 16 10 N -0.94 -55.83 13.29 21.45 0.28 -55.55 16 11 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 12 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 C 0.04 1.42 3.76 85.56 0.32 1.74 16 16 C 0.52 17.60 7.24 87.66 0.63 18.23 16 17 O -0.55 -22.66 13.92 -3.02 -0.04 -22.71 16 18 N -0.61 -15.50 2.97 -817.96 -2.43 -17.92 16 19 C 0.10 1.80 6.37 86.51 0.55 2.35 16 20 C -0.13 -1.86 6.10 30.82 0.19 -1.67 16 21 C -0.12 -1.41 5.88 30.62 0.18 -1.23 16 22 C -0.13 -2.01 6.08 30.69 0.19 -1.83 16 23 C 0.11 2.33 6.43 86.38 0.56 2.88 16 24 H 0.04 1.99 6.74 -2.39 -0.02 1.97 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 3.62 5.14 -2.38 -0.01 3.61 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.80 5.82 -2.39 -0.01 2.79 16 32 H 0.01 0.28 7.73 -2.38 -0.02 0.26 16 33 H -0.03 -1.81 7.67 -2.39 -0.02 -1.83 16 34 H 0.01 0.45 7.65 -2.39 -0.02 0.43 16 35 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.10 3.49 7.59 -2.39 -0.02 3.47 16 37 H 0.06 2.03 7.68 -2.39 -0.02 2.01 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.60 5.93 -2.38 -0.01 1.59 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.79 7.01 -2.38 -0.02 1.78 16 47 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -67.76 355.47 2.90 -64.86 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.92 Total: 14.84 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 5.26 Total: -3.74 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -5.26 Total: -100.21 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.04 Total: -22.71 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.76 2.90 -64.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.714 kcal (2) G-P(sol) polarization free energy of solvation -67.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds