Wall clock time and date at job start Tue Mar 31 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 C 1.52999 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47200 * 305.00757 * 4 3 2 6 6 C 1.52996 * 109.47346 * 184.99971 * 4 3 2 7 7 N 1.46505 * 109.46541 * 65.00065 * 4 3 2 8 8 C 1.34773 * 119.99852 * 204.99886 * 7 4 3 9 9 O 1.21288 * 120.00082 * 359.97438 * 8 7 4 10 10 C 1.50702 * 120.00363 * 180.02562 * 8 7 4 11 11 H 1.09003 * 109.49818 * 300.07958 * 10 8 7 12 12 C 1.53118 * 109.50010 * 60.19427 * 10 8 7 13 13 C 1.53123 * 109.15762 * 177.59877 * 12 10 8 14 14 C 1.53039 * 109.28018 * 302.34692 * 13 12 10 15 15 N 1.46844 * 109.52018 * 59.17889 * 14 13 12 16 16 C 1.46902 * 110.99519 * 174.16484 * 15 14 13 17 17 C 1.50695 * 109.47578 * 59.31720 * 16 15 14 18 18 H 1.08007 * 120.00018 * 5.00519 * 17 16 15 19 19 C 1.37878 * 120.00361 * 185.00492 * 17 16 15 20 20 N 1.31517 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00097 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47319 * 60.00109 * 21 19 17 23 23 H 1.48506 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46884 * 299.99639 * 21 19 17 25 25 C 1.46852 * 111.19869 * 298.25559 * 15 14 13 26 26 H 1.09005 * 109.46708 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47042 * 60.00543 * 1 2 3 28 28 H 1.08997 * 109.47513 * 299.99613 * 1 2 3 29 29 H 1.08998 * 109.47042 * 119.99457 * 2 1 3 30 30 H 1.08998 * 109.47567 * 239.99601 * 2 1 3 31 31 H 1.09000 * 109.47244 * 300.00225 * 3 2 1 32 32 H 1.09002 * 109.47148 * 59.99909 * 3 2 1 33 33 H 1.09001 * 109.47183 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.46963 * 300.00457 * 6 4 3 35 35 H 1.08996 * 109.47253 * 60.00285 * 6 4 3 36 36 H 0.97001 * 120.00315 * 25.00401 * 7 4 3 37 37 H 1.08997 * 109.52707 * 297.50233 * 12 10 8 38 38 H 1.08999 * 109.52600 * 57.69921 * 12 10 8 39 39 H 1.09004 * 109.50496 * 182.40291 * 13 12 10 40 40 H 1.09000 * 109.53451 * 62.30910 * 13 12 10 41 41 H 1.09006 * 109.45901 * 299.16238 * 14 13 12 42 42 H 1.08995 * 109.46053 * 179.19911 * 14 13 12 43 43 H 1.09004 * 109.47260 * 179.31986 * 16 15 14 44 44 H 1.09004 * 109.46825 * 299.31358 * 16 15 14 45 45 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.46355 * 301.73164 * 25 15 14 47 47 H 1.09001 * 109.45025 * 181.75763 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0799 2.8796 0.1264 7 7 4.0587 0.8587 -1.2510 8 6 5.2807 0.2922 -1.2982 9 8 5.9759 0.2662 -0.3047 10 6 5.7838 -0.3080 -2.5858 11 1 5.1110 -1.1047 -2.9032 12 6 5.8408 0.7751 -3.6666 13 6 6.4092 0.1711 -4.9538 14 6 7.7939 -0.4148 -4.6685 15 7 7.6857 -1.4461 -3.6288 16 6 8.9716 -2.1270 -3.4270 17 6 10.0154 -1.1191 -3.0202 18 1 9.7338 -0.0916 -2.8428 19 6 11.3300 -1.5085 -2.8744 20 7 11.6729 -2.7598 -3.0900 21 14 12.6237 -0.2593 -2.3695 22 1 12.2699 0.3120 -1.0453 23 1 13.9480 -0.9256 -2.2827 24 1 12.6816 0.8287 -3.3786 25 6 7.1866 -0.8799 -2.3691 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 5.1699 2.8797 0.1264 34 1 3.7168 3.4689 -0.7157 35 1 3.7162 3.3140 1.0575 36 1 3.5029 0.8799 -2.0457 37 1 4.8367 1.1550 -3.8550 38 1 6.4828 1.5900 -3.3323 39 1 6.4922 0.9475 -5.7144 40 1 5.7466 -0.6177 -5.3098 41 1 8.4599 0.3774 -4.3264 42 1 8.1953 -0.8582 -5.5797 43 1 8.8663 -2.8775 -2.6435 44 1 9.2760 -2.6110 -4.3550 45 1 12.5976 -3.0339 -2.9871 46 1 7.8555 -0.0856 -2.0378 47 1 7.1470 -1.6614 -1.6103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051056854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:18 Heat of formation + Delta-G solvation = -90.338376 kcal Electronic energy + Delta-G solvation = -23159.429357 eV Core-core repulsion = 19953.677876 eV Total energy + Delta-G solvation = -3205.751481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32474 -39.38752 -37.61386 -35.57555 -34.45623 -33.71351 -32.23308 -31.20872 -28.75053 -27.56847 -25.78307 -25.13017 -23.15633 -22.74082 -21.80988 -21.45750 -20.59509 -18.51571 -18.09971 -17.43733 -16.77081 -16.27831 -15.89082 -15.79417 -15.50918 -15.26676 -15.01167 -14.78787 -14.49799 -14.39860 -14.07319 -13.69770 -13.56121 -13.35358 -13.16254 -13.03948 -12.91784 -12.88696 -12.39957 -12.38355 -12.29519 -12.16534 -11.88786 -11.84307 -11.72753 -11.61931 -11.56017 -11.47400 -11.13297 -10.67095 -10.60535 -10.04593 -9.07795 -8.19350 -6.38978 1.31177 1.34251 1.42022 1.66586 2.19974 2.33564 3.04732 3.36369 3.67804 3.74767 3.88794 4.01799 4.08312 4.12575 4.31755 4.33107 4.41296 4.50268 4.51216 4.64539 4.67375 4.78019 4.84074 4.87858 4.91076 4.93717 5.00066 5.03386 5.08777 5.10551 5.16543 5.21035 5.28100 5.29397 5.30777 5.32193 5.35050 5.48372 5.50879 5.63125 5.70175 6.01926 6.20959 6.51278 6.61528 6.81217 7.31863 7.33067 8.82983 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.003730 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.397549 B = 7505.099423 C = 7882.745310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.114 4.114 4 C 0.137 3.863 5 H 0.057 0.943 6 C -0.159 4.159 7 N -0.706 5.706 8 C 0.521 3.479 9 O -0.588 6.588 10 C -0.094 4.094 11 H 0.122 0.878 12 C -0.099 4.099 13 C -0.104 4.104 14 C 0.056 3.944 15 N -0.535 5.535 16 C 0.200 3.800 17 C -0.559 4.559 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.275 1.275 24 H -0.265 1.265 25 C 0.093 3.907 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.416 0.584 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.012 0.988 42 H 0.059 0.941 43 H -0.003 1.003 44 H 0.014 0.986 45 H 0.267 0.733 46 H 0.006 0.994 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.410 11.172 0.628 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.151 4.151 4 C 0.032 3.968 5 H 0.076 0.924 6 C -0.218 4.218 7 N -0.359 5.359 8 C 0.307 3.693 9 O -0.468 6.468 10 C -0.116 4.116 11 H 0.140 0.860 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.072 4.072 15 N -0.259 5.259 16 C 0.073 3.927 17 C -0.598 4.598 18 H 0.068 0.932 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.780 3.220 22 H -0.203 1.203 23 H -0.200 1.200 24 H -0.190 1.190 25 C -0.037 4.037 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.128 0.872 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.015 0.985 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.133 10.681 1.170 26.417 hybrid contribution 1.998 0.574 0.618 2.169 sum -22.135 11.255 1.788 24.896 Atomic orbital electron populations 1.21746 0.94657 1.01824 1.02403 1.21547 0.96684 0.96640 1.01718 1.21861 0.91115 0.97571 1.04589 1.21053 0.95313 0.93951 0.86454 0.92436 1.22138 1.00099 0.96070 1.03455 1.45928 1.16636 1.58860 1.14433 1.20845 0.81600 0.77037 0.89777 1.90701 1.57781 1.59697 1.38628 1.21311 0.97063 1.00103 0.93127 0.86008 1.21541 1.03022 0.95569 0.93551 1.21591 0.94670 1.00741 0.97141 1.22015 0.97679 0.93005 0.94485 1.62396 1.28062 1.28222 1.07203 1.19393 0.85030 0.93120 0.95114 1.21930 0.94444 0.96206 1.47254 0.93233 1.25805 1.00768 0.97138 0.95020 1.70046 1.18901 1.17583 1.49861 0.85659 0.78235 0.79289 0.78849 1.20295 1.20021 1.19026 1.21441 0.94046 0.96730 0.91442 0.92999 0.91711 0.92371 0.93490 0.92104 0.89259 0.89303 0.95389 0.90648 0.90267 0.74681 0.87229 0.93543 0.89125 0.89705 0.97007 0.92257 0.98494 0.96738 0.92455 0.97535 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.65 5.82 30.59 0.18 -1.47 16 3 C -0.11 -1.26 4.75 30.59 0.15 -1.12 16 4 C 0.14 2.53 2.57 44.99 0.12 2.65 16 5 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 6 C -0.16 -2.87 9.48 71.98 0.68 -2.19 16 7 N -0.71 -13.87 4.43 -442.53 -1.96 -15.83 16 8 C 0.52 15.79 7.12 87.66 0.62 16.41 16 9 O -0.59 -24.43 15.65 -3.06 -0.05 -24.47 16 10 C -0.09 -2.82 2.69 -11.49 -0.03 -2.85 16 11 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 12 C -0.10 -2.36 5.16 30.67 0.16 -2.20 16 13 C -0.10 -2.67 6.09 30.65 0.19 -2.48 16 14 C 0.06 2.20 5.03 86.33 0.43 2.63 16 15 N -0.54 -24.15 4.86 -900.93 -4.38 -28.53 16 16 C 0.20 11.22 5.12 85.55 0.44 11.66 16 17 C -0.56 -33.22 7.72 25.60 0.20 -33.03 16 18 H 0.05 2.95 5.86 -2.91 -0.02 2.94 16 19 C 0.01 0.73 5.46 84.65 0.46 1.19 16 20 N -0.92 -57.29 13.29 21.45 0.28 -57.00 16 21 Si 0.96 46.45 29.54 68.60 2.03 48.47 16 22 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 25 C 0.09 4.02 3.69 86.32 0.32 4.33 16 26 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.83 7.75 -2.39 -0.02 0.81 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.42 5.13 8.08 -92.71 -0.75 4.38 16 37 H 0.11 1.57 7.66 -2.39 -0.02 1.56 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.01 0.51 6.73 -2.38 -0.02 0.50 16 42 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 43 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 44 H 0.01 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.01 0.32 6.80 -2.39 -0.02 0.30 16 47 H 0.04 1.97 8.05 -2.39 -0.02 1.95 16 Total: -1.00 -75.57 366.73 0.72 -74.85 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.17 Total: 9.74 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.62 Total: -7.23 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -6.05 Total: -101.36 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.57 0.72 -74.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051056854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.486 kcal (2) G-P(sol) polarization free energy of solvation -75.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds