Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47126 * 55.00263 * 4 3 2 6 6 C 1.52996 * 109.46884 * 175.00033 * 4 3 2 7 7 N 1.46498 * 109.46846 * 295.00052 * 4 3 2 8 8 C 1.34782 * 119.99778 * 154.72698 * 7 4 3 9 9 O 1.21282 * 119.99912 * 0.27550 * 8 7 4 10 10 C 1.50694 * 120.00083 * 180.27417 * 8 7 4 11 11 H 1.09004 * 109.50499 * 59.91973 * 10 8 7 12 12 C 1.53118 * 109.50565 * 299.79987 * 10 8 7 13 13 C 1.53119 * 109.16235 * 182.40271 * 12 10 8 14 14 C 1.53038 * 109.27581 * 57.65675 * 13 12 10 15 15 N 1.46839 * 109.52529 * 300.82063 * 14 13 12 16 16 C 1.46903 * 110.99965 * 185.84120 * 15 14 13 17 17 C 1.50700 * 109.46949 * 300.34033 * 16 15 14 18 18 H 1.08000 * 119.99681 * 4.83374 * 17 16 15 19 19 C 1.37870 * 119.99676 * 184.83228 * 17 16 15 20 20 N 1.31513 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99922 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47053 * 89.99861 * 21 19 17 23 23 H 1.48496 * 109.47259 * 210.00076 * 21 19 17 24 24 H 1.48498 * 109.47102 * 329.99955 * 21 19 17 25 25 C 1.46846 * 111.19800 * 61.74037 * 15 14 13 26 26 H 1.08993 * 109.47092 * 300.00014 * 1 2 3 27 27 H 1.09001 * 109.47234 * 59.99882 * 1 2 3 28 28 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47252 * 240.00194 * 2 1 3 30 30 H 1.09001 * 109.47234 * 120.00118 * 2 1 3 31 31 H 1.09002 * 109.46904 * 59.99981 * 3 2 1 32 32 H 1.09001 * 109.47168 * 300.00158 * 3 2 1 33 33 H 1.08997 * 109.47691 * 300.00077 * 6 4 3 34 34 H 1.09001 * 109.47479 * 60.00314 * 6 4 3 35 35 H 1.09006 * 109.47106 * 179.97438 * 6 4 3 36 36 H 0.96998 * 120.00628 * 334.99857 * 7 4 3 37 37 H 1.08995 * 109.52317 * 302.31542 * 12 10 8 38 38 H 1.09005 * 109.52062 * 62.49670 * 12 10 8 39 39 H 1.09000 * 109.50636 * 297.71348 * 13 12 10 40 40 H 1.08999 * 109.50157 * 177.59864 * 13 12 10 41 41 H 1.09005 * 109.45833 * 180.80265 * 14 13 12 42 42 H 1.09006 * 109.45191 * 60.83318 * 14 13 12 43 43 H 1.08999 * 109.47225 * 60.34305 * 16 15 14 44 44 H 1.09005 * 109.46572 * 180.34169 * 16 15 14 45 45 H 0.97007 * 120.00269 * 179.97438 * 20 19 17 46 46 H 1.09009 * 109.46207 * 178.24461 * 25 15 14 47 47 H 1.09002 * 109.46011 * 58.28127 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8533 -0.8427 6 6 4.0799 2.8795 -0.1264 7 7 4.0588 0.8586 1.2509 8 6 5.2786 0.2871 1.2966 9 8 5.9735 0.2607 0.3030 10 6 5.7789 -0.3190 2.5824 11 1 5.1029 -1.1141 2.8972 12 6 5.8400 0.7603 3.6667 13 6 6.4057 0.1500 4.9520 14 6 7.7882 -0.4404 4.6651 15 7 7.6761 -1.4680 3.6222 16 6 8.9594 -2.1534 3.4185 17 6 10.0053 -1.1495 3.0070 18 1 9.7636 -0.0972 2.9824 19 6 11.2707 -1.5745 2.6621 20 7 11.5648 -2.8560 2.6916 21 14 12.5674 -0.3302 2.1527 22 1 13.3164 0.1234 3.3521 23 1 13.5074 -0.9602 1.1911 24 1 11.9094 0.8356 1.5099 25 6 7.1796 -0.8958 2.3642 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.7162 3.3141 -1.0575 34 1 3.7169 3.4689 0.7157 35 1 5.1699 2.8796 -0.1264 36 1 3.5030 0.8797 2.0456 37 1 6.4852 1.5738 3.3349 38 1 4.8373 1.1436 3.8560 39 1 5.7397 -0.6374 5.3048 40 1 6.4916 0.9237 5.7150 41 1 8.1876 -0.8884 5.5750 42 1 8.4572 0.3503 4.3256 43 1 9.2646 -2.6365 4.3467 44 1 8.8497 -2.9050 2.6367 45 1 12.4551 -3.1551 2.4486 46 1 7.1370 -1.6748 1.6028 47 1 7.8517 -0.1032 2.0355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051056849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -90.300712 kcal Electronic energy + Delta-G solvation = -23174.750860 eV Core-core repulsion = 19969.001012 eV Total energy + Delta-G solvation = -3205.749848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32430 -39.38864 -37.61545 -35.57543 -34.45621 -33.71453 -32.22914 -31.21168 -28.75069 -27.56846 -25.78590 -25.12984 -23.15324 -22.74228 -21.81231 -21.46217 -20.59231 -18.51667 -18.09733 -17.43538 -16.77625 -16.28339 -15.88569 -15.79265 -15.51193 -15.26667 -15.01491 -14.79130 -14.49831 -14.40679 -14.05725 -13.70055 -13.56092 -13.36006 -13.16110 -13.02957 -12.91184 -12.88734 -12.40562 -12.38980 -12.29332 -12.20995 -11.85416 -11.83580 -11.73133 -11.62081 -11.55705 -11.47381 -11.12723 -10.67416 -10.60244 -10.04596 -9.07629 -8.19387 -6.38927 1.30722 1.32882 1.43275 1.66705 2.19996 2.33425 3.04886 3.36321 3.67856 3.74795 3.88960 4.01949 4.08331 4.12487 4.31672 4.33044 4.41232 4.50405 4.51222 4.64471 4.67501 4.77980 4.84011 4.88126 4.90517 4.93453 5.00433 5.03309 5.08800 5.10450 5.17391 5.20511 5.27962 5.29316 5.31703 5.32174 5.34969 5.48022 5.50804 5.63206 5.70461 6.01881 6.20487 6.51900 6.61613 6.81387 7.32052 7.33269 8.83102 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.003787 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.645327 B = 7391.228822 C = 7784.433188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.137 3.863 5 H 0.057 0.943 6 C -0.159 4.159 7 N -0.705 5.705 8 C 0.520 3.480 9 O -0.588 6.588 10 C -0.095 4.095 11 H 0.122 0.878 12 C -0.099 4.099 13 C -0.104 4.104 14 C 0.055 3.945 15 N -0.535 5.535 16 C 0.200 3.800 17 C -0.558 4.558 18 H 0.051 0.949 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.956 3.044 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.276 1.276 25 C 0.094 3.906 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.416 0.584 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.012 0.988 43 H 0.011 0.989 44 H 0.001 0.999 45 H 0.266 0.734 46 H 0.039 0.961 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.215 11.352 0.121 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.151 4.151 4 C 0.032 3.968 5 H 0.075 0.925 6 C -0.217 4.217 7 N -0.359 5.359 8 C 0.307 3.693 9 O -0.468 6.468 10 C -0.116 4.116 11 H 0.140 0.860 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.074 4.074 15 N -0.259 5.259 16 C 0.073 3.927 17 C -0.597 4.597 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.781 3.219 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.201 1.201 25 C -0.035 4.035 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.253 0.747 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.019 0.981 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -23.949 10.861 -0.455 26.301 hybrid contribution 2.000 0.556 -0.652 2.176 sum -21.949 11.417 -1.107 24.766 Atomic orbital electron populations 1.21743 0.94640 1.01825 1.02411 1.21549 0.96698 0.96644 1.01707 1.21862 0.91104 0.97566 1.04597 1.21052 0.95319 0.93959 0.86456 0.92469 1.22137 1.00085 0.96064 1.03458 1.45925 1.16778 1.58722 1.14429 1.20853 0.81593 0.77075 0.89772 1.90701 1.57701 1.59819 1.38587 1.21314 0.97105 1.00053 0.93141 0.86010 1.21543 1.03029 0.95579 0.93550 1.21588 0.94710 1.00701 0.97119 1.22047 0.97756 0.93078 0.94494 1.62388 1.28271 1.28082 1.07143 1.19399 0.85101 0.93209 0.94988 1.21973 0.97654 0.94042 1.46058 0.93077 1.25814 1.00755 0.97052 0.95220 1.70056 1.21755 1.15444 1.49205 0.85592 0.78836 0.78973 0.78548 1.19086 1.20315 1.20065 1.21415 0.94012 0.96640 0.91420 0.91689 0.92377 0.93000 0.93514 0.92108 0.89237 0.89301 0.90268 0.90627 0.95413 0.74677 0.93573 0.87228 0.89688 0.89065 0.92046 0.97009 0.97094 0.98090 0.92500 0.94223 0.97566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.13 -1.68 5.82 30.60 0.18 -1.50 16 3 C -0.11 -1.28 4.75 30.60 0.15 -1.13 16 4 C 0.14 2.56 2.58 44.99 0.12 2.67 16 5 H 0.06 1.44 7.57 -2.39 -0.02 1.43 16 6 C -0.16 -2.90 9.49 71.98 0.68 -2.21 16 7 N -0.71 -14.01 4.43 -442.55 -1.96 -15.97 16 8 C 0.52 15.94 7.12 87.65 0.62 16.56 16 9 O -0.59 -24.68 15.64 -3.04 -0.05 -24.73 16 10 C -0.09 -2.84 2.69 -11.49 -0.03 -2.87 16 11 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 12 C -0.10 -2.37 5.16 30.67 0.16 -2.21 16 13 C -0.10 -2.63 6.09 30.65 0.19 -2.45 16 14 C 0.05 2.10 5.04 86.33 0.43 2.53 16 15 N -0.54 -24.13 4.86 -900.91 -4.38 -28.51 16 16 C 0.20 11.19 5.12 85.56 0.44 11.63 16 17 C -0.56 -33.15 7.73 25.60 0.20 -32.95 16 18 H 0.05 3.04 5.85 -2.91 -0.02 3.02 16 19 C 0.01 0.66 5.46 84.65 0.46 1.12 16 20 N -0.92 -57.54 13.29 21.44 0.28 -57.26 16 21 Si 0.96 46.63 29.54 68.60 2.03 48.65 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 25 C 0.09 4.13 3.69 86.33 0.32 4.44 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.84 7.75 -2.39 -0.02 0.82 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.42 5.19 8.08 -92.71 -0.75 4.44 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.58 7.66 -2.38 -0.02 1.56 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 41 H 0.06 2.38 8.12 -2.38 -0.02 2.36 16 42 H 0.01 0.51 6.57 -2.38 -0.02 0.49 16 43 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.00 0.06 8.09 -2.38 -0.02 0.04 16 45 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 46 H 0.04 1.92 8.06 -2.38 -0.02 1.90 16 47 H 0.01 0.31 6.97 -2.39 -0.02 0.29 16 Total: -1.00 -75.95 366.76 0.72 -75.23 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.17 Total: 9.74 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 4.63 Total: -7.15 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -6.05 Total: -101.74 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -75.95 0.72 -75.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.073 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds