Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47064 * 2 1 4 4 C 1.52993 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46802 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99983 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99968 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00403 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.50096 * 299.91682 * 8 6 5 10 10 C 1.53125 * 109.50262 * 59.99245 * 8 6 5 11 11 C 1.53122 * 109.15954 * 177.63775 * 10 8 6 12 12 C 1.53038 * 109.27960 * 302.34843 * 11 10 8 13 13 H 1.08997 * 109.46343 * 299.16494 * 12 11 10 14 14 C 1.53000 * 109.45538 * 179.19038 * 12 11 10 15 15 N 1.46849 * 109.52289 * 59.17960 * 12 11 10 16 16 C 1.46899 * 111.00086 * 174.16414 * 15 12 11 17 17 C 1.50697 * 109.47374 * 64.49903 * 16 15 12 18 18 H 1.07998 * 119.99958 * 354.79839 * 17 16 15 19 19 C 1.37878 * 119.99911 * 174.80381 * 17 16 15 20 20 N 1.31515 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46935 * 269.99997 * 21 19 17 23 23 H 1.48501 * 109.46965 * 29.99937 * 21 19 17 24 24 H 1.48495 * 109.46997 * 149.99981 * 21 19 17 25 25 C 1.46850 * 111.19810 * 298.25451 * 15 12 11 26 26 H 1.09003 * 109.47431 * 60.00082 * 1 2 3 27 27 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47155 * 299.99654 * 1 2 3 29 29 H 1.08997 * 109.47169 * 239.99801 * 2 1 3 30 30 H 1.08998 * 109.46988 * 120.00087 * 2 1 3 31 31 H 1.08997 * 109.47289 * 59.99875 * 3 2 1 32 32 H 1.09003 * 109.46930 * 300.00225 * 3 2 1 33 33 H 1.08999 * 109.47279 * 60.00313 * 4 3 2 34 34 H 1.08996 * 109.47356 * 299.99169 * 4 3 2 35 35 H 0.96996 * 120.00376 * 359.97438 * 5 4 3 36 36 H 1.09004 * 109.51793 * 57.73871 * 10 8 6 37 37 H 1.08996 * 109.57661 * 297.57094 * 10 8 6 38 38 H 1.08995 * 109.50582 * 182.40680 * 11 10 8 39 39 H 1.09001 * 109.53202 * 62.30642 * 11 10 8 40 40 H 1.09008 * 109.47073 * 293.16393 * 14 12 11 41 41 H 1.08991 * 109.46916 * 53.16246 * 14 12 11 42 42 H 1.08994 * 109.47368 * 173.16929 * 14 12 11 43 43 H 1.09006 * 109.47150 * 304.49805 * 16 15 12 44 44 H 1.09001 * 109.47477 * 184.50548 * 16 15 12 45 45 H 0.96996 * 119.99617 * 0.02562 * 20 19 17 46 46 H 1.08996 * 109.46319 * 181.75716 * 25 15 12 47 47 H 1.08989 * 109.46413 * 301.73226 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 5.3833 3.0701 -0.0010 7 8 6.1715 2.1482 -0.0018 8 6 5.8857 4.4908 0.0003 9 1 5.5230 5.0058 -0.8894 10 6 5.3767 5.2120 1.2515 11 6 5.9395 6.6358 1.2749 12 6 7.4684 6.5754 1.2411 13 1 7.8301 6.0385 2.1180 14 6 8.0347 7.9967 1.2439 15 7 7.9051 5.8771 0.0253 16 6 9.3671 5.9210 -0.1106 17 6 10.0004 5.1606 1.0259 18 1 9.3846 4.7634 1.8192 19 6 11.3660 4.9721 1.0530 20 7 12.1159 5.4563 0.0872 21 14 12.1511 4.0300 2.4622 22 1 12.5098 4.9750 3.5501 23 1 11.1912 3.0216 2.9789 24 1 13.3761 3.3448 1.9777 25 6 7.4160 4.4926 0.0034 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8909 34 1 3.9336 0.9286 0.8891 35 1 3.4279 3.5610 0.0003 36 1 5.7068 4.6751 2.1409 37 1 4.2876 5.2511 1.2328 38 1 5.6154 7.1404 2.1850 39 1 5.5777 7.1850 0.4057 40 1 7.7733 8.4939 0.3098 41 1 7.6149 8.5533 2.0817 42 1 9.1194 7.9554 1.3422 43 1 9.7033 6.9576 -0.0861 44 1 9.6578 5.4672 -1.0581 45 1 11.7083 5.9464 -0.6439 46 1 7.7816 3.9924 -0.8934 47 1 7.7779 3.9656 0.8861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069173380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = -93.021811 kcal Electronic energy + Delta-G solvation = -23013.199885 eV Core-core repulsion = 19807.332041 eV Total energy + Delta-G solvation = -3205.867844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36186 -39.66545 -37.16991 -35.86343 -34.74667 -33.87845 -33.15398 -30.01549 -28.65434 -27.87370 -25.70803 -24.65045 -23.47458 -22.94391 -22.24964 -21.11628 -20.65020 -18.75939 -18.03552 -17.28855 -16.92925 -16.38367 -16.17716 -15.90214 -15.70351 -15.50274 -15.07700 -14.91389 -14.49504 -14.29130 -14.17949 -13.90514 -13.48072 -13.27459 -13.01907 -12.97509 -12.85663 -12.71073 -12.46979 -12.41704 -12.13858 -12.05902 -12.02985 -11.95051 -11.77591 -11.61224 -11.50735 -11.27172 -11.06572 -10.73537 -10.56795 -10.13463 -9.05459 -8.65030 -6.42506 1.42368 1.51970 1.57684 1.69426 2.11906 2.48332 3.10347 3.23287 3.62434 3.78968 3.87015 3.94911 4.01717 4.11560 4.17314 4.23829 4.42504 4.43390 4.52319 4.63328 4.64228 4.70244 4.73154 4.78016 4.91803 4.92419 4.94453 4.99784 5.01685 5.03604 5.05508 5.10203 5.18107 5.25729 5.26378 5.35825 5.35954 5.42793 5.47647 5.49343 5.83660 5.95396 6.38585 6.46376 6.49554 6.53567 7.23777 7.37803 8.67705 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.003723 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.018921 B = 7519.229185 C = 8385.735960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.115 3.885 5 N -0.711 5.711 6 C 0.517 3.483 7 O -0.590 6.590 8 C -0.093 4.093 9 H 0.124 0.876 10 C -0.101 4.101 11 C -0.100 4.100 12 C 0.076 3.924 13 H 0.010 0.990 14 C -0.133 4.133 15 N -0.525 5.525 16 C 0.183 3.817 17 C -0.625 4.625 18 H 0.039 0.961 19 C -0.030 4.030 20 N -0.933 5.933 21 Si 1.110 2.890 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.279 1.279 25 C 0.095 3.905 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.418 0.582 36 H 0.045 0.955 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.026 0.974 43 H 0.020 0.980 44 H -0.011 1.011 45 H 0.257 0.743 46 H 0.036 0.964 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.467 -2.331 1.850 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.008 4.008 5 N -0.365 5.365 6 C 0.304 3.696 7 O -0.470 6.470 8 C -0.115 4.115 9 H 0.142 0.858 10 C -0.138 4.138 11 C -0.137 4.137 12 C -0.032 4.032 13 H 0.028 0.972 14 C -0.190 4.190 15 N -0.248 5.248 16 C 0.056 3.944 17 C -0.663 4.663 18 H 0.057 0.943 19 C -0.229 4.229 20 N -0.570 5.570 21 Si 0.932 3.068 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.205 1.205 25 C -0.034 4.034 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.256 0.744 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.007 0.993 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -24.702 -3.268 2.030 25.000 hybrid contribution -0.359 0.047 -0.243 0.436 sum -25.061 -3.221 1.787 25.330 Atomic orbital electron populations 1.21745 0.94528 1.02115 1.02325 1.21456 0.96857 0.95721 1.02260 1.21756 0.91268 0.98550 1.04011 1.21437 0.95841 0.82465 1.01097 1.45832 1.05990 1.09813 1.74815 1.20916 0.82826 0.91274 0.74600 1.90712 1.57026 1.48034 1.51239 1.21308 0.94929 0.92161 1.03106 0.85821 1.21569 1.02144 0.95654 0.94474 1.21631 0.91763 0.96367 1.03952 1.21636 0.96543 0.94722 0.90310 0.97170 1.21735 0.99661 0.95280 1.02342 1.62415 1.11467 1.13697 1.37250 1.19601 0.85027 0.95544 0.94211 1.22748 0.95243 1.38480 1.09873 0.94290 1.27141 0.95446 0.97355 1.02956 1.70880 1.38849 1.35869 1.11402 0.83014 0.75208 0.75604 0.72939 1.19163 1.20893 1.20473 1.21394 0.93585 0.89639 0.98827 0.92197 0.92433 0.92204 0.92057 0.92083 0.89930 0.89964 0.93012 0.93116 0.74376 0.93641 0.86956 0.88917 0.89494 0.91867 0.90195 0.95468 0.96170 0.99255 0.93313 0.94501 0.97582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.12 -1.40 5.93 30.59 0.18 -1.22 16 3 C -0.12 -1.31 5.33 30.59 0.16 -1.15 16 4 C 0.12 2.21 5.67 86.38 0.49 2.70 16 5 N -0.71 -14.43 5.46 -463.06 -2.53 -16.95 16 6 C 0.52 16.17 7.16 87.66 0.63 16.80 16 7 O -0.59 -25.34 15.99 -3.05 -0.05 -25.39 16 8 C -0.09 -2.82 2.69 -11.49 -0.03 -2.85 16 9 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 10 C -0.10 -2.39 5.16 30.68 0.16 -2.23 16 11 C -0.10 -2.50 5.37 30.65 0.16 -2.33 16 12 C 0.08 2.87 2.09 44.94 0.09 2.97 16 13 H 0.01 0.46 6.84 -2.39 -0.02 0.44 16 14 C -0.13 -4.66 8.53 71.98 0.61 -4.04 16 15 N -0.52 -23.28 4.69 -875.66 -4.11 -27.39 16 16 C 0.18 10.02 4.07 85.56 0.35 10.37 16 17 C -0.62 -37.16 7.72 25.60 0.20 -36.97 16 18 H 0.04 2.37 5.86 -2.91 -0.02 2.35 16 19 C -0.03 -1.82 5.46 84.65 0.46 -1.36 16 20 N -0.93 -59.47 13.65 21.45 0.29 -59.18 16 21 Si 1.11 53.86 29.90 68.60 2.05 55.91 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 25 C 0.09 4.18 3.61 86.33 0.31 4.49 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.42 5.11 7.94 -92.71 -0.74 4.38 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 1.58 7.65 -2.39 -0.02 1.56 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.03 1.14 6.64 -2.39 -0.02 1.12 16 43 H 0.02 1.14 6.10 -2.38 -0.01 1.12 16 44 H -0.01 -0.64 7.80 -2.39 -0.02 -0.66 16 45 H 0.26 16.55 7.18 -92.71 -0.67 15.88 16 46 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 47 H 0.01 0.31 6.69 -2.39 -0.02 0.29 16 Total: -1.00 -78.17 362.66 0.44 -77.73 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.29 Total: 10.71 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.50 Total: -15.44 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -6.34 Total: -103.52 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.05 Total: -25.39 kcal Atomic # 14 Polarization: 53.86 SS G_CDS: 2.05 Total: 55.91 kcal Total: -78.17 0.44 -77.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069173380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.291 kcal (2) G-P(sol) polarization free energy of solvation -78.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds