Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46733 * 2 1 4 4 C 1.53002 * 109.46733 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47194 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99733 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00342 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99503 * 180.02562 * 6 5 4 9 9 C 1.53125 * 109.52288 * 179.97438 * 8 6 5 10 10 C 1.53033 * 109.28287 * 177.55486 * 9 8 6 11 11 N 1.46851 * 109.52231 * 300.82460 * 10 9 8 12 12 C 1.46898 * 110.99682 * 185.83477 * 11 10 9 13 13 C 1.53006 * 109.47006 * 170.00115 * 12 11 10 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00192 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47309 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47510 * 119.99847 * 18 16 14 21 21 H 1.48506 * 109.47246 * 239.99882 * 18 16 14 22 22 C 1.46846 * 111.19864 * 61.73920 * 11 10 9 23 23 C 1.53033 * 109.52460 * 298.25500 * 22 11 10 24 24 H 1.09001 * 109.47285 * 300.00038 * 1 2 3 25 25 H 1.08999 * 109.47408 * 59.99864 * 1 2 3 26 26 H 1.08996 * 109.47396 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46488 * 240.00377 * 2 1 3 28 28 H 1.08997 * 109.46706 * 119.99907 * 2 1 3 29 29 H 1.08992 * 109.47557 * 60.00478 * 3 2 1 30 30 H 1.08997 * 109.47449 * 299.99452 * 3 2 1 31 31 H 1.09001 * 109.47285 * 59.99962 * 4 3 2 32 32 H 1.08999 * 109.47408 * 300.00136 * 4 3 2 33 33 H 0.96998 * 120.00088 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.52745 * 59.87307 * 8 6 5 35 35 H 1.09005 * 109.50073 * 57.61461 * 9 8 6 36 36 H 1.08991 * 109.50379 * 297.49976 * 9 8 6 37 37 H 1.08989 * 109.46624 * 180.80484 * 10 9 8 38 38 H 1.09002 * 109.45127 * 60.82884 * 10 9 8 39 39 H 1.09001 * 109.47392 * 50.00413 * 12 11 10 40 40 H 1.09001 * 109.47520 * 290.00136 * 12 11 10 41 41 H 1.09001 * 109.47002 * 299.99782 * 13 12 11 42 42 H 1.08993 * 109.46955 * 60.00219 * 13 12 11 43 43 H 0.96996 * 120.00505 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.46555 * 58.27646 * 22 11 10 45 45 H 1.09001 * 109.46296 * 178.24247 * 22 11 10 46 46 H 1.08997 * 109.50475 * 299.23909 * 23 22 11 47 47 H 1.09002 * 109.50799 * 179.12007 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3834 3.0699 -0.0001 7 8 6.1715 2.1481 -0.0001 8 6 5.8857 4.4908 -0.0001 9 6 7.4170 4.4922 0.0004 10 6 7.9210 5.9358 -0.0613 11 7 7.4134 6.5812 -1.2788 12 6 7.9886 7.9231 -1.4421 13 6 7.6389 8.4622 -2.8307 14 6 8.2294 9.8385 -2.9985 15 1 8.7970 10.2843 -2.1950 16 6 8.0442 10.5291 -4.1774 17 7 7.3527 9.9865 -5.1557 18 14 8.7756 12.2353 -4.3852 19 1 9.5025 12.6164 -3.1475 20 1 9.7181 12.2336 -5.5327 21 1 7.6871 13.2128 -4.6402 22 6 5.9459 6.6340 -1.2795 23 6 5.3830 5.2112 -1.2543 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 3.4280 3.5610 -0.0003 34 1 5.5211 5.0062 0.8884 35 1 7.7816 3.9421 -0.8671 36 1 7.7810 4.0183 0.9119 37 1 9.0108 5.9397 -0.0755 38 1 7.5672 6.4815 0.8135 39 1 9.0720 7.8695 -1.3355 40 1 7.5810 8.5883 -0.6809 41 1 8.0465 7.7971 -3.5920 42 1 6.5555 8.5159 -2.9373 43 1 7.2221 10.4725 -5.9849 44 1 5.6015 7.1766 -0.3991 45 1 5.6013 7.1450 -2.1785 46 1 5.7156 4.6725 -2.1415 47 1 4.2938 5.2510 -1.2390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051182730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -71.740601 kcal Electronic energy + Delta-G solvation = -22106.826358 eV Core-core repulsion = 18901.881337 eV Total energy + Delta-G solvation = -3204.945021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21256 -38.18777 -36.45300 -34.21872 -33.89450 -32.53793 -30.70544 -29.59800 -28.88170 -25.69240 -24.01342 -22.96904 -22.91241 -21.71154 -20.73730 -19.95779 -19.43235 -17.19632 -16.48676 -16.25067 -16.10275 -15.28635 -14.78395 -14.68198 -14.46461 -14.21024 -14.00318 -13.87542 -13.51471 -13.14654 -12.95060 -12.72233 -12.60433 -12.21087 -11.89762 -11.76807 -11.55366 -11.54587 -11.25102 -11.15198 -11.05660 -10.98531 -10.88931 -10.60387 -10.49161 -10.34665 -9.79697 -9.68937 -9.30273 -9.22510 -9.09250 -8.32624 -7.69152 -5.99227 -4.01382 2.60759 3.03912 3.31318 3.38848 3.42769 4.36392 4.41378 4.50710 4.52624 4.57717 4.69449 4.85244 4.92431 4.97962 5.12796 5.22375 5.32360 5.36719 5.36859 5.42548 5.46783 5.59121 5.59509 5.68362 5.71474 5.78166 5.82334 5.85608 5.88900 5.96807 6.16473 6.23959 6.25943 6.30852 6.38509 6.51800 6.57476 6.98484 7.35105 7.52803 7.60514 7.81849 7.91243 8.09601 8.15238 8.44518 9.06176 9.62246 11.12156 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.002608 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.570500 B =10735.289811 C =11497.401918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.118 3.882 5 N -0.735 5.735 6 C 0.520 3.480 7 O -0.540 6.540 8 C -0.107 4.107 9 C -0.093 4.093 10 C 0.055 3.945 11 N -0.539 5.539 12 C 0.063 3.937 13 C 0.027 3.973 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.056 3.944 23 C -0.105 4.105 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.025 0.975 42 H 0.017 0.983 43 H 0.260 0.740 44 H 0.027 0.973 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.305 -16.612 12.468 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.170 4.170 4 C -0.006 4.006 5 N -0.388 5.388 6 C 0.307 3.693 7 O -0.416 6.416 8 C -0.128 4.128 9 C -0.132 4.132 10 C -0.074 4.074 11 N -0.264 5.264 12 C -0.063 4.063 13 C -0.010 4.010 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.072 4.072 23 C -0.143 4.143 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.636 -17.543 11.899 24.181 hybrid contribution -0.270 1.825 0.506 1.913 sum -11.906 -15.718 12.404 23.296 Atomic orbital electron populations 1.21768 0.95494 1.01797 1.01948 1.21435 0.96114 0.95928 1.02525 1.21839 0.94211 0.98089 1.02893 1.21352 0.93631 0.83308 1.02319 1.46067 1.07447 1.08710 1.76548 1.20826 0.81801 0.91754 0.74892 1.90683 1.55334 1.46593 1.49023 1.21439 0.98609 0.92038 1.00747 1.21398 0.91975 0.96689 1.03106 1.22083 1.00101 0.93892 0.91298 1.62013 1.06185 1.22429 1.35761 1.22324 0.98278 0.85332 1.00396 1.19111 0.96824 0.95055 0.90028 1.21240 1.33491 1.01243 1.00001 0.92754 1.24996 0.95359 0.98047 0.95980 1.69977 1.40420 1.37731 1.05106 0.86547 0.78944 0.84471 0.78080 1.19789 1.20996 1.21074 1.22076 0.88516 0.94898 1.01686 1.21600 0.99227 0.96694 0.96762 0.92697 0.92592 0.92608 0.91598 0.91716 0.91308 0.91107 0.91554 0.91710 0.76520 0.89070 0.90302 0.91473 0.90686 0.95646 0.92029 0.96275 0.95677 0.96504 0.93072 0.95494 0.89086 0.90468 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.68 5.93 -26.73 -0.16 -0.84 16 3 C -0.13 -0.79 5.33 -26.73 -0.14 -0.93 16 4 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 5 N -0.74 -6.92 5.46 -60.29 -0.33 -7.25 16 6 C 0.52 6.63 7.15 -10.98 -0.08 6.55 16 7 O -0.54 -8.90 15.98 5.56 0.09 -8.81 16 8 C -0.11 -1.30 2.59 -91.64 -0.24 -1.54 16 9 C -0.09 -1.30 4.68 -26.65 -0.12 -1.42 16 10 C 0.05 0.82 5.46 -3.83 -0.02 0.80 16 11 N -0.54 -9.76 4.66 -234.67 -1.09 -10.85 16 12 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 13 C 0.03 0.70 4.90 -27.88 -0.14 0.57 16 14 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.06 0.90 5.29 -3.84 -0.02 0.88 16 23 C -0.10 -1.34 5.26 -26.65 -0.14 -1.48 16 24 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 2.80 7.96 -40.82 -0.33 2.48 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.11 8.01 -51.94 -0.42 0.70 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.29 7.99 -51.93 -0.41 0.88 16 40 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 41 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 43 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 1.66 6.21 -51.93 -0.32 1.34 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -32.33 370.51 -10.11 -42.44 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.93 Total: -2.64 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.14 Total: -9.02 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.69 Total: -44.18 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.33 -10.11 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051182730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.302 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds