Wall clock time and date at job start Tue Mar 31 2020 06:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47204 * 2 1 4 4 C 1.52998 * 109.46894 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00283 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00219 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.50208 * 60.00200 * 8 6 5 10 10 C 1.53114 * 109.50243 * 299.92404 * 8 6 5 11 11 C 1.53126 * 109.16239 * 182.36672 * 10 8 6 12 12 C 1.53037 * 109.27880 * 57.65311 * 11 10 8 13 13 N 1.46850 * 109.52028 * 300.82273 * 12 11 10 14 14 C 1.46900 * 110.99740 * 185.83738 * 13 12 11 15 15 C 1.53003 * 109.47361 * 293.95546 * 14 13 12 16 16 C 1.50697 * 109.47136 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00253 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00384 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99674 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46906 * 89.99893 * 20 18 16 22 22 H 1.48495 * 109.47117 * 209.99779 * 20 18 16 23 23 H 1.48501 * 109.47244 * 330.00189 * 20 18 16 24 24 C 1.46929 * 111.22205 * 61.74456 * 13 12 11 25 25 H 1.08990 * 109.47772 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46802 * 300.00491 * 1 2 3 27 27 H 1.09004 * 109.46963 * 59.99878 * 1 2 3 28 28 H 1.09003 * 109.47060 * 239.99994 * 2 1 3 29 29 H 1.08996 * 109.46655 * 120.00123 * 2 1 3 30 30 H 1.09003 * 109.47116 * 60.00029 * 3 2 1 31 31 H 1.08999 * 109.46827 * 300.00105 * 3 2 1 32 32 H 1.09003 * 109.47116 * 60.00150 * 4 3 2 33 33 H 1.09004 * 109.47217 * 300.00088 * 4 3 2 34 34 H 0.96999 * 120.00057 * 0.02562 * 5 4 3 35 35 H 1.09006 * 109.52545 * 302.27007 * 10 8 6 36 36 H 1.09002 * 109.52724 * 62.45754 * 10 8 6 37 37 H 1.08997 * 109.50509 * 177.59319 * 11 10 8 38 38 H 1.09006 * 109.49902 * 297.71480 * 11 10 8 39 39 H 1.08997 * 109.46525 * 60.83781 * 12 11 10 40 40 H 1.08999 * 109.46457 * 180.82041 * 12 11 10 41 41 H 1.09004 * 109.46832 * 53.95757 * 14 13 12 42 42 H 1.08997 * 109.47223 * 173.95226 * 14 13 12 43 43 H 1.09001 * 109.46827 * 299.99840 * 15 14 13 44 44 H 1.08997 * 109.46648 * 60.00186 * 15 14 13 45 45 H 0.96995 * 120.00296 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.51866 * 178.25481 * 24 13 12 47 47 H 1.09007 * 109.45009 * 58.26164 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 5.3835 3.0698 0.0010 7 8 6.1716 2.1479 0.0018 8 6 5.8859 4.4906 0.0009 9 1 5.5222 5.0052 0.8903 10 6 5.3785 5.2122 -1.2506 11 6 5.9415 6.6360 -1.2729 12 6 7.4702 6.5754 -1.2373 13 7 7.9055 5.8767 -0.0213 14 6 9.3674 5.9205 0.1163 15 6 10.0106 5.1165 -1.0155 16 6 11.5103 5.1620 -0.8747 17 1 11.9598 5.7093 -0.0592 18 6 12.3086 4.5042 -1.7862 19 7 13.6174 4.5443 -1.6637 20 14 11.5312 3.5571 -3.1963 21 1 11.3655 4.4576 -4.3655 22 1 12.4070 2.4174 -3.5694 23 1 10.2030 3.0436 -2.7749 24 6 7.4163 4.4914 0.0001 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8909 34 1 3.4282 3.5609 -0.0003 35 1 5.7095 4.6757 -2.1399 36 1 4.2893 5.2514 -1.2321 37 1 5.6184 7.1409 -2.1832 38 1 5.5787 7.1844 -0.4034 39 1 7.8330 6.0389 -2.1140 40 1 7.8740 7.5879 -1.2384 41 1 9.7063 6.9552 0.0651 42 1 9.6551 5.4911 1.0759 43 1 9.6717 4.0818 -0.9642 44 1 9.7229 5.5460 -1.9751 45 1 14.1790 4.0812 -2.3047 46 1 7.7803 3.9904 0.8970 47 1 7.7792 3.9646 -0.8826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051060936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:09 Heat of formation + Delta-G solvation = -67.227760 kcal Electronic energy + Delta-G solvation = -22651.639907 eV Core-core repulsion = 19446.890578 eV Total energy + Delta-G solvation = -3204.749330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22336 -38.29756 -36.41543 -34.45596 -33.81293 -32.42319 -31.01129 -29.51725 -28.98866 -25.34228 -24.63771 -22.96256 -22.73490 -21.70837 -21.11637 -20.08690 -18.92870 -17.23447 -16.66363 -16.24645 -16.14896 -15.29037 -14.84629 -14.57255 -14.42185 -14.22684 -13.97694 -13.84490 -13.42831 -13.35906 -13.02597 -12.73047 -12.54796 -12.41031 -12.17202 -11.87320 -11.57576 -11.54290 -11.48892 -11.25776 -11.05846 -10.94350 -10.86698 -10.59148 -10.37855 -10.22959 -9.80811 -9.72413 -9.60389 -9.19947 -9.17569 -8.50494 -7.64967 -6.02104 -3.99800 2.66194 3.03589 3.32183 3.40391 3.46685 4.37912 4.41889 4.48174 4.50546 4.61784 4.69315 4.81681 4.93611 4.97523 5.10366 5.21012 5.29581 5.30447 5.31994 5.36436 5.47501 5.53075 5.60604 5.64604 5.70601 5.79683 5.82546 5.87310 5.89057 5.97303 6.04017 6.22284 6.24350 6.28883 6.35671 6.42226 6.53254 6.76946 7.22839 7.27339 7.37865 7.52466 7.67017 7.89035 8.21294 8.55596 9.02735 9.61004 11.11234 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.003470 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.083475 B = 8066.527588 C = 8855.976810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.736 5.736 6 C 0.517 3.483 7 O -0.532 6.532 8 C -0.103 4.103 9 H 0.103 0.897 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.048 3.952 13 N -0.542 5.542 14 C 0.068 3.932 15 C -0.047 4.047 16 C -0.516 4.516 17 H 0.073 0.927 18 C 0.068 3.932 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.073 3.927 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.020 0.980 44 H 0.010 0.990 45 H 0.263 0.737 46 H 0.079 0.921 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.088 -2.212 2.358 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.007 4.007 5 N -0.389 5.389 6 C 0.303 3.697 7 O -0.407 6.407 8 C -0.124 4.124 9 H 0.121 0.879 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.080 4.080 13 N -0.266 5.266 14 C -0.059 4.059 15 C -0.086 4.086 16 C -0.555 4.555 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.055 4.055 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -27.534 -2.711 2.689 27.798 hybrid contribution -0.176 -0.678 -1.539 1.691 sum -27.710 -3.390 1.150 27.941 Atomic orbital electron populations 1.21765 0.95529 1.01807 1.01853 1.21443 0.96056 0.95961 1.02634 1.21826 0.94257 0.98063 1.02726 1.21356 0.93518 0.83344 1.02467 1.46030 1.07308 1.08596 1.76938 1.20803 0.81865 0.91759 0.75262 1.90742 1.55200 1.46521 1.48238 1.21367 0.98460 0.91787 1.00835 0.87894 1.21558 0.99632 0.96748 0.96807 1.21580 0.95870 0.95655 1.01971 1.22096 0.94365 0.99340 0.92246 1.62314 1.13463 1.14146 1.36649 1.22140 0.83138 1.00781 0.99821 1.20167 0.97628 0.96043 0.94720 1.21036 0.88929 1.32590 1.12934 0.90891 1.25015 0.94692 0.95964 0.97674 1.69909 1.03435 1.43842 1.37016 0.86815 0.79869 0.80014 0.82874 1.20404 1.21294 1.19042 1.21795 0.90830 0.90130 1.02778 0.92592 0.92683 0.92700 0.91616 0.91599 0.91286 0.91308 0.91616 0.91551 0.76703 0.91727 0.91827 0.91528 0.91092 0.94360 0.90721 0.91291 0.91225 0.96193 0.97150 0.92768 0.90251 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.87 16 3 C -0.13 -0.79 5.33 -26.73 -0.14 -0.93 16 4 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 5 N -0.74 -7.17 5.46 -60.29 -0.33 -7.50 16 6 C 0.52 7.19 7.16 -10.99 -0.08 7.11 16 7 O -0.53 -9.95 15.98 5.55 0.09 -9.86 16 8 C -0.10 -1.34 2.69 -91.69 -0.25 -1.58 16 9 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 10 C -0.11 -1.21 5.16 -26.61 -0.14 -1.35 16 11 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 12 C 0.05 0.74 5.05 -3.83 -0.02 0.72 16 13 N -0.54 -9.42 4.86 -234.60 -1.14 -10.56 16 14 C 0.07 1.41 5.30 -3.82 -0.02 1.39 16 15 C -0.05 -1.16 3.34 -27.88 -0.09 -1.26 16 16 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 17 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -28.56 13.96 55.43 0.77 -27.79 16 20 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.27 -6.85 6.54 56.52 0.37 -6.48 16 24 C 0.07 1.28 3.42 -3.79 -0.01 1.26 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 2.68 7.95 -40.82 -0.32 2.36 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.67 6.75 -51.93 -0.35 0.31 16 40 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 41 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.02 0.52 5.56 -51.93 -0.29 0.23 16 44 H 0.01 0.25 6.11 -51.93 -0.32 -0.06 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 47 H 0.05 0.99 6.55 -51.92 -0.34 0.65 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -34.04 363.74 -9.73 -43.77 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.78 Total: -1.85 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.84 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.70 Total: -45.84 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.04 -9.73 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051060936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.455 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds