Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 C 1.53000 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47251 * 304.99608 * 4 3 2 6 6 C 1.53004 * 109.47192 * 184.99902 * 4 3 2 7 7 N 1.46498 * 109.47460 * 65.00007 * 4 3 2 8 8 C 1.34769 * 120.00363 * 204.99841 * 7 4 3 9 9 O 1.21284 * 120.00034 * 359.97438 * 8 7 4 10 10 C 1.50702 * 120.00242 * 179.97438 * 8 7 4 11 11 H 1.09002 * 109.50478 * 59.92742 * 10 8 7 12 12 C 1.53113 * 109.50402 * 299.80231 * 10 8 7 13 13 C 1.53124 * 109.16299 * 182.40527 * 12 10 8 14 14 C 1.53035 * 109.27742 * 57.65506 * 13 12 10 15 15 N 1.46843 * 109.52508 * 300.82383 * 14 13 12 16 16 C 1.46894 * 111.00234 * 185.84022 * 15 14 13 17 17 C 1.50700 * 109.47141 * 300.34389 * 16 15 14 18 18 H 1.08000 * 119.99934 * 4.83342 * 17 16 15 19 19 C 1.37877 * 120.00214 * 184.82895 * 17 16 15 20 20 N 1.31514 * 120.00054 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00030 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47012 * 60.00228 * 21 19 17 23 23 H 1.48496 * 109.46852 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47042 * 300.00040 * 21 19 17 25 25 C 1.46842 * 111.19978 * 61.73967 * 15 14 13 26 26 H 1.09002 * 109.46916 * 300.00352 * 1 2 3 27 27 H 1.08999 * 109.46854 * 59.99824 * 1 2 3 28 28 H 1.08996 * 109.47138 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46674 * 240.00121 * 2 1 3 30 30 H 1.08999 * 109.47380 * 120.00157 * 2 1 3 31 31 H 1.08994 * 109.47170 * 59.99942 * 3 2 1 32 32 H 1.09000 * 109.46883 * 299.99593 * 3 2 1 33 33 H 1.09003 * 109.46778 * 300.00000 * 6 4 3 34 34 H 1.08999 * 109.46858 * 59.99915 * 6 4 3 35 35 H 1.08997 * 109.47550 * 179.97438 * 6 4 3 36 36 H 0.97005 * 119.99983 * 25.00164 * 7 4 3 37 37 H 1.09004 * 109.52850 * 302.30834 * 12 10 8 38 38 H 1.09008 * 109.52345 * 62.50228 * 12 10 8 39 39 H 1.09008 * 109.49856 * 297.71475 * 13 12 10 40 40 H 1.08999 * 109.50351 * 177.60098 * 13 12 10 41 41 H 1.09000 * 109.46114 * 180.80353 * 14 13 12 42 42 H 1.08997 * 109.45253 * 60.83565 * 14 13 12 43 43 H 1.09004 * 109.47270 * 60.33856 * 16 15 14 44 44 H 1.09000 * 109.47230 * 180.34261 * 16 15 14 45 45 H 0.96996 * 120.00290 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.46546 * 178.24180 * 25 15 14 47 47 H 1.09000 * 109.46283 * 58.27815 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0802 2.8794 0.1251 7 7 4.0579 0.8589 -1.2527 8 6 5.2797 0.2923 -1.3011 9 8 5.9757 0.2660 -0.3082 10 6 5.7813 -0.3085 -2.5889 11 1 5.8165 0.4611 -3.3601 12 6 4.8395 -1.4324 -3.0296 13 6 5.3885 -2.0768 -4.3056 14 6 6.8029 -2.5974 -4.0404 15 7 7.6652 -1.4847 -3.6226 16 6 9.0618 -1.9209 -3.4930 17 6 9.1512 -3.0217 -2.4677 18 1 8.2513 -3.4170 -2.0200 19 6 10.3817 -3.5244 -2.1013 20 7 11.4774 -3.0435 -2.6469 21 14 10.4924 -4.8885 -0.8299 22 1 9.7487 -6.0787 -1.3149 23 1 11.9166 -5.2486 -0.6131 24 1 9.9000 -4.4220 0.4495 25 6 7.1845 -0.8804 -2.3736 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7165 3.4689 -0.7166 34 1 3.7172 3.3136 1.0566 35 1 5.1702 2.8794 0.1251 36 1 3.5014 0.8803 -2.0470 37 1 4.7740 -2.1828 -2.2418 38 1 3.8491 -1.0217 -3.2261 39 1 5.4173 -1.3355 -5.1043 40 1 4.7449 -2.9056 -4.6006 41 1 7.2021 -3.0442 -4.9510 42 1 6.7713 -3.3485 -3.2512 43 1 9.4179 -2.2903 -4.4547 44 1 9.6776 -1.0789 -3.1766 45 1 12.3431 -3.3968 -2.3888 46 1 7.8607 -0.0801 -2.0735 47 1 7.1512 -1.6396 -1.5922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051056851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = -90.227425 kcal Electronic energy + Delta-G solvation = -23232.153082 eV Core-core repulsion = 20026.406412 eV Total energy + Delta-G solvation = -3205.746670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32503 -39.38778 -37.61531 -35.57327 -34.45168 -33.72809 -32.22063 -31.20938 -28.74507 -27.57070 -25.78511 -25.13222 -23.15390 -22.74286 -21.81992 -21.45303 -20.58459 -18.51024 -18.10171 -17.40400 -16.83821 -16.34017 -15.80446 -15.79703 -15.38779 -15.33032 -14.96893 -14.89900 -14.57218 -14.33496 -14.04202 -13.67394 -13.54919 -13.39985 -13.15084 -13.01811 -12.91557 -12.88905 -12.43130 -12.37728 -12.27916 -12.19601 -11.86685 -11.84058 -11.73101 -11.60642 -11.55119 -11.48833 -11.12569 -10.67600 -10.60603 -10.04236 -9.07506 -8.19210 -6.38804 1.31021 1.34286 1.41835 1.66841 2.19928 2.33570 3.05081 3.36372 3.67561 3.75590 3.87867 4.04375 4.06518 4.12460 4.31716 4.33266 4.41219 4.50179 4.51438 4.64708 4.67393 4.78202 4.84277 4.88088 4.90914 4.93177 5.00384 5.03650 5.08892 5.10506 5.17561 5.20495 5.27973 5.29589 5.31520 5.32381 5.34958 5.47891 5.50886 5.63251 5.70450 6.01980 6.20484 6.51982 6.61648 6.81325 7.32092 7.33320 8.83181 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.003890 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.197266 B = 7195.532388 C = 7405.881688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.136 3.864 5 H 0.056 0.944 6 C -0.160 4.160 7 N -0.705 5.705 8 C 0.520 3.480 9 O -0.588 6.588 10 C -0.095 4.095 11 H 0.122 0.878 12 C -0.099 4.099 13 C -0.104 4.104 14 C 0.055 3.945 15 N -0.536 5.536 16 C 0.200 3.800 17 C -0.559 4.559 18 H 0.051 0.949 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.955 3.045 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.278 1.278 25 C 0.094 3.906 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.416 0.584 37 H 0.046 0.954 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.012 0.988 43 H 0.011 0.989 44 H 0.001 0.999 45 H 0.266 0.734 46 H 0.039 0.961 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.233 9.118 0.540 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.151 4.151 4 C 0.032 3.968 5 H 0.074 0.926 6 C -0.218 4.218 7 N -0.358 5.358 8 C 0.307 3.693 9 O -0.468 6.468 10 C -0.116 4.116 11 H 0.140 0.860 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.074 4.074 15 N -0.259 5.259 16 C 0.073 3.927 17 C -0.598 4.598 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.779 3.221 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.204 1.204 25 C -0.035 4.035 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.253 0.747 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.019 0.981 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -24.587 9.452 0.870 26.355 hybrid contribution 1.087 -1.431 1.248 2.187 sum -23.500 8.021 2.118 24.921 Atomic orbital electron populations 1.21744 0.94638 1.01813 1.02411 1.21549 0.96688 0.96633 1.01720 1.21860 0.91107 0.97579 1.04592 1.21053 0.95347 0.93996 0.86415 0.92568 1.22142 1.00206 0.95990 1.03448 1.45923 1.16641 1.58848 1.14436 1.20850 0.81653 0.76926 0.89858 1.90703 1.57758 1.59742 1.38615 1.21317 0.95052 1.00049 0.95197 0.86011 1.21545 0.98569 0.95886 0.97686 1.21589 0.93418 1.01448 0.97663 1.22042 0.94310 0.92168 0.98834 1.62384 1.03248 1.30466 1.29793 1.19393 0.85249 0.93299 0.94730 1.21951 0.92615 1.20757 1.24517 0.93053 1.25814 0.95415 0.99289 0.98288 1.70045 0.98307 1.43757 1.44347 0.85661 0.77511 0.79648 0.79235 1.18900 1.20059 1.20373 1.21412 0.94587 0.96870 0.90611 0.92435 0.91636 0.93011 0.91954 0.93657 0.89330 0.89217 0.90647 0.90271 0.95230 0.74674 0.93533 0.87258 0.89698 0.89079 0.92074 0.97000 0.97105 0.98104 0.92487 0.94259 0.97528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.13 -1.67 5.82 30.59 0.18 -1.49 16 3 C -0.11 -1.28 4.75 30.59 0.15 -1.14 16 4 C 0.14 2.55 2.57 44.99 0.12 2.67 16 5 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 6 C -0.16 -2.88 9.48 71.98 0.68 -2.19 16 7 N -0.71 -13.99 4.43 -442.54 -1.96 -15.95 16 8 C 0.52 15.92 7.12 87.66 0.62 16.54 16 9 O -0.59 -24.67 15.65 -3.04 -0.05 -24.72 16 10 C -0.09 -2.83 2.69 -11.49 -0.03 -2.87 16 11 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 12 C -0.10 -2.35 5.16 30.67 0.16 -2.19 16 13 C -0.10 -2.63 6.09 30.65 0.19 -2.44 16 14 C 0.05 2.11 5.04 86.33 0.43 2.54 16 15 N -0.54 -24.13 4.86 -900.96 -4.38 -28.50 16 16 C 0.20 11.21 5.12 85.56 0.44 11.65 16 17 C -0.56 -33.20 7.73 25.60 0.20 -33.00 16 18 H 0.05 3.04 5.85 -2.91 -0.02 3.02 16 19 C 0.01 0.68 5.46 84.65 0.46 1.14 16 20 N -0.92 -57.58 13.29 21.45 0.28 -57.30 16 21 Si 0.95 46.57 29.54 68.60 2.03 48.60 16 22 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.09 4.12 3.69 86.33 0.32 4.44 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.84 7.75 -2.38 -0.02 0.82 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.42 5.17 8.08 -92.70 -0.75 4.42 16 37 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.11 1.56 7.66 -2.38 -0.02 1.55 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 42 H 0.01 0.51 6.57 -2.39 -0.02 0.50 16 43 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.00 0.05 8.09 -2.39 -0.02 0.03 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.04 1.90 8.06 -2.39 -0.02 1.88 16 47 H 0.01 0.33 6.97 -2.39 -0.02 0.31 16 Total: -1.00 -75.89 366.76 0.72 -75.17 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.17 Total: 9.82 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 4.63 Total: -7.12 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -6.05 Total: -101.75 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.89 0.72 -75.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.057 kcal (2) G-P(sol) polarization free energy of solvation -75.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds