Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47352 * 2 1 4 4 C 1.53004 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47232 * 54.99857 * 4 3 2 6 6 C 1.53002 * 109.47107 * 174.99673 * 4 3 2 7 7 N 1.46502 * 109.46925 * 294.99665 * 4 3 2 8 8 C 1.34774 * 119.99900 * 154.99986 * 7 4 3 9 9 O 1.21274 * 120.00045 * 0.02562 * 8 7 4 10 10 C 1.50701 * 119.99808 * 179.97438 * 8 7 4 11 11 H 1.09003 * 109.50503 * 300.07781 * 10 8 7 12 12 C 1.53117 * 109.50292 * 60.20027 * 10 8 7 13 13 C 1.53118 * 109.16219 * 177.59766 * 12 10 8 14 14 C 1.53048 * 109.27398 * 302.34342 * 13 12 10 15 15 N 1.46839 * 109.52538 * 59.17897 * 14 13 12 16 16 C 1.46897 * 111.00074 * 174.15929 * 15 14 13 17 17 C 1.50702 * 109.46913 * 59.32345 * 16 15 14 18 18 H 1.07997 * 119.99722 * 5.00097 * 17 16 15 19 19 C 1.37876 * 119.99818 * 185.00861 * 17 16 15 20 20 N 1.31516 * 120.00115 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47079 * 89.99363 * 21 19 17 23 23 H 1.48496 * 109.47096 * 209.99467 * 21 19 17 24 24 H 1.48494 * 109.46935 * 329.99789 * 21 19 17 25 25 C 1.46848 * 111.19981 * 298.25969 * 15 14 13 26 26 H 1.09007 * 109.46573 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47259 * 60.00076 * 1 2 3 29 29 H 1.08997 * 109.46918 * 120.00301 * 2 1 3 30 30 H 1.08997 * 109.46988 * 239.99397 * 2 1 3 31 31 H 1.09010 * 109.47058 * 299.99860 * 3 2 1 32 32 H 1.08997 * 109.47567 * 59.99751 * 3 2 1 33 33 H 1.08993 * 109.46957 * 179.97438 * 6 4 3 34 34 H 1.08993 * 109.47432 * 299.99951 * 6 4 3 35 35 H 1.09001 * 109.46924 * 59.99995 * 6 4 3 36 36 H 0.96999 * 119.99631 * 335.00247 * 7 4 3 37 37 H 1.09006 * 109.52101 * 297.49886 * 12 10 8 38 38 H 1.08999 * 109.52692 * 57.68886 * 12 10 8 39 39 H 1.08996 * 109.50456 * 182.40264 * 13 12 10 40 40 H 1.08999 * 109.54150 * 62.30044 * 13 12 10 41 41 H 1.09003 * 109.45634 * 299.16178 * 14 13 12 42 42 H 1.09000 * 109.45674 * 179.19813 * 14 13 12 43 43 H 1.09001 * 109.46672 * 179.31824 * 16 15 14 44 44 H 1.08995 * 109.47157 * 299.32145 * 16 15 14 45 45 H 0.97003 * 119.99990 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46293 * 301.72672 * 25 15 14 47 47 H 1.08998 * 109.45952 * 181.75027 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8530 -0.8427 6 6 4.0801 2.8794 -0.1265 7 7 4.0589 0.8585 1.2509 8 6 5.2808 0.2919 1.2982 9 8 5.9759 0.2659 0.3047 10 6 5.7839 -0.3081 2.5858 11 1 5.8199 0.4618 3.3565 12 6 4.8425 -1.4318 3.0281 13 6 5.3928 -2.0755 4.3038 14 6 6.8070 -2.5963 4.0373 15 7 7.6688 -1.4838 3.6179 16 6 9.0654 -1.9202 3.4869 17 6 9.1522 -3.0272 2.4681 18 1 8.2745 -3.3171 1.9096 19 6 10.3522 -3.6699 2.2492 20 7 11.4211 -3.3166 2.9291 21 14 10.4598 -5.0427 0.9868 22 1 10.8088 -4.4703 -0.3383 23 1 11.5063 -6.0126 1.3983 24 1 9.1498 -5.7362 0.8969 25 6 7.1867 -0.8802 2.3691 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 5.1700 2.8794 -0.1265 34 1 3.7164 3.3138 -1.0576 35 1 3.7171 3.4688 0.7156 36 1 3.5030 0.8797 2.0456 37 1 3.8523 -1.0209 3.2254 38 1 4.7761 -2.1826 2.2408 39 1 4.7496 -2.9041 4.6000 40 1 5.4225 -1.3344 5.1026 41 1 6.7745 -3.3479 3.2485 42 1 7.2072 -3.0425 4.9478 43 1 9.6797 -1.0798 3.1636 44 1 9.4243 -2.2835 4.4498 45 1 12.2654 -3.7686 2.7748 46 1 7.1525 -1.6398 1.5881 47 1 7.8627 -0.0799 2.0680 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051056852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = -68.557801 kcal Electronic energy + Delta-G solvation = -23217.079799 eV Core-core repulsion = 20012.272794 eV Total energy + Delta-G solvation = -3204.807004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07921 -37.95426 -36.59833 -33.85201 -33.46559 -31.92874 -30.99138 -30.02849 -26.95088 -26.70473 -24.03243 -23.67868 -21.99830 -21.51632 -20.95697 -20.19561 -19.08687 -16.91954 -16.43612 -16.27048 -15.24135 -15.01206 -14.71792 -14.34589 -14.15093 -14.02609 -13.93316 -13.38191 -13.23665 -13.04772 -12.82545 -12.54859 -12.37163 -12.29140 -12.17100 -11.69621 -11.65360 -11.20939 -11.06533 -10.99296 -10.95572 -10.84223 -10.80875 -10.50632 -10.34683 -10.16659 -10.05414 -9.75438 -9.50772 -9.29986 -9.01015 -8.37773 -7.13501 -5.97416 -4.05945 2.88889 3.25218 3.32397 3.38572 3.41777 4.40737 4.46025 4.70331 4.71115 4.85136 5.02894 5.10777 5.11501 5.19994 5.25967 5.32635 5.35390 5.35458 5.49953 5.54502 5.60626 5.62481 5.67372 5.78257 5.84227 5.89285 5.97484 6.01937 6.04496 6.12639 6.20615 6.22655 6.37155 6.54127 6.55671 6.72047 6.86290 6.93219 7.33733 7.57403 7.60348 7.94986 8.10634 8.32841 8.34699 8.45914 9.03960 9.60632 11.07700 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.003829 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.269508 B = 7310.097036 C = 7468.725408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.125 4.125 4 C 0.139 3.861 5 H 0.086 0.914 6 C -0.163 4.163 7 N -0.730 5.730 8 C 0.520 3.480 9 O -0.533 6.533 10 C -0.105 4.105 11 H 0.098 0.902 12 C -0.105 4.105 13 C -0.115 4.115 14 C 0.061 3.939 15 N -0.543 5.543 16 C 0.188 3.812 17 C -0.547 4.547 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.086 3.914 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.045 0.955 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.514 9.209 -1.691 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.163 4.163 4 C 0.034 3.966 5 H 0.104 0.896 6 C -0.222 4.222 7 N -0.383 5.383 8 C 0.306 3.694 9 O -0.408 6.408 10 C -0.126 4.126 11 H 0.116 0.884 12 C -0.143 4.143 13 C -0.153 4.153 14 C -0.068 4.068 15 N -0.267 5.267 16 C 0.063 3.937 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.043 4.043 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.809 9.503 -2.029 22.966 hybrid contribution -0.033 -1.370 -1.022 1.710 sum -20.842 8.133 -3.052 22.580 Atomic orbital electron populations 1.21773 0.95872 1.01667 1.01614 1.21542 0.95643 0.96550 1.02676 1.21920 0.94057 0.97501 1.02854 1.20943 0.93156 0.94400 0.88053 0.89564 1.22176 1.02407 0.95980 1.01620 1.46142 1.18260 1.60749 1.13196 1.20887 0.80744 0.76939 0.90784 1.90707 1.55934 1.57342 1.36840 1.21432 0.98161 0.98727 0.94319 0.88383 1.21506 0.96880 0.97151 0.98747 1.21630 0.97050 0.99926 0.96732 1.21874 0.91292 0.93315 1.00294 1.62427 1.05030 1.29723 1.29485 1.19732 0.82466 0.94674 0.96828 1.21756 0.95511 1.18970 1.22368 0.92536 1.24949 0.95767 0.97081 0.95969 1.69945 1.00285 1.41909 1.40940 0.86655 0.77730 0.82065 0.81962 1.20583 1.21159 1.20002 1.21582 0.91536 0.98848 0.92370 0.92813 0.92757 0.92862 0.91662 0.91890 0.90620 0.91476 0.91860 0.91945 0.92620 0.76895 0.92435 0.91959 0.92149 0.91601 0.94289 0.91564 0.95417 0.94623 0.92865 0.93723 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.98 5.82 -26.73 -0.16 -1.13 16 3 C -0.13 -0.91 4.75 -26.73 -0.13 -1.03 16 4 C 0.14 1.40 2.57 -67.93 -0.17 1.22 16 5 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 6 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 7 N -0.73 -7.97 4.44 -53.80 -0.24 -8.21 16 8 C 0.52 7.97 7.12 -10.99 -0.08 7.89 16 9 O -0.53 -10.54 15.65 5.56 0.09 -10.46 16 10 C -0.10 -1.61 2.69 -91.69 -0.25 -1.86 16 11 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 12 C -0.10 -1.41 5.16 -26.61 -0.14 -1.54 16 13 C -0.12 -1.66 6.09 -26.65 -0.16 -1.83 16 14 C 0.06 1.18 5.03 -3.83 -0.02 1.16 16 15 N -0.54 -11.81 4.86 -236.11 -1.15 -12.95 16 16 C 0.19 4.98 5.12 -4.98 -0.03 4.95 16 17 C -0.55 -15.50 7.72 -34.44 -0.27 -15.77 16 18 H 0.06 1.61 5.86 -52.49 -0.31 1.30 16 19 C 0.06 1.87 5.46 -17.82 -0.10 1.77 16 20 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 21 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.09 1.77 3.69 -3.83 -0.01 1.76 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 3.31 8.08 -40.82 -0.33 2.98 16 37 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.84 6.73 -51.93 -0.35 0.49 16 42 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.04 1.05 6.80 -51.93 -0.35 0.70 16 47 H 0.07 1.55 8.05 -51.93 -0.42 1.13 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -31.96 366.72 -9.69 -41.64 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.85 Total: -0.34 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.78 Total: -6.25 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.65 Total: -47.24 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.96 -9.69 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.913 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds