Wall clock time and date at job start Tue Mar 31 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47000 * 2 1 4 4 C 1.52999 * 109.47185 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46986 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99307 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00711 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99619 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.53326 * 299.90418 * 8 6 5 10 10 C 1.53120 * 109.50132 * 60.00033 * 8 6 5 11 11 C 1.53123 * 109.21163 * 177.62791 * 10 8 6 12 12 C 1.53037 * 109.27398 * 302.31409 * 11 10 8 13 13 N 1.46848 * 109.52381 * 59.18254 * 12 11 10 14 14 C 1.46900 * 110.99918 * 174.15634 * 13 12 11 15 15 C 1.53002 * 109.47236 * 293.95281 * 14 13 12 16 16 C 1.50698 * 109.47011 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00384 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99678 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99994 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00230 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47514 * 89.99739 * 20 18 16 22 22 H 1.48498 * 109.47122 * 209.99830 * 20 18 16 23 23 H 1.48503 * 109.47245 * 329.99729 * 20 18 16 24 24 C 1.46845 * 111.19518 * 298.25146 * 13 12 11 25 25 H 1.08994 * 109.47175 * 299.99984 * 1 2 3 26 26 H 1.09001 * 109.47250 * 60.00121 * 1 2 3 27 27 H 1.08999 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46780 * 240.00211 * 2 1 3 29 29 H 1.08991 * 109.47260 * 119.99866 * 2 1 3 30 30 H 1.08994 * 109.47143 * 59.99996 * 3 2 1 31 31 H 1.09001 * 109.47020 * 300.00019 * 3 2 1 32 32 H 1.08994 * 109.47345 * 59.99798 * 4 3 2 33 33 H 1.09001 * 109.46894 * 299.99775 * 4 3 2 34 34 H 0.96994 * 119.99882 * 359.97438 * 5 4 3 35 35 H 1.09002 * 109.52427 * 57.69065 * 10 8 6 36 36 H 1.08995 * 109.52208 * 297.56384 * 10 8 6 37 37 H 1.08996 * 109.50077 * 62.25431 * 11 10 8 38 38 H 1.08992 * 109.50259 * 182.37210 * 11 10 8 39 39 H 1.09006 * 109.45986 * 179.19524 * 12 11 10 40 40 H 1.08996 * 109.46322 * 299.16841 * 12 11 10 41 41 H 1.09004 * 109.47213 * 53.94837 * 14 13 12 42 42 H 1.08999 * 109.47347 * 173.94985 * 14 13 12 43 43 H 1.08992 * 109.47277 * 299.99745 * 15 14 13 44 44 H 1.09001 * 109.46868 * 60.00023 * 15 14 13 45 45 H 0.96999 * 120.00386 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.45905 * 181.76430 * 24 13 12 47 47 H 1.09002 * 109.46166 * 301.73872 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0700 0.0001 7 8 6.1715 2.1483 0.0001 8 6 5.8857 4.4909 0.0001 9 1 5.5244 5.0052 -0.8904 10 6 5.3756 5.2134 1.2501 11 6 5.9379 6.6374 1.2737 12 6 7.4668 6.5774 1.2427 13 7 7.9059 5.8786 0.0281 14 6 9.3682 5.9230 -0.1052 15 6 9.8158 7.3680 -0.3347 16 6 11.3159 7.4136 -0.4708 17 1 11.8924 6.5031 -0.4011 18 6 11.9523 8.6178 -0.6854 19 7 13.2614 8.6576 -0.8047 20 14 10.9551 10.1927 -0.8067 21 1 10.8113 10.7929 0.5440 22 1 11.6506 11.1512 -1.7026 23 1 9.6107 9.8862 -1.3578 24 6 7.4173 4.4940 0.0061 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 3.4279 3.5610 0.0003 35 1 5.7042 4.6771 2.1404 36 1 4.2865 5.2521 1.2294 37 1 5.5775 7.1854 0.4032 38 1 5.6119 7.1423 2.1830 39 1 7.8701 7.5901 1.2450 40 1 7.8271 6.0410 2.1205 41 1 9.8280 5.5407 0.8062 42 1 9.6747 5.3089 -0.9520 43 1 9.3561 7.7504 -1.2460 44 1 9.5093 7.9821 0.5122 45 1 13.7092 9.5047 -0.9560 46 1 7.7848 3.9934 -0.8898 47 1 7.7778 3.9676 0.8899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051060939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:12 Heat of formation + Delta-G solvation = -91.091162 kcal Electronic energy + Delta-G solvation = -22221.261565 eV Core-core repulsion = 19015.477441 eV Total energy + Delta-G solvation = -3205.784124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30933 -39.44940 -37.15126 -35.94196 -34.79796 -34.26110 -32.10521 -31.62647 -29.70941 -26.99002 -25.60451 -24.31897 -23.67080 -22.39712 -22.15029 -21.17010 -20.55221 -19.06403 -18.04564 -17.17129 -16.90915 -16.54650 -16.31704 -15.99737 -15.82532 -15.32509 -15.18898 -14.72990 -14.54153 -14.45346 -14.36489 -14.34556 -13.84200 -13.46186 -13.28201 -13.25849 -12.83443 -12.52243 -12.45074 -12.08626 -12.05988 -12.01178 -11.96654 -11.81913 -11.65184 -11.59251 -11.50079 -11.35151 -11.24711 -10.77856 -10.69045 -10.11902 -9.28443 -8.29681 -6.34786 1.36847 1.40011 1.53394 1.58633 2.10960 2.37615 3.01923 3.05492 3.59253 3.76972 3.87178 3.91794 4.02671 4.14386 4.17672 4.25106 4.30606 4.40550 4.44457 4.51808 4.59649 4.64831 4.67864 4.75455 4.78797 4.91841 4.93115 4.94388 4.96742 4.99487 5.06563 5.10144 5.16940 5.26843 5.26935 5.36652 5.41311 5.43722 5.48140 5.49482 5.62885 6.09667 6.18870 6.30887 6.53043 6.72694 7.23097 7.29719 8.87217 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042065 B = 0.002640 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.480461 B =10603.799376 C =10969.162122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.116 3.884 5 N -0.714 5.714 6 C 0.520 3.480 7 O -0.588 6.588 8 C -0.095 4.095 9 H 0.123 0.877 10 C -0.102 4.102 11 C -0.106 4.106 12 C 0.040 3.960 13 N -0.539 5.539 14 C 0.081 3.919 15 C 0.005 3.995 16 C -0.537 4.537 17 H 0.027 0.973 18 C 0.004 3.996 19 N -0.952 5.952 20 Si 0.956 3.044 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.244 1.244 24 C 0.078 3.922 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.418 0.582 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.023 0.977 41 H 0.012 0.988 42 H 0.055 0.945 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.267 0.733 46 H 0.060 0.940 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.657 -10.361 3.913 33.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.008 4.008 5 N -0.366 5.366 6 C 0.306 3.694 7 O -0.468 6.468 8 C -0.116 4.116 9 H 0.141 0.859 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.088 4.088 13 N -0.264 5.264 14 C -0.046 4.046 15 C -0.033 4.033 16 C -0.576 4.576 17 H 0.045 0.955 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.167 1.167 24 C -0.050 4.050 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -31.183 -10.687 3.488 33.147 hybrid contribution 1.068 0.159 0.502 1.191 sum -30.114 -10.528 3.990 32.150 Atomic orbital electron populations 1.21752 0.94755 1.02067 1.02261 1.21453 0.96695 0.95804 1.02306 1.21762 0.91658 0.98445 1.03908 1.21424 0.95589 0.82495 1.01263 1.45876 1.06305 1.09791 1.74673 1.20850 0.82717 0.91203 0.74587 1.90698 1.56812 1.47927 1.51406 1.21307 0.95003 0.92126 1.03206 0.85935 1.21577 1.02162 0.95379 0.94850 1.21575 0.92098 0.96722 1.03966 1.22325 0.97899 0.98951 0.89582 1.61970 1.10930 1.14689 1.38791 1.21813 0.85885 0.98340 0.98599 1.19411 0.93382 0.93600 0.96914 1.21424 0.92556 0.94068 1.49511 0.95496 1.26052 0.95955 1.03366 0.93932 1.70078 1.10202 1.27638 1.51288 0.85567 0.79779 0.77793 0.78976 1.18878 1.20918 1.16738 1.21737 0.94594 0.88512 1.00206 0.92242 0.92322 0.92500 0.92034 0.91954 0.90006 0.90175 0.92885 0.92788 0.74465 0.92579 0.87551 0.90021 0.88849 0.91036 0.95908 0.96930 0.92607 0.95638 0.95921 0.92416 0.92104 0.96339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.31 16 2 C -0.12 -1.05 5.93 30.59 0.18 -0.87 16 3 C -0.12 -0.95 5.33 30.59 0.16 -0.78 16 4 C 0.12 1.69 5.67 86.38 0.49 2.18 16 5 N -0.71 -10.67 5.46 -463.06 -2.53 -13.20 16 6 C 0.52 12.31 7.16 87.66 0.63 12.94 16 7 O -0.59 -19.95 15.99 -3.02 -0.05 -20.00 16 8 C -0.09 -2.09 2.70 -11.44 -0.03 -2.12 16 9 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 10 C -0.10 -1.70 5.16 30.68 0.16 -1.54 16 11 C -0.11 -2.04 6.09 30.65 0.19 -1.85 16 12 C 0.04 1.19 5.29 86.33 0.46 1.64 16 13 N -0.54 -18.73 4.66 -896.08 -4.17 -22.90 16 14 C 0.08 3.53 4.90 86.30 0.42 3.96 16 15 C 0.00 0.23 3.98 29.85 0.12 0.35 16 16 C -0.54 -32.28 9.66 25.60 0.25 -32.03 16 17 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 18 C 0.00 0.22 5.47 84.66 0.46 0.68 16 19 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 20 Si 0.96 44.95 27.47 68.60 1.88 46.84 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 24 C 0.08 2.48 4.04 86.37 0.35 2.83 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.42 3.27 7.94 -92.71 -0.74 2.53 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 0.95 7.64 -2.39 -0.02 0.93 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 2.29 6.22 -2.38 -0.01 2.28 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.01 0.57 8.12 -2.38 -0.02 0.55 16 42 H 0.06 2.51 7.98 -2.39 -0.02 2.49 16 43 H 0.03 1.24 7.20 -2.39 -0.02 1.23 16 44 H 0.02 1.06 5.86 -2.39 -0.01 1.05 16 45 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 46 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 47 H 0.02 0.64 8.08 -2.39 -0.02 0.63 16 Total: -1.00 -76.01 366.91 0.10 -75.90 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.12 Total: 9.09 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.55 Total: -14.93 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -6.40 Total: -96.90 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.05 Total: -20.00 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -76.01 0.10 -75.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051060939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.187 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds