Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47064 * 2 1 4 4 C 1.52993 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46802 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99983 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99968 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00403 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.50096 * 299.91682 * 8 6 5 10 10 C 1.53125 * 109.50262 * 59.99245 * 8 6 5 11 11 C 1.53122 * 109.15954 * 177.63775 * 10 8 6 12 12 C 1.53038 * 109.27960 * 302.34843 * 11 10 8 13 13 H 1.08997 * 109.46343 * 299.16494 * 12 11 10 14 14 C 1.53000 * 109.45538 * 179.19038 * 12 11 10 15 15 N 1.46849 * 109.52289 * 59.17960 * 12 11 10 16 16 C 1.46899 * 111.00086 * 174.16414 * 15 12 11 17 17 C 1.50697 * 109.47374 * 64.49903 * 16 15 12 18 18 H 1.07998 * 119.99958 * 354.79839 * 17 16 15 19 19 C 1.37878 * 119.99911 * 174.80381 * 17 16 15 20 20 N 1.31515 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46935 * 269.99997 * 21 19 17 23 23 H 1.48501 * 109.46965 * 29.99937 * 21 19 17 24 24 H 1.48495 * 109.46997 * 149.99981 * 21 19 17 25 25 C 1.46850 * 111.19810 * 298.25451 * 15 12 11 26 26 H 1.09003 * 109.47431 * 60.00082 * 1 2 3 27 27 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47155 * 299.99654 * 1 2 3 29 29 H 1.08997 * 109.47169 * 239.99801 * 2 1 3 30 30 H 1.08998 * 109.46988 * 120.00087 * 2 1 3 31 31 H 1.08997 * 109.47289 * 59.99875 * 3 2 1 32 32 H 1.09003 * 109.46930 * 300.00225 * 3 2 1 33 33 H 1.08999 * 109.47279 * 60.00313 * 4 3 2 34 34 H 1.08996 * 109.47356 * 299.99169 * 4 3 2 35 35 H 0.96996 * 120.00376 * 359.97438 * 5 4 3 36 36 H 1.09004 * 109.51793 * 57.73871 * 10 8 6 37 37 H 1.08996 * 109.57661 * 297.57094 * 10 8 6 38 38 H 1.08995 * 109.50582 * 182.40680 * 11 10 8 39 39 H 1.09001 * 109.53202 * 62.30642 * 11 10 8 40 40 H 1.09008 * 109.47073 * 293.16393 * 14 12 11 41 41 H 1.08991 * 109.46916 * 53.16246 * 14 12 11 42 42 H 1.08994 * 109.47368 * 173.16929 * 14 12 11 43 43 H 1.09006 * 109.47150 * 304.49805 * 16 15 12 44 44 H 1.09001 * 109.47477 * 184.50548 * 16 15 12 45 45 H 0.96996 * 119.99617 * 0.02562 * 20 19 17 46 46 H 1.08996 * 109.46319 * 181.75716 * 25 15 12 47 47 H 1.08989 * 109.46413 * 301.73226 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 5.3833 3.0701 -0.0010 7 8 6.1715 2.1482 -0.0018 8 6 5.8857 4.4908 0.0003 9 1 5.5230 5.0058 -0.8894 10 6 5.3767 5.2120 1.2515 11 6 5.9395 6.6358 1.2749 12 6 7.4684 6.5754 1.2411 13 1 7.8301 6.0385 2.1180 14 6 8.0347 7.9967 1.2439 15 7 7.9051 5.8771 0.0253 16 6 9.3671 5.9210 -0.1106 17 6 10.0004 5.1606 1.0259 18 1 9.3846 4.7634 1.8192 19 6 11.3660 4.9721 1.0530 20 7 12.1159 5.4563 0.0872 21 14 12.1511 4.0300 2.4622 22 1 12.5098 4.9750 3.5501 23 1 11.1912 3.0216 2.9789 24 1 13.3761 3.3448 1.9777 25 6 7.4160 4.4926 0.0034 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8909 34 1 3.9336 0.9286 0.8891 35 1 3.4279 3.5610 0.0003 36 1 5.7068 4.6751 2.1409 37 1 4.2876 5.2511 1.2328 38 1 5.6154 7.1404 2.1850 39 1 5.5777 7.1850 0.4057 40 1 7.7733 8.4939 0.3098 41 1 7.6149 8.5533 2.0817 42 1 9.1194 7.9554 1.3422 43 1 9.7033 6.9576 -0.0861 44 1 9.6578 5.4672 -1.0581 45 1 11.7083 5.9464 -0.6439 46 1 7.7816 3.9924 -0.8934 47 1 7.7779 3.9656 0.8861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069173380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = -69.820681 kcal Electronic energy + Delta-G solvation = -23012.193808 eV Core-core repulsion = 19807.332041 eV Total energy + Delta-G solvation = -3204.861767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01777 -38.16257 -36.31640 -34.12770 -33.64151 -32.26937 -31.46916 -29.19868 -27.10095 -26.11059 -24.01782 -23.44374 -21.93910 -21.65075 -21.55172 -19.77678 -19.10922 -17.01445 -16.41800 -16.15967 -16.00882 -15.12353 -14.61087 -14.48301 -14.02812 -13.97326 -13.84854 -13.67442 -13.56333 -13.03375 -12.76802 -12.48371 -12.19863 -12.11153 -11.75558 -11.53989 -11.47033 -11.43766 -11.29101 -11.02477 -10.98710 -10.86093 -10.67953 -10.51804 -10.25508 -10.11360 -10.03928 -9.62373 -9.37152 -9.09720 -9.04115 -8.30505 -7.08015 -6.32095 -4.05010 2.84592 3.20182 3.44668 3.50043 3.65055 4.50306 4.56769 4.57690 4.65060 4.80346 4.95958 5.03033 5.07032 5.19716 5.22844 5.30564 5.40968 5.42612 5.50283 5.54055 5.56484 5.67215 5.77875 5.79324 5.89940 5.92933 5.96476 6.02875 6.10015 6.16692 6.21345 6.38116 6.43976 6.48262 6.57695 6.84741 6.89236 6.95260 7.13825 7.32077 7.53969 7.93088 8.19227 8.22039 8.39869 8.56967 8.86824 9.67422 11.05233 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.003723 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.018921 B = 7519.229185 C = 8385.735960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.737 5.737 6 C 0.518 3.482 7 O -0.532 6.532 8 C -0.104 4.104 9 H 0.098 0.902 10 C -0.106 4.106 11 C -0.110 4.110 12 C 0.085 3.915 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.533 5.533 16 C 0.174 3.826 17 C -0.624 4.624 18 H 0.050 0.950 19 C 0.022 3.978 20 N -0.911 5.911 21 Si 1.065 2.935 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.088 3.912 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.021 0.979 45 H 0.269 0.731 46 H 0.069 0.931 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.833 -3.300 0.802 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.006 4.006 5 N -0.391 5.391 6 C 0.304 3.696 7 O -0.407 6.407 8 C -0.126 4.126 9 H 0.116 0.884 10 C -0.144 4.144 11 C -0.148 4.148 12 C -0.024 4.024 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.257 5.257 16 C 0.048 3.952 17 C -0.663 4.663 18 H 0.068 0.932 19 C -0.183 4.183 20 N -0.547 5.547 21 Si 0.894 3.106 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.041 4.041 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.039 0.961 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.984 -4.277 0.983 21.438 hybrid contribution -1.439 0.360 0.115 1.488 sum -22.424 -3.917 1.098 22.790 Atomic orbital electron populations 1.21766 0.95579 1.01750 1.01845 1.21440 0.96002 0.96029 1.02600 1.21823 0.94374 0.97974 1.02700 1.21329 0.93402 0.83550 1.02350 1.46057 1.07401 1.08419 1.77203 1.20887 0.81696 0.91940 0.75052 1.90725 1.55196 1.46581 1.48172 1.21426 0.99431 0.91315 1.00442 0.88390 1.21520 0.99110 0.96899 0.96857 1.21656 0.96343 0.95326 1.01425 1.21399 0.92563 0.95166 0.93291 0.93718 1.21791 1.02173 0.95399 1.00294 1.62401 1.14546 1.13330 1.35466 1.19882 0.81909 0.96854 0.96550 1.22537 0.95105 1.38899 1.09714 0.93187 1.25709 0.94312 0.96960 1.01291 1.70763 1.38710 1.34438 1.10791 0.83597 0.75803 0.76181 0.75031 1.21538 1.21552 1.20947 1.21547 0.89234 0.90827 1.02463 0.92699 0.92633 0.92707 0.91629 0.91631 0.91327 0.91326 0.91677 0.91702 0.76784 0.91909 0.92275 0.92049 0.91519 0.92919 0.93693 0.91457 0.95466 0.96144 0.92039 0.91233 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.13 -0.92 5.33 -26.74 -0.14 -1.06 16 4 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 5 N -0.74 -8.39 5.46 -60.30 -0.33 -8.72 16 6 C 0.52 8.27 7.16 -10.99 -0.08 8.19 16 7 O -0.53 -10.98 15.99 5.55 0.09 -10.89 16 8 C -0.10 -1.65 2.69 -91.69 -0.25 -1.89 16 9 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 10 C -0.11 -1.45 5.16 -26.60 -0.14 -1.58 16 11 C -0.11 -1.59 5.37 -26.65 -0.14 -1.73 16 12 C 0.08 1.62 2.09 -67.72 -0.14 1.48 16 13 H 0.04 0.98 6.84 -51.93 -0.36 0.62 16 14 C -0.14 -2.51 8.53 37.16 0.32 -2.19 16 15 N -0.53 -11.52 4.69 -228.13 -1.07 -12.59 16 16 C 0.17 4.49 4.07 -4.98 -0.02 4.47 16 17 C -0.62 -17.66 7.72 -34.44 -0.27 -17.93 16 18 H 0.05 1.44 5.86 -52.49 -0.31 1.14 16 19 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 20 N -0.91 -27.99 13.65 55.43 0.76 -27.24 16 21 Si 1.07 26.18 29.90 -169.99 -5.08 21.09 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.09 1.86 3.61 -3.83 -0.01 1.85 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.40 3.35 7.94 -40.82 -0.32 3.02 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.41 6.64 -51.93 -0.35 1.06 16 43 H 0.03 0.72 6.10 -51.93 -0.32 0.41 16 44 H 0.02 0.57 7.80 -51.93 -0.41 0.17 16 45 H 0.27 8.21 7.18 -40.82 -0.29 7.92 16 46 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 47 H 0.05 1.18 6.69 -51.94 -0.35 0.83 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -32.87 362.66 -9.61 -42.48 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.65 Total: 0.52 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.78 Total: -10.12 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.64 Total: -48.55 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.87 -9.61 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069173380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.342 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds