Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 C 1.52999 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47200 * 305.00757 * 4 3 2 6 6 C 1.52996 * 109.47346 * 184.99971 * 4 3 2 7 7 N 1.46505 * 109.46541 * 65.00065 * 4 3 2 8 8 C 1.34773 * 119.99852 * 204.99886 * 7 4 3 9 9 O 1.21288 * 120.00082 * 359.97438 * 8 7 4 10 10 C 1.50702 * 120.00363 * 180.02562 * 8 7 4 11 11 H 1.09003 * 109.49818 * 300.07958 * 10 8 7 12 12 C 1.53118 * 109.50010 * 60.19427 * 10 8 7 13 13 C 1.53123 * 109.15762 * 177.59877 * 12 10 8 14 14 C 1.53039 * 109.28018 * 302.34692 * 13 12 10 15 15 N 1.46844 * 109.52018 * 59.17889 * 14 13 12 16 16 C 1.46902 * 110.99519 * 174.16484 * 15 14 13 17 17 C 1.50695 * 109.47578 * 59.31720 * 16 15 14 18 18 H 1.08007 * 120.00018 * 5.00519 * 17 16 15 19 19 C 1.37878 * 120.00361 * 185.00492 * 17 16 15 20 20 N 1.31517 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00097 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47319 * 60.00109 * 21 19 17 23 23 H 1.48506 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46884 * 299.99639 * 21 19 17 25 25 C 1.46852 * 111.19869 * 298.25559 * 15 14 13 26 26 H 1.09005 * 109.46708 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47042 * 60.00543 * 1 2 3 28 28 H 1.08997 * 109.47513 * 299.99613 * 1 2 3 29 29 H 1.08998 * 109.47042 * 119.99457 * 2 1 3 30 30 H 1.08998 * 109.47567 * 239.99601 * 2 1 3 31 31 H 1.09000 * 109.47244 * 300.00225 * 3 2 1 32 32 H 1.09002 * 109.47148 * 59.99909 * 3 2 1 33 33 H 1.09001 * 109.47183 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.46963 * 300.00457 * 6 4 3 35 35 H 1.08996 * 109.47253 * 60.00285 * 6 4 3 36 36 H 0.97001 * 120.00315 * 25.00401 * 7 4 3 37 37 H 1.08997 * 109.52707 * 297.50233 * 12 10 8 38 38 H 1.08999 * 109.52600 * 57.69921 * 12 10 8 39 39 H 1.09004 * 109.50496 * 182.40291 * 13 12 10 40 40 H 1.09000 * 109.53451 * 62.30910 * 13 12 10 41 41 H 1.09006 * 109.45901 * 299.16238 * 14 13 12 42 42 H 1.08995 * 109.46053 * 179.19911 * 14 13 12 43 43 H 1.09004 * 109.47260 * 179.31986 * 16 15 14 44 44 H 1.09004 * 109.46825 * 299.31358 * 16 15 14 45 45 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.46355 * 301.73164 * 25 15 14 47 47 H 1.09001 * 109.45025 * 181.75763 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0799 2.8796 0.1264 7 7 4.0587 0.8587 -1.2510 8 6 5.2807 0.2922 -1.2982 9 8 5.9759 0.2662 -0.3047 10 6 5.7838 -0.3080 -2.5858 11 1 5.1110 -1.1047 -2.9032 12 6 5.8408 0.7751 -3.6666 13 6 6.4092 0.1711 -4.9538 14 6 7.7939 -0.4148 -4.6685 15 7 7.6857 -1.4461 -3.6288 16 6 8.9716 -2.1270 -3.4270 17 6 10.0154 -1.1191 -3.0202 18 1 9.7338 -0.0916 -2.8428 19 6 11.3300 -1.5085 -2.8744 20 7 11.6729 -2.7598 -3.0900 21 14 12.6237 -0.2593 -2.3695 22 1 12.2699 0.3120 -1.0453 23 1 13.9480 -0.9256 -2.2827 24 1 12.6816 0.8287 -3.3786 25 6 7.1866 -0.8799 -2.3691 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 5.1699 2.8797 0.1264 34 1 3.7168 3.4689 -0.7157 35 1 3.7162 3.3140 1.0575 36 1 3.5029 0.8799 -2.0457 37 1 4.8367 1.1550 -3.8550 38 1 6.4828 1.5900 -3.3323 39 1 6.4922 0.9475 -5.7144 40 1 5.7466 -0.6177 -5.3098 41 1 8.4599 0.3774 -4.3264 42 1 8.1953 -0.8582 -5.5797 43 1 8.8663 -2.8775 -2.6435 44 1 9.2760 -2.6110 -4.3550 45 1 12.5976 -3.0339 -2.9871 46 1 7.8555 -0.0856 -2.0378 47 1 7.1470 -1.6614 -1.6103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051056854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -68.509698 kcal Electronic energy + Delta-G solvation = -23158.482794 eV Core-core repulsion = 19953.677876 eV Total energy + Delta-G solvation = -3204.804919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07644 -37.95631 -36.59547 -33.86162 -33.45302 -31.91995 -31.00204 -30.02858 -26.95486 -26.69987 -24.02487 -23.68038 -21.99806 -21.50363 -20.97177 -20.19171 -19.09547 -16.91185 -16.45130 -16.26014 -15.21200 -14.88059 -14.83276 -14.33709 -14.31533 -14.08865 -13.68656 -13.48511 -13.22125 -12.99422 -12.77354 -12.63031 -12.38013 -12.34118 -12.10355 -11.72193 -11.62918 -11.19192 -11.08051 -10.98614 -10.95298 -10.85088 -10.80989 -10.51558 -10.34056 -10.16547 -10.05145 -9.76694 -9.50815 -9.29213 -9.01549 -8.37419 -7.13577 -5.97228 -4.05811 2.88760 3.25363 3.33549 3.37717 3.41446 4.40683 4.46143 4.69713 4.71036 4.85397 5.03076 5.10149 5.13674 5.18355 5.26179 5.32750 5.35235 5.35654 5.49799 5.54720 5.60380 5.62609 5.67851 5.77811 5.84416 5.89145 5.96541 6.02817 6.03983 6.13195 6.20606 6.22673 6.37211 6.54157 6.55720 6.72092 6.86260 6.93301 7.33785 7.57229 7.60360 7.95046 8.10687 8.32860 8.34760 8.45954 9.03854 9.60678 11.07909 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.003730 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.397549 B = 7505.099423 C = 7882.745310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.126 4.126 4 C 0.139 3.861 5 H 0.087 0.913 6 C -0.164 4.164 7 N -0.730 5.730 8 C 0.520 3.480 9 O -0.533 6.533 10 C -0.104 4.104 11 H 0.098 0.902 12 C -0.105 4.105 13 C -0.115 4.115 14 C 0.061 3.939 15 N -0.543 5.543 16 C 0.189 3.811 17 C -0.548 4.548 18 H 0.056 0.944 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.086 3.914 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.045 0.955 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.634 8.911 1.778 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.163 4.163 4 C 0.035 3.965 5 H 0.105 0.895 6 C -0.222 4.222 7 N -0.383 5.383 8 C 0.306 3.694 9 O -0.408 6.408 10 C -0.126 4.126 11 H 0.116 0.884 12 C -0.143 4.143 13 C -0.153 4.153 14 C -0.068 4.068 15 N -0.267 5.267 16 C 0.063 3.937 17 C -0.587 4.587 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.043 4.043 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.291 8.395 2.354 23.007 hybrid contribution 1.171 1.314 0.240 1.776 sum -20.120 9.709 2.594 22.490 Atomic orbital electron populations 1.21775 0.95873 1.01673 1.01618 1.21543 0.95644 0.96540 1.02671 1.21921 0.94051 0.97516 1.02857 1.20939 0.93145 0.94393 0.88044 0.89539 1.22177 1.02406 0.96008 1.01607 1.46143 1.18242 1.60787 1.13173 1.20893 0.80696 0.77061 0.90718 1.90712 1.55897 1.57282 1.36934 1.21428 1.00558 0.98689 0.91950 0.88394 1.21505 1.00450 0.97086 0.95242 1.21632 0.98240 0.99566 0.95903 1.21873 0.94231 0.94604 0.96067 1.62434 1.30995 1.27099 1.06135 1.19727 0.82827 0.93628 0.97475 1.21721 0.93561 0.96217 1.47204 0.92592 1.24947 0.98533 0.95128 0.95129 1.69932 1.18191 1.15832 1.49130 0.86719 0.80843 0.81586 0.79281 1.20189 1.21199 1.20305 1.21581 0.91108 0.98880 0.92773 0.92743 0.92818 0.92861 0.91862 0.91663 0.91487 0.90619 0.91890 0.92635 0.91948 0.76894 0.92426 0.91971 0.92148 0.91595 0.94299 0.91559 0.95417 0.94637 0.92801 0.93724 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.96 5.82 -26.73 -0.16 -1.11 16 3 C -0.13 -0.90 4.75 -26.73 -0.13 -1.03 16 4 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16 5 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 6 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 7 N -0.73 -7.98 4.43 -53.81 -0.24 -8.22 16 8 C 0.52 7.97 7.12 -10.99 -0.08 7.90 16 9 O -0.53 -10.56 15.65 5.55 0.09 -10.47 16 10 C -0.10 -1.61 2.69 -91.69 -0.25 -1.86 16 11 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 12 C -0.10 -1.41 5.16 -26.61 -0.14 -1.55 16 13 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 14 C 0.06 1.18 5.03 -3.83 -0.02 1.16 16 15 N -0.54 -11.81 4.86 -236.11 -1.15 -12.96 16 16 C 0.19 4.99 5.12 -4.98 -0.03 4.97 16 17 C -0.55 -15.54 7.72 -34.44 -0.27 -15.81 16 18 H 0.06 1.59 5.86 -52.48 -0.31 1.28 16 19 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 20 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 21 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.09 1.77 3.69 -3.83 -0.01 1.76 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.53 7.75 -51.93 -0.40 0.12 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.40 3.31 8.08 -40.82 -0.33 2.98 16 37 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.83 6.73 -51.93 -0.35 0.48 16 42 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.04 1.05 6.80 -51.93 -0.35 0.70 16 47 H 0.07 1.55 8.05 -51.93 -0.42 1.13 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -31.97 366.73 -9.69 -41.65 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.85 Total: -0.32 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.78 Total: -6.26 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.65 Total: -47.27 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.97 -9.69 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.856 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds