Wall clock time and date at job start Tue Mar 31 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47204 * 2 1 4 4 C 1.52998 * 109.46894 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00283 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99760 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00219 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.50208 * 60.00200 * 8 6 5 10 10 C 1.53114 * 109.50243 * 299.92404 * 8 6 5 11 11 C 1.53126 * 109.16239 * 182.36672 * 10 8 6 12 12 C 1.53037 * 109.27880 * 57.65311 * 11 10 8 13 13 N 1.46850 * 109.52028 * 300.82273 * 12 11 10 14 14 C 1.46900 * 110.99740 * 185.83738 * 13 12 11 15 15 C 1.53003 * 109.47361 * 293.95546 * 14 13 12 16 16 C 1.50697 * 109.47136 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00253 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00384 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99674 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46906 * 89.99893 * 20 18 16 22 22 H 1.48495 * 109.47117 * 209.99779 * 20 18 16 23 23 H 1.48501 * 109.47244 * 330.00189 * 20 18 16 24 24 C 1.46929 * 111.22205 * 61.74456 * 13 12 11 25 25 H 1.08990 * 109.47772 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46802 * 300.00491 * 1 2 3 27 27 H 1.09004 * 109.46963 * 59.99878 * 1 2 3 28 28 H 1.09003 * 109.47060 * 239.99994 * 2 1 3 29 29 H 1.08996 * 109.46655 * 120.00123 * 2 1 3 30 30 H 1.09003 * 109.47116 * 60.00029 * 3 2 1 31 31 H 1.08999 * 109.46827 * 300.00105 * 3 2 1 32 32 H 1.09003 * 109.47116 * 60.00150 * 4 3 2 33 33 H 1.09004 * 109.47217 * 300.00088 * 4 3 2 34 34 H 0.96999 * 120.00057 * 0.02562 * 5 4 3 35 35 H 1.09006 * 109.52545 * 302.27007 * 10 8 6 36 36 H 1.09002 * 109.52724 * 62.45754 * 10 8 6 37 37 H 1.08997 * 109.50509 * 177.59319 * 11 10 8 38 38 H 1.09006 * 109.49902 * 297.71480 * 11 10 8 39 39 H 1.08997 * 109.46525 * 60.83781 * 12 11 10 40 40 H 1.08999 * 109.46457 * 180.82041 * 12 11 10 41 41 H 1.09004 * 109.46832 * 53.95757 * 14 13 12 42 42 H 1.08997 * 109.47223 * 173.95226 * 14 13 12 43 43 H 1.09001 * 109.46827 * 299.99840 * 15 14 13 44 44 H 1.08997 * 109.46648 * 60.00186 * 15 14 13 45 45 H 0.96995 * 120.00296 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.51866 * 178.25481 * 24 13 12 47 47 H 1.09007 * 109.45009 * 58.26164 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 5.3835 3.0698 0.0010 7 8 6.1716 2.1479 0.0018 8 6 5.8859 4.4906 0.0009 9 1 5.5222 5.0052 0.8903 10 6 5.3785 5.2122 -1.2506 11 6 5.9415 6.6360 -1.2729 12 6 7.4702 6.5754 -1.2373 13 7 7.9055 5.8767 -0.0213 14 6 9.3674 5.9205 0.1163 15 6 10.0106 5.1165 -1.0155 16 6 11.5103 5.1620 -0.8747 17 1 11.9598 5.7093 -0.0592 18 6 12.3086 4.5042 -1.7862 19 7 13.6174 4.5443 -1.6637 20 14 11.5312 3.5571 -3.1963 21 1 11.3655 4.4576 -4.3655 22 1 12.4070 2.4174 -3.5694 23 1 10.2030 3.0436 -2.7749 24 6 7.4163 4.4914 0.0001 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8909 34 1 3.4282 3.5609 -0.0003 35 1 5.7095 4.6757 -2.1399 36 1 4.2893 5.2514 -1.2321 37 1 5.6184 7.1409 -2.1832 38 1 5.5787 7.1844 -0.4034 39 1 7.8330 6.0389 -2.1140 40 1 7.8740 7.5879 -1.2384 41 1 9.7063 6.9552 0.0651 42 1 9.6551 5.4911 1.0759 43 1 9.6717 4.0818 -0.9642 44 1 9.7229 5.5460 -1.9751 45 1 14.1790 4.0812 -2.3047 46 1 7.7803 3.9904 0.8970 47 1 7.7792 3.9646 -0.8826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051060936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:08 Heat of formation + Delta-G solvation = -91.563140 kcal Electronic energy + Delta-G solvation = -22652.695168 eV Core-core repulsion = 19446.890578 eV Total energy + Delta-G solvation = -3205.804591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35081 -39.56406 -37.16204 -35.97211 -34.80072 -34.29029 -32.14163 -31.30836 -29.75517 -27.03316 -25.54747 -24.48715 -23.72879 -22.60508 -22.27011 -21.18951 -20.24953 -19.12633 -18.05910 -17.20976 -16.92019 -16.50740 -16.32974 -16.02522 -15.75952 -15.31138 -15.09467 -15.00102 -14.70590 -14.49118 -14.33049 -14.21411 -13.66418 -13.56530 -13.30860 -13.22869 -12.85325 -12.54846 -12.45857 -12.41344 -12.09355 -12.02245 -11.98641 -11.86697 -11.69090 -11.55867 -11.51065 -11.49870 -11.23993 -10.82619 -10.74003 -10.12995 -9.20289 -8.37303 -6.40280 1.22679 1.27157 1.38530 1.58494 2.11384 2.26594 2.97102 3.07758 3.59840 3.78446 3.86789 3.93148 4.01610 4.14485 4.18114 4.25508 4.36150 4.43163 4.43514 4.51274 4.59949 4.63856 4.67452 4.73614 4.81648 4.91929 4.92071 4.92724 4.94745 5.02129 5.05736 5.10281 5.16000 5.26150 5.32899 5.35652 5.35940 5.42129 5.44426 5.47846 5.53139 6.01686 6.19917 6.26538 6.53382 6.67744 7.24051 7.24227 8.79211 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.003470 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.083475 B = 8066.527588 C = 8855.976810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.515 3.485 7 O -0.591 6.591 8 C -0.093 4.093 9 H 0.131 0.869 10 C -0.106 4.106 11 C -0.103 4.103 12 C 0.038 3.962 13 N -0.528 5.528 14 C 0.076 3.924 15 C -0.035 4.035 16 C -0.528 4.528 17 H 0.040 0.960 18 C 0.011 3.989 19 N -0.945 5.945 20 Si 0.943 3.057 21 H -0.260 1.260 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.075 3.925 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.419 0.581 35 H 0.046 0.954 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.014 0.986 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.005 0.995 44 H 0.014 0.986 45 H 0.268 0.732 46 H 0.057 0.943 47 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.092 -1.250 1.581 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.009 4.009 5 N -0.365 5.365 6 C 0.302 3.698 7 O -0.471 6.471 8 C -0.114 4.114 9 H 0.148 0.852 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.090 4.090 13 N -0.251 5.251 14 C -0.052 4.052 15 C -0.074 4.074 16 C -0.566 4.566 17 H 0.059 0.941 18 C -0.187 4.187 19 N -0.585 5.585 20 Si 0.767 3.233 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.054 4.054 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.032 0.968 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.024 0.976 44 H 0.033 0.967 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -31.609 -1.712 1.912 31.713 hybrid contribution 1.100 -0.969 -1.228 1.912 sum -30.508 -2.680 0.683 30.633 Atomic orbital electron populations 1.21747 0.94591 1.02084 1.02327 1.21460 0.96820 0.95831 1.02230 1.21755 0.91400 0.98442 1.04004 1.21425 0.95758 0.82587 1.01100 1.45843 1.06193 1.09733 1.74750 1.20993 0.82760 0.91466 0.74622 1.90727 1.56955 1.48108 1.51292 1.21302 0.94846 0.91940 1.03356 0.85174 1.21612 1.02296 0.95880 0.94575 1.21570 0.92058 0.96215 1.04209 1.22320 0.97897 0.98750 0.89993 1.62367 1.10654 1.14145 1.37924 1.21933 0.85515 1.00039 0.97685 1.20033 0.94859 0.95964 0.96557 1.21368 0.91421 1.31936 1.11904 0.94136 1.25898 0.95147 0.97061 1.00592 1.70035 1.04912 1.45126 1.38439 0.85761 0.78718 0.78951 0.79829 1.18471 1.20405 1.19173 1.21717 0.94409 0.89327 0.99955 0.92514 0.92150 0.92237 0.92175 0.92034 0.89896 0.89998 0.93217 0.92915 0.74355 0.93562 0.87266 0.88961 0.89117 0.96780 0.90114 0.90830 0.92218 0.97650 0.96748 0.92350 0.92446 0.97106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.13 -1.25 5.93 30.60 0.18 -1.06 16 3 C -0.12 -1.10 5.33 30.59 0.16 -0.94 16 4 C 0.12 1.94 5.67 86.38 0.49 2.43 16 5 N -0.71 -12.13 5.46 -463.06 -2.53 -14.66 16 6 C 0.51 13.78 7.16 87.66 0.63 14.41 16 7 O -0.59 -22.74 15.98 -3.05 -0.05 -22.79 16 8 C -0.09 -2.23 2.69 -11.49 -0.03 -2.26 16 9 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 10 C -0.11 -1.95 5.16 30.67 0.16 -1.79 16 11 C -0.10 -1.92 6.09 30.65 0.19 -1.73 16 12 C 0.04 1.11 5.05 86.33 0.44 1.55 16 13 N -0.53 -18.06 4.86 -896.13 -4.35 -22.41 16 14 C 0.08 3.22 5.30 86.30 0.46 3.68 16 15 C -0.04 -1.80 3.34 29.85 0.10 -1.70 16 16 C -0.53 -32.06 9.66 25.60 0.25 -31.81 16 17 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 18 C 0.01 0.65 5.47 84.66 0.46 1.11 16 19 N -0.94 -61.27 13.96 21.45 0.30 -60.97 16 20 Si 0.94 47.91 27.47 68.60 1.88 49.79 16 21 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.27 -13.53 6.54 99.48 0.65 -12.88 16 24 C 0.07 2.63 3.42 86.31 0.29 2.93 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.04 16 34 H 0.42 3.80 7.95 -92.71 -0.74 3.06 16 35 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.11 1.09 7.65 -2.39 -0.02 1.07 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.01 0.48 6.75 -2.39 -0.02 0.46 16 40 H 0.08 2.24 8.06 -2.39 -0.02 2.22 16 41 H 0.07 3.02 8.06 -2.39 -0.02 3.00 16 42 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.01 0.28 5.56 -2.39 -0.01 0.27 16 44 H 0.01 0.72 6.11 -2.39 -0.01 0.70 16 45 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 46 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 47 H 0.01 0.45 6.55 -2.38 -0.02 0.44 16 Total: -1.00 -78.22 363.74 -0.13 -78.36 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.13 Total: 8.33 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.49 Total: -15.65 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -6.58 Total: -98.04 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.88 Total: 49.79 kcal Total: -78.22 -0.13 -78.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051060936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.206 kcal (2) G-P(sol) polarization free energy of solvation -78.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds