Wall clock time and date at job start Tue Mar 31 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.53001 * 109.47407 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47489 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00141 * 179.97438 * 5 4 3 7 7 O 1.21290 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00164 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.50180 * 60.08000 * 8 6 5 10 10 C 1.53112 * 109.50296 * 300.00050 * 8 6 5 11 11 C 1.53116 * 109.16015 * 297.71453 * 10 8 6 12 12 C 1.53043 * 109.27907 * 302.34463 * 11 10 8 13 13 H 1.09007 * 109.45743 * 299.17597 * 12 11 10 14 14 C 1.52996 * 109.46640 * 179.19790 * 12 11 10 15 15 N 1.46847 * 109.52032 * 59.17824 * 12 11 10 16 16 C 1.46899 * 110.99786 * 174.16420 * 15 12 11 17 17 C 1.50701 * 109.47307 * 64.53564 * 16 15 12 18 18 H 1.08000 * 119.99730 * 354.94197 * 17 16 15 19 19 C 1.37879 * 119.99888 * 174.94611 * 17 16 15 20 20 N 1.31512 * 120.00210 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47052 * 89.99757 * 21 19 17 23 23 H 1.48495 * 109.47178 * 209.99853 * 21 19 17 24 24 H 1.48500 * 109.47131 * 329.99828 * 21 19 17 25 25 C 1.46847 * 111.20001 * 298.25777 * 15 12 11 26 26 H 1.09008 * 109.47139 * 59.99983 * 1 2 3 27 27 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47602 * 300.00161 * 1 2 3 29 29 H 1.08999 * 109.47602 * 239.99839 * 2 1 3 30 30 H 1.08997 * 109.47461 * 119.99707 * 2 1 3 31 31 H 1.09003 * 109.47521 * 59.99573 * 3 2 1 32 32 H 1.09006 * 109.47162 * 299.99465 * 3 2 1 33 33 H 1.09003 * 109.47092 * 59.99355 * 4 3 2 34 34 H 1.08999 * 109.47058 * 300.00298 * 4 3 2 35 35 H 0.96998 * 119.99984 * 0.02562 * 5 4 3 36 36 H 1.08994 * 109.52782 * 177.80609 * 10 8 6 37 37 H 1.09005 * 109.52365 * 57.61620 * 10 8 6 38 38 H 1.09008 * 109.50569 * 182.40844 * 11 10 8 39 39 H 1.08999 * 109.51010 * 62.28723 * 11 10 8 40 40 H 1.08999 * 109.47262 * 53.44295 * 14 12 11 41 41 H 1.09004 * 109.47300 * 293.44711 * 14 12 11 42 42 H 1.08998 * 109.47562 * 173.44172 * 14 12 11 43 43 H 1.08998 * 109.46932 * 184.53865 * 16 15 12 44 44 H 1.09001 * 109.47083 * 304.53706 * 16 15 12 45 45 H 0.97001 * 119.99811 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.46309 * 301.72890 * 25 15 12 47 47 H 1.08993 * 109.45285 * 181.75031 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3833 3.0701 0.0010 7 8 6.1715 2.1482 0.0028 8 6 5.8857 4.4909 0.0009 9 1 5.5231 5.0051 0.8910 10 6 5.3767 5.2130 -1.2496 11 6 5.9384 4.5198 -2.4939 12 6 7.4673 4.5198 -2.4254 13 1 7.8297 5.5476 -2.4000 14 6 8.0329 3.8102 -3.6573 15 7 7.9042 3.8170 -1.2123 16 6 9.3661 3.6764 -1.1830 17 6 10.0003 5.0406 -1.0935 18 1 9.3847 5.9265 -1.1439 19 6 11.3663 5.1575 -0.9473 20 7 12.1158 4.0786 -0.8855 21 14 12.1525 6.8485 -0.8371 22 1 12.2137 7.2742 0.5842 23 1 13.5268 6.7929 -1.3968 24 1 11.3418 7.8226 -1.6111 25 6 7.4161 4.4918 -0.0028 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9289 0.8908 35 1 3.4280 3.5610 -0.0003 36 1 5.7073 6.2514 -1.2306 37 1 4.2875 5.1770 -1.2731 38 1 5.6142 5.0551 -3.3864 39 1 5.5760 3.4926 -2.5332 40 1 7.6168 4.2601 -4.5587 41 1 7.7666 2.7538 -3.6223 42 1 9.1181 3.9112 -3.6685 43 1 9.6567 3.0830 -0.3161 44 1 9.7016 3.1788 -2.0929 45 1 13.0769 4.1610 -0.7831 46 1 7.7787 5.5195 0.0111 47 1 7.7817 3.9657 0.8790 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069173378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:45 Heat of formation + Delta-G solvation = -80.784810 kcal Electronic energy + Delta-G solvation = -23444.779995 eV Core-core repulsion = 20239.442788 eV Total energy + Delta-G solvation = -3205.337207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29694 -39.21703 -36.97731 -35.53432 -34.56515 -33.78696 -33.07786 -29.86046 -28.86236 -27.89966 -25.63472 -24.67947 -23.30277 -22.84921 -22.16208 -21.23271 -20.10111 -18.37262 -17.39729 -17.26401 -16.80691 -16.68377 -16.16741 -16.00524 -15.40221 -15.20895 -14.85460 -14.68278 -14.43485 -14.34327 -13.82378 -13.69163 -13.29063 -13.13060 -13.07634 -12.83549 -12.77091 -12.68799 -12.41391 -12.37446 -12.31509 -12.14849 -11.99434 -11.93672 -11.78216 -11.59597 -11.46691 -11.24931 -10.87820 -10.57316 -10.45691 -9.90268 -8.80633 -8.08430 -6.32985 1.35678 1.36921 1.47464 1.94698 2.37327 2.37652 3.11388 3.40652 3.82430 3.94463 3.95488 3.98842 4.07109 4.16186 4.23183 4.43356 4.48473 4.51299 4.61471 4.69651 4.74572 4.77162 4.82507 4.91642 4.95991 4.96569 4.99854 5.07110 5.08753 5.13642 5.19357 5.24416 5.30011 5.30800 5.40053 5.41118 5.43292 5.49099 5.53304 5.66892 5.79833 6.10511 6.37008 6.77027 6.79464 6.91838 7.38863 7.58060 8.90435 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.003592 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.289311 B = 7793.122471 C = 7899.267339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.117 4.117 4 C 0.121 3.879 5 N -0.723 5.723 6 C 0.519 3.481 7 O -0.562 6.562 8 C -0.101 4.101 9 H 0.125 0.875 10 C -0.101 4.101 11 C -0.106 4.106 12 C 0.081 3.919 13 H 0.025 0.975 14 C -0.133 4.133 15 N -0.525 5.525 16 C 0.205 3.795 17 C -0.548 4.548 18 H 0.060 0.940 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.263 1.263 25 C 0.086 3.914 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.413 0.587 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.031 0.969 43 H -0.015 1.015 44 H 0.007 0.993 45 H 0.263 0.737 46 H 0.033 0.967 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.360 0.887 0.164 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.003 4.003 5 N -0.378 5.378 6 C 0.306 3.694 7 O -0.438 6.438 8 C -0.123 4.123 9 H 0.143 0.857 10 C -0.139 4.139 11 C -0.144 4.144 12 C -0.027 4.027 13 H 0.043 0.957 14 C -0.190 4.190 15 N -0.249 5.249 16 C 0.078 3.922 17 C -0.587 4.587 18 H 0.078 0.922 19 C -0.193 4.193 20 N -0.571 5.571 21 Si 0.785 3.215 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.043 4.043 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.250 0.750 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.003 0.997 44 H 0.025 0.975 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.830 -0.335 0.163 24.833 hybrid contribution 1.613 1.289 0.261 2.081 sum -23.217 0.953 0.424 23.240 Atomic orbital electron populations 1.21741 0.94518 1.02070 1.02304 1.21456 0.96846 0.95880 1.02137 1.21738 0.91587 0.98325 1.03788 1.21292 0.95464 0.83008 1.00542 1.45870 1.06391 1.09128 1.76398 1.20743 0.82256 0.91507 0.74915 1.90749 1.56567 1.47492 1.49010 1.21527 0.95210 0.93162 1.02384 0.85733 1.21586 1.01679 0.99195 0.91406 1.21647 0.92963 1.00632 0.99154 1.21540 0.95659 0.95091 0.90452 0.95729 1.21724 0.99989 0.99964 0.97347 1.62336 1.11792 1.49339 1.01455 1.19325 0.83789 0.94581 0.94516 1.21978 0.92806 0.93933 1.50025 0.92213 1.25910 0.98101 1.00537 0.94713 1.70111 1.05659 1.30385 1.50987 0.85516 0.77690 0.79738 0.78506 1.19922 1.20840 1.18740 1.21564 0.93322 0.96281 0.93143 0.92223 0.92470 0.92176 0.92250 0.92159 0.90081 0.90126 0.93761 0.93547 0.74969 0.90204 0.87788 0.89301 0.93005 0.90484 0.93833 0.94954 0.99688 0.97541 0.92777 0.94900 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.59 5.93 30.59 0.18 -1.41 16 3 C -0.12 -1.47 5.33 30.59 0.16 -1.30 16 4 C 0.12 2.53 5.67 86.38 0.49 3.02 16 5 N -0.72 -15.44 5.44 -463.05 -2.52 -17.96 16 6 C 0.52 16.44 5.87 87.66 0.51 16.96 16 7 O -0.56 -24.80 15.24 -3.06 -0.05 -24.84 16 8 C -0.10 -2.91 3.02 -11.49 -0.03 -2.94 16 9 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 10 C -0.10 -2.28 5.43 30.67 0.17 -2.12 16 11 C -0.11 -3.04 5.12 30.65 0.16 -2.88 16 12 C 0.08 3.22 2.09 44.94 0.09 3.31 16 13 H 0.02 1.06 6.84 -2.38 -0.02 1.04 16 14 C -0.13 -5.25 8.54 71.98 0.61 -4.64 16 15 N -0.53 -24.74 3.56 -875.65 -3.11 -27.85 16 16 C 0.20 11.81 4.72 85.56 0.40 12.21 16 17 C -0.55 -31.70 7.72 25.60 0.20 -31.50 16 18 H 0.06 3.33 5.86 -2.91 -0.02 3.31 16 19 C 0.01 0.35 5.46 84.66 0.46 0.81 16 20 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 21 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.09 3.59 4.03 86.33 0.35 3.94 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.41 5.50 7.87 -92.71 -0.73 4.77 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 1.47 7.51 -2.38 -0.02 1.46 16 38 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 1.62 7.35 -2.39 -0.02 1.60 16 40 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.03 1.48 6.63 -2.39 -0.02 1.46 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.01 0.40 6.09 -2.39 -0.01 0.39 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.03 1.41 6.75 -2.39 -0.02 1.40 16 47 H 0.04 1.73 8.06 -2.39 -0.02 1.71 16 Total: -1.00 -77.00 360.60 1.30 -75.70 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.20 Total: 13.29 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 4.47 Total: -7.29 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -5.35 Total: -104.02 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -77.00 1.30 -75.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069173378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.081 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds