Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 C 1.53000 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47251 * 304.99608 * 4 3 2 6 6 C 1.53004 * 109.47192 * 184.99902 * 4 3 2 7 7 N 1.46498 * 109.47460 * 65.00007 * 4 3 2 8 8 C 1.34769 * 120.00363 * 204.99841 * 7 4 3 9 9 O 1.21284 * 120.00034 * 359.97438 * 8 7 4 10 10 C 1.50702 * 120.00242 * 179.97438 * 8 7 4 11 11 H 1.09002 * 109.50478 * 59.92742 * 10 8 7 12 12 C 1.53113 * 109.50402 * 299.80231 * 10 8 7 13 13 C 1.53124 * 109.16299 * 182.40527 * 12 10 8 14 14 C 1.53035 * 109.27742 * 57.65506 * 13 12 10 15 15 N 1.46843 * 109.52508 * 300.82383 * 14 13 12 16 16 C 1.46894 * 111.00234 * 185.84022 * 15 14 13 17 17 C 1.50700 * 109.47141 * 300.34389 * 16 15 14 18 18 H 1.08000 * 119.99934 * 4.83342 * 17 16 15 19 19 C 1.37877 * 120.00214 * 184.82895 * 17 16 15 20 20 N 1.31514 * 120.00054 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47012 * 60.00228 * 21 19 17 23 23 H 1.48496 * 109.46852 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47042 * 300.00040 * 21 19 17 25 25 C 1.46842 * 111.19978 * 61.73967 * 15 14 13 26 26 H 1.09002 * 109.46916 * 300.00352 * 1 2 3 27 27 H 1.08999 * 109.46854 * 59.99824 * 1 2 3 28 28 H 1.08996 * 109.47138 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46674 * 240.00121 * 2 1 3 30 30 H 1.08999 * 109.47380 * 120.00157 * 2 1 3 31 31 H 1.08994 * 109.47170 * 59.99942 * 3 2 1 32 32 H 1.09000 * 109.46883 * 299.99593 * 3 2 1 33 33 H 1.09003 * 109.46778 * 300.00000 * 6 4 3 34 34 H 1.08999 * 109.46858 * 59.99915 * 6 4 3 35 35 H 1.08997 * 109.47550 * 179.97438 * 6 4 3 36 36 H 0.97005 * 119.99983 * 25.00164 * 7 4 3 37 37 H 1.09004 * 109.52850 * 302.30834 * 12 10 8 38 38 H 1.09008 * 109.52345 * 62.50228 * 12 10 8 39 39 H 1.09008 * 109.49856 * 297.71475 * 13 12 10 40 40 H 1.08999 * 109.50351 * 177.60098 * 13 12 10 41 41 H 1.09000 * 109.46114 * 180.80353 * 14 13 12 42 42 H 1.08997 * 109.45253 * 60.83565 * 14 13 12 43 43 H 1.09004 * 109.47270 * 60.33856 * 16 15 14 44 44 H 1.09000 * 109.47230 * 180.34261 * 16 15 14 45 45 H 0.96996 * 120.00290 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46546 * 178.24180 * 25 15 14 47 47 H 1.09000 * 109.46283 * 58.27815 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0802 2.8794 0.1251 7 7 4.0579 0.8589 -1.2527 8 6 5.2797 0.2923 -1.3011 9 8 5.9757 0.2660 -0.3082 10 6 5.7813 -0.3085 -2.5889 11 1 5.8165 0.4611 -3.3601 12 6 4.8395 -1.4324 -3.0296 13 6 5.3885 -2.0768 -4.3056 14 6 6.8029 -2.5974 -4.0404 15 7 7.6652 -1.4847 -3.6226 16 6 9.0618 -1.9209 -3.4930 17 6 9.1512 -3.0217 -2.4677 18 1 8.2513 -3.4170 -2.0200 19 6 10.3817 -3.5244 -2.1013 20 7 11.4774 -3.0435 -2.6469 21 14 10.4924 -4.8885 -0.8299 22 1 9.7487 -6.0787 -1.3149 23 1 11.9166 -5.2486 -0.6131 24 1 9.9000 -4.4220 0.4495 25 6 7.1845 -0.8804 -2.3736 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7165 3.4689 -0.7166 34 1 3.7172 3.3136 1.0566 35 1 5.1702 2.8794 0.1251 36 1 3.5014 0.8803 -2.0470 37 1 4.7740 -2.1828 -2.2418 38 1 3.8491 -1.0217 -3.2261 39 1 5.4173 -1.3355 -5.1043 40 1 4.7449 -2.9056 -4.6006 41 1 7.2021 -3.0442 -4.9510 42 1 6.7713 -3.3485 -3.2512 43 1 9.4179 -2.2903 -4.4547 44 1 9.6776 -1.0789 -3.1766 45 1 12.3431 -3.3968 -2.3888 46 1 7.8607 -0.0801 -2.0735 47 1 7.1512 -1.6396 -1.5922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051056851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = -68.301420 kcal Electronic energy + Delta-G solvation = -23231.202299 eV Core-core repulsion = 20026.406412 eV Total energy + Delta-G solvation = -3204.795887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06978 -37.95344 -36.59170 -33.84701 -33.46104 -31.92723 -30.98375 -30.02760 -26.94584 -26.70224 -24.03921 -23.66702 -21.99428 -21.51448 -20.95270 -20.19202 -19.08398 -16.91304 -16.42406 -16.26626 -15.23840 -15.00725 -14.71969 -14.33670 -14.15144 -14.02102 -13.93944 -13.37497 -13.23385 -13.04579 -12.82246 -12.53791 -12.36881 -12.28214 -12.16633 -11.69134 -11.65131 -11.20033 -11.04173 -10.99193 -10.95595 -10.83660 -10.81421 -10.51787 -10.35823 -10.14814 -10.06863 -9.75700 -9.48984 -9.30125 -9.00125 -8.37016 -7.13346 -5.96856 -4.05542 2.89936 3.26008 3.33901 3.38106 3.41685 4.41256 4.46496 4.70812 4.71545 4.85567 5.03236 5.11245 5.11910 5.20355 5.26412 5.33221 5.35298 5.35989 5.50438 5.54906 5.60840 5.62953 5.67456 5.78581 5.84624 5.89070 5.97966 6.02453 6.05103 6.13291 6.19636 6.22289 6.36627 6.54364 6.56580 6.71253 6.84776 6.95575 7.34072 7.57297 7.61196 7.95226 8.10835 8.31591 8.36386 8.46730 9.04009 9.61073 11.08331 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.003890 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.197266 B = 7195.532388 C = 7405.881688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.125 4.125 4 C 0.139 3.861 5 H 0.086 0.914 6 C -0.163 4.163 7 N -0.730 5.730 8 C 0.520 3.480 9 O -0.532 6.532 10 C -0.105 4.105 11 H 0.098 0.902 12 C -0.105 4.105 13 C -0.115 4.115 14 C 0.059 3.941 15 N -0.543 5.543 16 C 0.189 3.811 17 C -0.548 4.548 18 H 0.056 0.944 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.087 3.913 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.029 0.971 44 H 0.034 0.966 45 H 0.262 0.738 46 H 0.070 0.930 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.587 8.760 1.244 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.163 4.163 4 C 0.034 3.966 5 H 0.104 0.896 6 C -0.222 4.222 7 N -0.384 5.384 8 C 0.306 3.694 9 O -0.408 6.408 10 C -0.127 4.127 11 H 0.116 0.884 12 C -0.143 4.143 13 C -0.153 4.153 14 C -0.069 4.069 15 N -0.267 5.267 16 C 0.063 3.937 17 C -0.587 4.587 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.531 5.531 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.042 4.042 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.870 9.080 1.609 22.817 hybrid contribution -0.043 -1.364 1.032 1.711 sum -20.913 7.716 2.641 22.447 Atomic orbital electron populations 1.21774 0.95877 1.01661 1.01613 1.21544 0.95635 0.96556 1.02675 1.21918 0.94065 0.97497 1.02848 1.20938 0.93159 0.94406 0.88047 0.89566 1.22179 1.02416 0.95980 1.01610 1.46140 1.18251 1.60780 1.13184 1.20887 0.80744 0.76958 0.90789 1.90713 1.55858 1.57307 1.36877 1.21434 0.98197 0.98703 0.94318 0.88402 1.21507 0.96889 0.97165 0.98725 1.21627 0.96999 0.99918 0.96768 1.21891 0.91426 0.93394 1.00212 1.62423 1.05017 1.29578 1.29648 1.19724 0.82534 0.95065 0.96331 1.21721 0.92570 1.20311 1.24147 0.92576 1.24946 0.95784 0.96776 0.96212 1.69930 0.97765 1.42393 1.42978 0.86721 0.76972 0.82486 0.82274 1.20293 1.21187 1.20195 1.21563 0.91447 0.98896 0.92295 0.92862 0.92816 0.92761 0.91663 0.91889 0.90617 0.91486 0.92619 0.91956 0.91852 0.76907 0.91960 0.92433 0.91588 0.92155 0.91594 0.94363 0.95287 0.94770 0.92800 0.91196 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.98 5.82 -26.73 -0.16 -1.14 16 3 C -0.13 -0.91 4.75 -26.73 -0.13 -1.04 16 4 C 0.14 1.41 2.57 -67.93 -0.17 1.24 16 5 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 6 C -0.16 -1.60 9.48 37.16 0.35 -1.24 16 7 N -0.73 -8.03 4.43 -53.81 -0.24 -8.27 16 8 C 0.52 8.03 7.12 -10.99 -0.08 7.95 16 9 O -0.53 -10.63 15.65 5.55 0.09 -10.54 16 10 C -0.10 -1.62 2.69 -91.69 -0.25 -1.87 16 11 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 12 C -0.10 -1.41 5.16 -26.61 -0.14 -1.54 16 13 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 14 C 0.06 1.14 5.04 -3.84 -0.02 1.12 16 15 N -0.54 -11.81 4.86 -236.12 -1.15 -12.96 16 16 C 0.19 4.99 5.12 -4.98 -0.03 4.97 16 17 C -0.55 -15.55 7.73 -34.44 -0.27 -15.82 16 18 H 0.06 1.59 5.85 -52.49 -0.31 1.28 16 19 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 20 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 21 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.09 1.81 3.69 -3.83 -0.01 1.80 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 3.33 8.08 -40.82 -0.33 3.00 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.58 7.66 -51.92 -0.40 0.18 16 39 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 42 H 0.04 0.81 6.57 -51.93 -0.34 0.47 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 1.57 8.06 -51.93 -0.42 1.16 16 47 H 0.05 1.08 6.97 -51.93 -0.36 0.72 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.03 366.76 -9.69 -41.72 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.85 Total: -0.25 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.78 Total: -6.23 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.65 Total: -47.38 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.03 -9.69 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.583 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds