Wall clock time and date at job start Tue Mar 31 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 C 1.52999 * 109.47185 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46986 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99307 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00711 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99619 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.53326 * 299.90418 * 8 6 5 10 10 C 1.53120 * 109.50132 * 60.00033 * 8 6 5 11 11 C 1.53123 * 109.21163 * 177.62791 * 10 8 6 12 12 C 1.53037 * 109.27398 * 302.31409 * 11 10 8 13 13 N 1.46848 * 109.52381 * 59.18254 * 12 11 10 14 14 C 1.46900 * 110.99918 * 174.15634 * 13 12 11 15 15 C 1.53002 * 109.47236 * 293.95281 * 14 13 12 16 16 C 1.50698 * 109.47011 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00384 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99678 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99994 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00230 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47514 * 89.99739 * 20 18 16 22 22 H 1.48498 * 109.47122 * 209.99830 * 20 18 16 23 23 H 1.48503 * 109.47245 * 329.99729 * 20 18 16 24 24 C 1.46845 * 111.19518 * 298.25146 * 13 12 11 25 25 H 1.08994 * 109.47175 * 299.99984 * 1 2 3 26 26 H 1.09001 * 109.47250 * 60.00121 * 1 2 3 27 27 H 1.08999 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46780 * 240.00211 * 2 1 3 29 29 H 1.08991 * 109.47260 * 119.99866 * 2 1 3 30 30 H 1.08994 * 109.47143 * 59.99996 * 3 2 1 31 31 H 1.09001 * 109.47020 * 300.00019 * 3 2 1 32 32 H 1.08994 * 109.47345 * 59.99798 * 4 3 2 33 33 H 1.09001 * 109.46894 * 299.99775 * 4 3 2 34 34 H 0.96994 * 119.99882 * 359.97438 * 5 4 3 35 35 H 1.09002 * 109.52427 * 57.69065 * 10 8 6 36 36 H 1.08995 * 109.52208 * 297.56384 * 10 8 6 37 37 H 1.08996 * 109.50077 * 62.25431 * 11 10 8 38 38 H 1.08992 * 109.50259 * 182.37210 * 11 10 8 39 39 H 1.09006 * 109.45986 * 179.19524 * 12 11 10 40 40 H 1.08996 * 109.46322 * 299.16841 * 12 11 10 41 41 H 1.09004 * 109.47213 * 53.94837 * 14 13 12 42 42 H 1.08999 * 109.47347 * 173.94985 * 14 13 12 43 43 H 1.08992 * 109.47277 * 299.99745 * 15 14 13 44 44 H 1.09001 * 109.46868 * 60.00023 * 15 14 13 45 45 H 0.96999 * 120.00386 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.45905 * 181.76430 * 24 13 12 47 47 H 1.09002 * 109.46166 * 301.73872 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0700 0.0001 7 8 6.1715 2.1483 0.0001 8 6 5.8857 4.4909 0.0001 9 1 5.5244 5.0052 -0.8904 10 6 5.3756 5.2134 1.2501 11 6 5.9379 6.6374 1.2737 12 6 7.4668 6.5774 1.2427 13 7 7.9059 5.8786 0.0281 14 6 9.3682 5.9230 -0.1052 15 6 9.8158 7.3680 -0.3347 16 6 11.3159 7.4136 -0.4708 17 1 11.8924 6.5031 -0.4011 18 6 11.9523 8.6178 -0.6854 19 7 13.2614 8.6576 -0.8047 20 14 10.9551 10.1927 -0.8067 21 1 10.8113 10.7929 0.5440 22 1 11.6506 11.1512 -1.7026 23 1 9.6107 9.8862 -1.3578 24 6 7.4173 4.4940 0.0061 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 3.4279 3.5610 0.0003 35 1 5.7042 4.6771 2.1404 36 1 4.2865 5.2521 1.2294 37 1 5.5775 7.1854 0.4032 38 1 5.6119 7.1423 2.1830 39 1 7.8701 7.5901 1.2450 40 1 7.8271 6.0410 2.1205 41 1 9.8280 5.5407 0.8062 42 1 9.6747 5.3089 -0.9520 43 1 9.3561 7.7504 -1.2460 44 1 9.5093 7.9821 0.5122 45 1 13.7092 9.5047 -0.9560 46 1 7.7848 3.9934 -0.8898 47 1 7.7778 3.9676 0.8899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051060939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:12 Heat of formation + Delta-G solvation = -67.881245 kcal Electronic energy + Delta-G solvation = -22220.255107 eV Core-core repulsion = 19015.477441 eV Total energy + Delta-G solvation = -3204.777667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28406 -38.25164 -36.48248 -34.43908 -33.88246 -32.47443 -31.03766 -29.88154 -29.00006 -25.28670 -24.70093 -23.12327 -22.60723 -21.76757 -20.89402 -19.76392 -19.53278 -17.25936 -16.68444 -16.31473 -16.23352 -15.37458 -14.96493 -14.66868 -14.33522 -14.25845 -14.05351 -13.91953 -13.62114 -13.22929 -13.01132 -12.78160 -12.75109 -12.53175 -12.22914 -11.94642 -11.62945 -11.59603 -11.43027 -11.36094 -11.10883 -10.99829 -10.83303 -10.69640 -10.38265 -9.94603 -9.83761 -9.78145 -9.55285 -9.28853 -9.15983 -8.49393 -7.81297 -6.00917 -3.98786 2.55884 2.95231 3.33625 3.41187 3.47075 4.29431 4.35932 4.45306 4.48955 4.55987 4.62824 4.75364 4.86572 4.92059 5.05257 5.15208 5.24640 5.25410 5.31540 5.33324 5.41663 5.46083 5.54877 5.59086 5.64969 5.74729 5.77043 5.82364 5.83886 5.87416 5.98144 6.11614 6.18320 6.24423 6.27666 6.39242 6.45936 6.81223 7.18097 7.28626 7.35840 7.64097 7.66754 7.88711 8.10575 8.57206 9.03843 9.61426 11.12509 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042065 B = 0.002640 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.480461 B =10603.799376 C =10969.162122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.117 3.883 5 N -0.735 5.735 6 C 0.520 3.480 7 O -0.537 6.537 8 C -0.104 4.104 9 H 0.106 0.894 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.049 3.951 13 N -0.542 5.542 14 C 0.072 3.928 15 C -0.006 4.006 16 C -0.521 4.521 17 H 0.071 0.929 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.263 1.263 24 C 0.077 3.923 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.068 0.932 43 H 0.025 0.975 44 H 0.011 0.989 45 H 0.263 0.737 46 H 0.079 0.921 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.387 -11.952 3.524 30.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.170 4.170 4 C -0.007 4.007 5 N -0.388 5.388 6 C 0.306 3.694 7 O -0.413 6.413 8 C -0.125 4.125 9 H 0.124 0.876 10 C -0.146 4.146 11 C -0.153 4.153 12 C -0.079 4.079 13 N -0.267 5.267 14 C -0.054 4.054 15 C -0.044 4.044 16 C -0.559 4.559 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.187 1.187 24 C -0.052 4.052 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -26.843 -12.278 3.089 29.679 hybrid contribution -0.330 0.772 0.615 1.041 sum -27.173 -11.505 3.704 29.740 Atomic orbital electron populations 1.21766 0.95493 1.01830 1.01896 1.21439 0.96103 0.95916 1.02595 1.21832 0.94205 0.98108 1.02808 1.21359 0.93603 0.83265 1.02424 1.46038 1.07336 1.08696 1.76687 1.20782 0.81877 0.91670 0.75064 1.90708 1.55272 1.46603 1.48729 1.21386 0.98198 0.91790 1.01160 0.87638 1.21554 0.99732 0.96766 0.96541 1.21592 0.95824 0.95586 1.02249 1.22155 0.94511 1.00331 0.90944 1.61994 1.13851 1.13498 1.37344 1.22110 0.83025 1.00566 0.99745 1.19575 0.96666 0.91483 0.96686 1.21101 0.90095 0.95347 1.49362 0.91116 1.25006 0.94757 0.99069 0.94622 1.69919 1.08025 1.26276 1.50107 0.86761 0.81014 0.83273 0.78187 1.20422 1.21470 1.18714 1.21778 0.91484 0.90041 1.01894 0.92679 0.92659 0.92577 0.91603 0.91638 0.91274 0.91232 0.91538 0.91618 0.76584 0.91835 0.91799 0.90864 0.91429 0.89743 0.95261 0.95497 0.91341 0.95698 0.97082 0.92775 0.90276 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.12 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.13 -0.70 5.33 -26.73 -0.14 -0.84 16 4 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 5 N -0.73 -6.44 5.46 -60.29 -0.33 -6.77 16 6 C 0.52 6.50 7.16 -10.98 -0.08 6.43 16 7 O -0.54 -8.97 15.99 5.56 0.09 -8.88 16 8 C -0.10 -1.25 2.70 -91.62 -0.25 -1.50 16 9 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 10 C -0.11 -1.10 5.16 -26.61 -0.14 -1.24 16 11 C -0.11 -1.32 6.09 -26.65 -0.16 -1.49 16 12 C 0.05 0.76 5.29 -3.83 -0.02 0.74 16 13 N -0.54 -9.52 4.66 -234.58 -1.09 -10.61 16 14 C 0.07 1.52 4.90 -3.82 -0.02 1.50 16 15 C -0.01 -0.16 3.98 -27.88 -0.11 -0.27 16 16 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 20 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 24 C 0.08 1.21 4.04 -3.77 -0.02 1.19 16 25 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.40 2.41 7.94 -40.82 -0.32 2.09 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.47 7.64 -51.93 -0.40 0.08 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.43 6.22 -51.93 -0.32 1.10 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.58 8.12 -51.93 -0.42 0.15 16 42 H 0.07 1.46 7.98 -51.93 -0.41 1.05 16 43 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 44 H 0.01 0.26 5.86 -51.93 -0.30 -0.04 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 47 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -33.37 366.91 -9.77 -43.14 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.90 Total: -3.00 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.18 Total: -9.23 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.65 Total: -44.88 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.37 -9.77 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051060939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.737 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds