Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47126 * 55.00263 * 4 3 2 6 6 C 1.52996 * 109.46884 * 175.00033 * 4 3 2 7 7 N 1.46498 * 109.46846 * 295.00052 * 4 3 2 8 8 C 1.34782 * 119.99778 * 154.72698 * 7 4 3 9 9 O 1.21282 * 119.99912 * 0.27550 * 8 7 4 10 10 C 1.50694 * 120.00083 * 180.27417 * 8 7 4 11 11 H 1.09004 * 109.50499 * 59.91973 * 10 8 7 12 12 C 1.53118 * 109.50565 * 299.79987 * 10 8 7 13 13 C 1.53119 * 109.16235 * 182.40271 * 12 10 8 14 14 C 1.53038 * 109.27581 * 57.65675 * 13 12 10 15 15 N 1.46839 * 109.52529 * 300.82063 * 14 13 12 16 16 C 1.46903 * 110.99965 * 185.84120 * 15 14 13 17 17 C 1.50700 * 109.46949 * 300.34033 * 16 15 14 18 18 H 1.08000 * 119.99681 * 4.83374 * 17 16 15 19 19 C 1.37870 * 119.99676 * 184.83228 * 17 16 15 20 20 N 1.31513 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99922 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47053 * 89.99861 * 21 19 17 23 23 H 1.48496 * 109.47259 * 210.00076 * 21 19 17 24 24 H 1.48498 * 109.47102 * 329.99955 * 21 19 17 25 25 C 1.46846 * 111.19800 * 61.74037 * 15 14 13 26 26 H 1.08993 * 109.47092 * 300.00014 * 1 2 3 27 27 H 1.09001 * 109.47234 * 59.99882 * 1 2 3 28 28 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47252 * 240.00194 * 2 1 3 30 30 H 1.09001 * 109.47234 * 120.00118 * 2 1 3 31 31 H 1.09002 * 109.46904 * 59.99981 * 3 2 1 32 32 H 1.09001 * 109.47168 * 300.00158 * 3 2 1 33 33 H 1.08997 * 109.47691 * 300.00077 * 6 4 3 34 34 H 1.09001 * 109.47479 * 60.00314 * 6 4 3 35 35 H 1.09006 * 109.47106 * 179.97438 * 6 4 3 36 36 H 0.96998 * 120.00628 * 334.99857 * 7 4 3 37 37 H 1.08995 * 109.52317 * 302.31542 * 12 10 8 38 38 H 1.09005 * 109.52062 * 62.49670 * 12 10 8 39 39 H 1.09000 * 109.50636 * 297.71348 * 13 12 10 40 40 H 1.08999 * 109.50157 * 177.59864 * 13 12 10 41 41 H 1.09005 * 109.45833 * 180.80265 * 14 13 12 42 42 H 1.09006 * 109.45191 * 60.83318 * 14 13 12 43 43 H 1.08999 * 109.47225 * 60.34305 * 16 15 14 44 44 H 1.09005 * 109.46572 * 180.34169 * 16 15 14 45 45 H 0.97007 * 120.00269 * 179.97438 * 20 19 17 46 46 H 1.09009 * 109.46207 * 178.24461 * 25 15 14 47 47 H 1.09002 * 109.46011 * 58.28127 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8533 -0.8427 6 6 4.0799 2.8795 -0.1264 7 7 4.0588 0.8586 1.2509 8 6 5.2786 0.2871 1.2966 9 8 5.9735 0.2607 0.3030 10 6 5.7789 -0.3190 2.5824 11 1 5.1029 -1.1141 2.8972 12 6 5.8400 0.7603 3.6667 13 6 6.4057 0.1500 4.9520 14 6 7.7882 -0.4404 4.6651 15 7 7.6761 -1.4680 3.6222 16 6 8.9594 -2.1534 3.4185 17 6 10.0053 -1.1495 3.0070 18 1 9.7636 -0.0972 2.9824 19 6 11.2707 -1.5745 2.6621 20 7 11.5648 -2.8560 2.6916 21 14 12.5674 -0.3302 2.1527 22 1 13.3164 0.1234 3.3521 23 1 13.5074 -0.9602 1.1911 24 1 11.9094 0.8356 1.5099 25 6 7.1796 -0.8958 2.3642 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.7162 3.3141 -1.0575 34 1 3.7169 3.4689 0.7157 35 1 5.1699 2.8796 -0.1264 36 1 3.5030 0.8797 2.0456 37 1 6.4852 1.5738 3.3349 38 1 4.8373 1.1436 3.8560 39 1 5.7397 -0.6374 5.3048 40 1 6.4916 0.9237 5.7150 41 1 8.1876 -0.8884 5.5750 42 1 8.4572 0.3503 4.3256 43 1 9.2646 -2.6365 4.3467 44 1 8.8497 -2.9050 2.6367 45 1 12.4551 -3.1551 2.4486 46 1 7.1370 -1.6748 1.6028 47 1 7.8517 -0.1032 2.0355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051056849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -68.355609 kcal Electronic energy + Delta-G solvation = -23173.799249 eV Core-core repulsion = 19969.001012 eV Total energy + Delta-G solvation = -3204.798237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06802 -37.95520 -36.59008 -33.85777 -33.44864 -31.91976 -30.99440 -30.02741 -26.94918 -26.69911 -24.03237 -23.66991 -21.99318 -21.50326 -20.96680 -20.18939 -19.09236 -16.90597 -16.44022 -16.26062 -15.20953 -14.88365 -14.82106 -14.32303 -14.31333 -14.10121 -13.67549 -13.48176 -13.22518 -12.98941 -12.77518 -12.61824 -12.37710 -12.33478 -12.09734 -11.72332 -11.62967 -11.18507 -11.06572 -10.98261 -10.95248 -10.84491 -10.80914 -10.51469 -10.36702 -10.14874 -10.07052 -9.74423 -9.48441 -9.29263 -9.00680 -8.37517 -7.13353 -5.97089 -4.05690 2.89856 3.26157 3.31891 3.38627 3.43197 4.41288 4.46397 4.70298 4.71558 4.85901 5.03411 5.10697 5.14019 5.18916 5.26667 5.33104 5.35312 5.36108 5.50327 5.55235 5.60556 5.63152 5.67966 5.78359 5.84905 5.88973 5.97048 6.03359 6.04646 6.13833 6.19707 6.22340 6.36817 6.54363 6.56669 6.71194 6.84724 6.95705 7.33986 7.57435 7.61238 7.95140 8.10726 8.31533 8.36308 8.46731 9.04090 9.61010 11.08070 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.003787 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.645327 B = 7391.228822 C = 7784.433188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.126 4.126 4 C 0.139 3.861 5 H 0.087 0.913 6 C -0.163 4.163 7 N -0.730 5.730 8 C 0.520 3.480 9 O -0.532 6.532 10 C -0.105 4.105 11 H 0.098 0.902 12 C -0.105 4.105 13 C -0.115 4.115 14 C 0.059 3.941 15 N -0.543 5.543 16 C 0.189 3.811 17 C -0.548 4.548 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.087 3.913 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.029 0.971 44 H 0.034 0.966 45 H 0.262 0.738 46 H 0.070 0.930 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.455 9.083 -1.129 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.163 4.163 4 C 0.035 3.965 5 H 0.105 0.895 6 C -0.222 4.222 7 N -0.384 5.384 8 C 0.306 3.694 9 O -0.407 6.407 10 C -0.126 4.126 11 H 0.116 0.884 12 C -0.143 4.143 13 C -0.153 4.153 14 C -0.069 4.069 15 N -0.267 5.267 16 C 0.063 3.937 17 C -0.587 4.587 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.042 4.042 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.125 8.568 -1.743 22.863 hybrid contribution 1.179 1.295 -0.246 1.769 sum -19.946 9.863 -1.989 22.340 Atomic orbital electron populations 1.21773 0.95877 1.01670 1.01615 1.21544 0.95640 0.96544 1.02675 1.21922 0.94063 0.97511 1.02849 1.20936 0.93133 0.94398 0.88056 0.89534 1.22177 1.02407 0.96008 1.01594 1.46142 1.18393 1.60665 1.13164 1.20890 0.80690 0.77099 0.90702 1.90712 1.55790 1.57383 1.36864 1.21431 1.00624 0.98634 0.91954 0.88410 1.21504 1.00459 0.97111 0.95215 1.21625 0.98225 0.99528 0.95931 1.21895 0.94339 0.94659 0.96042 1.62425 1.31190 1.26925 1.06125 1.19731 0.82925 0.93753 0.97278 1.21756 0.96845 0.94031 1.46030 0.92518 1.24947 0.98480 0.95064 0.95262 1.69942 1.20987 1.13668 1.48456 0.86657 0.81655 0.81688 0.78442 1.20680 1.21115 1.19922 1.21566 0.91070 0.98874 0.92703 0.92817 0.92869 0.92743 0.91857 0.91664 0.91493 0.90623 0.91955 0.92644 0.91891 0.76907 0.91970 0.92427 0.91583 0.92156 0.91590 0.94361 0.95288 0.94762 0.92861 0.91186 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.96 5.82 -26.73 -0.16 -1.12 16 3 C -0.13 -0.91 4.75 -26.73 -0.13 -1.03 16 4 C 0.14 1.41 2.58 -67.93 -0.17 1.24 16 5 H 0.09 1.08 7.57 -51.93 -0.39 0.68 16 6 C -0.16 -1.63 9.49 37.16 0.35 -1.28 16 7 N -0.73 -8.03 4.43 -53.81 -0.24 -8.27 16 8 C 0.52 8.03 7.12 -10.99 -0.08 7.95 16 9 O -0.53 -10.63 15.64 5.56 0.09 -10.54 16 10 C -0.10 -1.62 2.69 -91.69 -0.25 -1.87 16 11 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 12 C -0.10 -1.42 5.16 -26.61 -0.14 -1.55 16 13 C -0.12 -1.65 6.09 -26.65 -0.16 -1.82 16 14 C 0.06 1.14 5.04 -3.84 -0.02 1.12 16 15 N -0.54 -11.81 4.86 -236.11 -1.15 -12.96 16 16 C 0.19 4.98 5.12 -4.97 -0.03 4.96 16 17 C -0.55 -15.52 7.73 -34.44 -0.27 -15.79 16 18 H 0.06 1.61 5.85 -52.49 -0.31 1.30 16 19 C 0.06 1.88 5.46 -17.82 -0.10 1.78 16 20 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 21 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.09 1.81 3.69 -3.83 -0.01 1.80 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 3.33 8.08 -40.82 -0.33 3.00 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 42 H 0.04 0.81 6.57 -51.93 -0.34 0.47 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 1.57 8.06 -51.92 -0.42 1.16 16 47 H 0.05 1.09 6.97 -51.93 -0.36 0.72 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.05 366.76 -9.69 -41.74 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.85 Total: -0.31 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.78 Total: -6.22 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.65 Total: -47.37 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.05 -9.69 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.615 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds