Wall clock time and date at job start Tue Mar 31 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47352 * 2 1 4 4 C 1.53004 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47232 * 54.99857 * 4 3 2 6 6 C 1.53002 * 109.47107 * 174.99673 * 4 3 2 7 7 N 1.46502 * 109.46925 * 294.99665 * 4 3 2 8 8 C 1.34774 * 119.99900 * 154.99986 * 7 4 3 9 9 O 1.21274 * 120.00045 * 0.02562 * 8 7 4 10 10 C 1.50701 * 119.99808 * 179.97438 * 8 7 4 11 11 H 1.09003 * 109.50503 * 300.07781 * 10 8 7 12 12 C 1.53117 * 109.50292 * 60.20027 * 10 8 7 13 13 C 1.53118 * 109.16219 * 177.59766 * 12 10 8 14 14 C 1.53048 * 109.27398 * 302.34342 * 13 12 10 15 15 N 1.46839 * 109.52538 * 59.17897 * 14 13 12 16 16 C 1.46897 * 111.00074 * 174.15929 * 15 14 13 17 17 C 1.50702 * 109.46913 * 59.32345 * 16 15 14 18 18 H 1.07997 * 119.99722 * 5.00097 * 17 16 15 19 19 C 1.37876 * 119.99818 * 185.00861 * 17 16 15 20 20 N 1.31516 * 120.00115 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47079 * 89.99363 * 21 19 17 23 23 H 1.48496 * 109.47096 * 209.99467 * 21 19 17 24 24 H 1.48494 * 109.46935 * 329.99789 * 21 19 17 25 25 C 1.46848 * 111.19981 * 298.25969 * 15 14 13 26 26 H 1.09007 * 109.46573 * 300.00212 * 1 2 3 27 27 H 1.08996 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47259 * 60.00076 * 1 2 3 29 29 H 1.08997 * 109.46918 * 120.00301 * 2 1 3 30 30 H 1.08997 * 109.46988 * 239.99397 * 2 1 3 31 31 H 1.09010 * 109.47058 * 299.99860 * 3 2 1 32 32 H 1.08997 * 109.47567 * 59.99751 * 3 2 1 33 33 H 1.08993 * 109.46957 * 179.97438 * 6 4 3 34 34 H 1.08993 * 109.47432 * 299.99951 * 6 4 3 35 35 H 1.09001 * 109.46924 * 59.99995 * 6 4 3 36 36 H 0.96999 * 119.99631 * 335.00247 * 7 4 3 37 37 H 1.09006 * 109.52101 * 297.49886 * 12 10 8 38 38 H 1.08999 * 109.52692 * 57.68886 * 12 10 8 39 39 H 1.08996 * 109.50456 * 182.40264 * 13 12 10 40 40 H 1.08999 * 109.54150 * 62.30044 * 13 12 10 41 41 H 1.09003 * 109.45634 * 299.16178 * 14 13 12 42 42 H 1.09000 * 109.45674 * 179.19813 * 14 13 12 43 43 H 1.09001 * 109.46672 * 179.31824 * 16 15 14 44 44 H 1.08995 * 109.47157 * 299.32145 * 16 15 14 45 45 H 0.97003 * 119.99990 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46293 * 301.72672 * 25 15 14 47 47 H 1.08998 * 109.45952 * 181.75027 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8530 -0.8427 6 6 4.0801 2.8794 -0.1265 7 7 4.0589 0.8585 1.2509 8 6 5.2808 0.2919 1.2982 9 8 5.9759 0.2659 0.3047 10 6 5.7839 -0.3081 2.5858 11 1 5.8199 0.4618 3.3565 12 6 4.8425 -1.4318 3.0281 13 6 5.3928 -2.0755 4.3038 14 6 6.8070 -2.5963 4.0373 15 7 7.6688 -1.4838 3.6179 16 6 9.0654 -1.9202 3.4869 17 6 9.1522 -3.0272 2.4681 18 1 8.2745 -3.3171 1.9096 19 6 10.3522 -3.6699 2.2492 20 7 11.4211 -3.3166 2.9291 21 14 10.4598 -5.0427 0.9868 22 1 10.8088 -4.4703 -0.3383 23 1 11.5063 -6.0126 1.3983 24 1 9.1498 -5.7362 0.8969 25 6 7.1867 -0.8802 2.3691 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 5.1700 2.8794 -0.1265 34 1 3.7164 3.3138 -1.0576 35 1 3.7171 3.4688 0.7156 36 1 3.5030 0.8797 2.0456 37 1 3.8523 -1.0209 3.2254 38 1 4.7761 -2.1826 2.2408 39 1 4.7496 -2.9041 4.6000 40 1 5.4225 -1.3344 5.1026 41 1 6.7745 -3.3479 3.2485 42 1 7.2072 -3.0425 4.9478 43 1 9.6797 -1.0798 3.1636 44 1 9.4243 -2.2835 4.4498 45 1 12.2654 -3.7686 2.7748 46 1 7.1525 -1.6398 1.5881 47 1 7.8627 -0.0799 2.0680 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051056852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:13 Heat of formation + Delta-G solvation = -90.369749 kcal Electronic energy + Delta-G solvation = -23218.025636 eV Core-core repulsion = 20012.272794 eV Total energy + Delta-G solvation = -3205.752841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32600 -39.38659 -37.61444 -35.57527 -34.45180 -33.72768 -32.22446 -31.20578 -28.74670 -27.57000 -25.78446 -25.13267 -23.15855 -22.74152 -21.81665 -21.44922 -20.58798 -18.51418 -18.10574 -17.40627 -16.83363 -16.32833 -15.81675 -15.79258 -15.38539 -15.33075 -14.97157 -14.89942 -14.55411 -14.34917 -14.05289 -13.67511 -13.55027 -13.39608 -13.15561 -13.03350 -12.90924 -12.88837 -12.43087 -12.38380 -12.27680 -12.16820 -11.86906 -11.84442 -11.72424 -11.60679 -11.55490 -11.48815 -11.13130 -10.67527 -10.61058 -10.04141 -9.07721 -8.19448 -6.38995 1.31124 1.33102 1.43044 1.66811 2.19972 2.33443 3.04679 3.36450 3.67534 3.75585 3.87682 4.04181 4.06575 4.12458 4.31806 4.33275 4.41298 4.50159 4.51429 4.64782 4.67223 4.78320 4.84379 4.87836 4.91453 4.93415 4.99958 5.03720 5.08791 5.10579 5.16712 5.21040 5.28130 5.29718 5.30825 5.32397 5.34959 5.48238 5.50894 5.63267 5.70296 6.01887 6.21088 6.51340 6.61612 6.81388 7.31904 7.33130 8.83006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.003829 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.269508 B = 7310.097036 C = 7468.725408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.136 3.864 5 H 0.056 0.944 6 C -0.160 4.160 7 N -0.706 5.706 8 C 0.521 3.479 9 O -0.588 6.588 10 C -0.095 4.095 11 H 0.122 0.878 12 C -0.099 4.099 13 C -0.104 4.104 14 C 0.057 3.943 15 N -0.535 5.535 16 C 0.200 3.800 17 C -0.558 4.558 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.278 1.278 23 H -0.273 1.273 24 H -0.268 1.268 25 C 0.093 3.907 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.416 0.584 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.011 0.989 42 H 0.059 0.941 43 H -0.003 1.003 44 H 0.015 0.985 45 H 0.266 0.734 46 H 0.006 0.994 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.098 9.656 -1.070 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.151 4.151 4 C 0.032 3.968 5 H 0.075 0.925 6 C -0.218 4.218 7 N -0.359 5.359 8 C 0.308 3.692 9 O -0.468 6.468 10 C -0.116 4.116 11 H 0.140 0.860 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.072 4.072 15 N -0.259 5.259 16 C 0.073 3.927 17 C -0.597 4.597 18 H 0.068 0.932 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.198 1.198 24 H -0.193 1.193 25 C -0.037 4.037 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.015 0.985 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.462 9.967 -1.378 26.450 hybrid contribution 1.082 -1.466 -1.214 2.189 sum -23.380 8.501 -2.591 25.012 Atomic orbital electron populations 1.21744 0.94652 1.01807 1.02410 1.21547 0.96680 0.96644 1.01721 1.21862 0.91134 0.97563 1.04588 1.21057 0.95317 0.94004 0.86427 0.92535 1.22140 1.00226 0.95972 1.03444 1.45928 1.16662 1.58834 1.14444 1.20837 0.81653 0.76915 0.89842 1.90697 1.57805 1.59739 1.38541 1.21315 0.95037 1.00036 0.95226 0.85993 1.21541 0.98585 0.95903 0.97649 1.21590 0.93420 1.01439 0.97690 1.22014 0.94236 0.92126 0.98789 1.62387 1.03243 1.30513 1.29742 1.19398 0.85210 0.93012 0.95074 1.21953 0.95499 1.19533 1.22706 0.93241 1.25804 0.95360 0.99614 0.97973 1.70054 1.00850 1.43169 1.42333 0.85601 0.78187 0.79090 0.79126 1.20356 1.19797 1.19286 1.21442 0.94680 0.96899 0.90631 0.91644 0.93023 0.92428 0.91967 0.93644 0.89333 0.89227 0.95192 0.90266 0.90673 0.74684 0.87259 0.93547 0.89148 0.89696 0.97042 0.92251 0.98481 0.96723 0.92469 0.97521 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.66 5.82 30.59 0.18 -1.48 16 3 C -0.11 -1.27 4.75 30.59 0.15 -1.12 16 4 C 0.14 2.53 2.57 44.99 0.12 2.64 16 5 H 0.06 1.42 7.58 -2.39 -0.02 1.40 16 6 C -0.16 -2.84 9.48 71.98 0.68 -2.15 16 7 N -0.71 -13.86 4.44 -442.53 -1.96 -15.82 16 8 C 0.52 15.77 7.12 87.66 0.62 16.40 16 9 O -0.59 -24.37 15.65 -3.01 -0.05 -24.42 16 10 C -0.09 -2.82 2.69 -11.49 -0.03 -2.85 16 11 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 12 C -0.10 -2.36 5.16 30.67 0.16 -2.20 16 13 C -0.10 -2.66 6.09 30.65 0.19 -2.48 16 14 C 0.06 2.20 5.03 86.33 0.43 2.64 16 15 N -0.54 -24.14 4.86 -900.92 -4.38 -28.51 16 16 C 0.20 11.19 5.12 85.56 0.44 11.63 16 17 C -0.56 -33.12 7.72 25.60 0.20 -32.92 16 18 H 0.05 2.96 5.86 -2.91 -0.02 2.94 16 19 C 0.01 0.71 5.46 84.65 0.46 1.17 16 20 N -0.92 -57.26 13.29 21.45 0.28 -56.97 16 21 Si 0.96 46.47 29.54 68.60 2.03 48.49 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 25 C 0.09 4.01 3.69 86.33 0.32 4.33 16 26 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.83 7.75 -2.39 -0.02 0.81 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.42 5.12 8.08 -92.71 -0.75 4.37 16 37 H 0.11 1.57 7.66 -2.38 -0.02 1.55 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.01 0.50 6.73 -2.39 -0.02 0.48 16 42 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 43 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 44 H 0.01 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.01 0.33 6.80 -2.39 -0.02 0.31 16 47 H 0.04 1.97 8.05 -2.39 -0.02 1.95 16 Total: -1.00 -75.49 366.72 0.72 -74.77 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.17 Total: 9.61 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.62 Total: -7.16 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -6.05 Total: -101.30 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -75.49 0.72 -74.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.595 kcal (2) G-P(sol) polarization free energy of solvation -75.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds