Wall clock time and date at job start Tue Mar 31 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99872 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.50216 * 59.99755 * 8 6 5 10 10 C 1.53115 * 109.50415 * 299.92007 * 8 6 5 11 11 C 1.53126 * 109.15856 * 182.44439 * 10 8 6 12 12 C 1.53033 * 109.31158 * 57.59310 * 11 10 8 13 13 H 1.09003 * 109.45261 * 60.85331 * 12 11 10 14 14 C 1.52998 * 109.46214 * 180.82302 * 12 11 10 15 15 N 1.46848 * 109.52460 * 300.84494 * 12 11 10 16 16 C 1.46898 * 110.99750 * 185.84137 * 15 12 11 17 17 C 1.50706 * 109.46676 * 301.82956 * 16 15 12 18 18 H 1.07997 * 120.00288 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99787 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00396 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99918 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46892 * 90.00476 * 21 19 17 23 23 H 1.48504 * 109.47267 * 209.99971 * 21 19 17 24 24 H 1.48500 * 109.47450 * 330.00426 * 21 19 17 25 25 C 1.46848 * 111.19780 * 61.73975 * 15 12 11 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 35 35 H 0.97005 * 120.00448 * 359.97438 * 5 4 3 36 36 H 1.08998 * 109.52308 * 302.30956 * 10 8 6 37 37 H 1.09009 * 109.52317 * 62.50038 * 10 8 6 38 38 H 1.09006 * 109.47101 * 297.65180 * 11 10 8 39 39 H 1.09000 * 109.53636 * 177.57864 * 11 10 8 40 40 H 1.09001 * 109.46917 * 180.02562 * 14 12 11 41 41 H 1.08993 * 109.47625 * 300.05466 * 14 12 11 42 42 H 1.09002 * 109.46715 * 60.05753 * 14 12 11 43 43 H 1.08996 * 109.47648 * 61.83447 * 16 15 12 44 44 H 1.08999 * 109.46801 * 181.83519 * 16 15 12 45 45 H 0.96999 * 120.00231 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.45828 * 178.24239 * 25 15 12 47 47 H 1.08994 * 109.45634 * 58.27135 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0584 2.8235 0.0000 6 6 5.3835 3.0697 0.0001 7 8 6.1715 2.1479 0.0001 8 6 5.8859 4.4906 0.0001 9 1 5.5227 5.0049 0.8899 10 6 5.3777 5.2125 -1.2508 11 6 5.9423 6.6357 -1.2739 12 6 7.4710 6.5743 -1.2388 13 1 7.8330 6.0374 -2.1156 14 6 8.0384 7.9952 -1.2410 15 7 7.9063 5.8755 -0.0228 16 6 9.3682 5.9186 0.1144 17 6 10.0053 5.2941 -1.1002 18 1 9.3861 4.9045 -1.8947 19 6 11.3786 5.2200 -1.1972 20 7 11.9347 4.6755 -2.2573 21 14 12.4496 5.8946 0.1767 22 1 12.7107 4.8237 1.1720 23 1 13.7381 6.3701 -0.3880 24 1 11.7516 7.0259 0.8386 25 6 7.4162 4.4913 -0.0017 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 0.8891 34 1 3.9329 0.9286 -0.8908 35 1 3.4281 3.5609 0.0003 36 1 5.7076 4.6759 -2.1404 37 1 4.2885 5.2524 -1.2313 38 1 5.5800 7.1845 -0.4045 39 1 5.6191 7.1413 -2.1839 40 1 9.1272 7.9516 -1.2164 41 1 7.7154 8.5141 -2.1435 42 1 7.6768 8.5322 -0.3640 43 1 9.6944 6.9548 0.2035 44 1 9.6659 5.3661 1.0055 45 1 12.9009 4.6238 -2.3256 46 1 7.7808 3.9908 0.8953 47 1 7.7786 3.9644 -0.8843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069173381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:54 Heat of formation + Delta-G solvation = -62.074459 kcal Electronic energy + Delta-G solvation = -22978.920088 eV Core-core repulsion = 19774.394222 eV Total energy + Delta-G solvation = -3204.525866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99796 -38.15026 -36.29644 -34.03345 -33.52516 -32.15265 -31.58275 -29.18932 -27.52025 -26.70212 -24.02452 -23.30307 -21.87448 -21.60261 -21.31445 -19.67285 -18.93467 -16.85163 -16.69168 -16.12859 -15.96631 -15.10949 -14.66409 -14.47877 -14.11242 -13.98796 -13.84483 -13.70312 -13.44560 -12.91960 -12.76911 -12.56999 -12.20195 -11.98260 -11.80176 -11.64450 -11.49559 -11.45044 -11.23374 -11.22532 -10.97440 -10.94562 -10.66058 -10.40302 -10.24970 -10.14513 -9.97456 -9.63553 -9.46636 -9.25991 -9.02747 -8.53326 -7.14594 -6.04428 -4.03586 2.87156 3.22415 3.31945 3.39136 3.42133 4.44371 4.52332 4.59619 4.66749 4.81863 4.97671 5.05130 5.10007 5.21789 5.25344 5.29126 5.32688 5.44335 5.53842 5.56466 5.59006 5.69110 5.80175 5.83340 5.92009 5.95401 5.98606 6.07313 6.15183 6.22427 6.27113 6.42249 6.46492 6.52824 6.58632 6.87144 6.90890 6.99092 7.04937 7.18542 7.55914 7.63575 8.10425 8.17499 8.42085 8.51021 8.98842 9.58385 11.08753 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.003529 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.194420 B = 7932.667684 C = 8607.739592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.737 5.737 6 C 0.518 3.482 7 O -0.531 6.531 8 C -0.103 4.103 9 H 0.098 0.902 10 C -0.107 4.107 11 C -0.109 4.109 12 C 0.084 3.916 13 H 0.052 0.948 14 C -0.140 4.140 15 N -0.531 5.531 16 C 0.152 3.848 17 C -0.546 4.546 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.900 5.900 21 Si 0.876 3.124 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.084 3.916 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.022 0.978 45 H 0.263 0.737 46 H 0.070 0.930 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.060 -1.443 4.314 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.006 4.006 5 N -0.391 5.391 6 C 0.304 3.696 7 O -0.406 6.406 8 C -0.125 4.125 9 H 0.116 0.884 10 C -0.145 4.145 11 C -0.147 4.147 12 C -0.025 4.025 13 H 0.070 0.930 14 C -0.197 4.197 15 N -0.255 5.255 16 C 0.026 3.974 17 C -0.584 4.584 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.538 5.538 21 Si 0.703 3.297 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.188 1.188 25 C -0.045 4.045 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.490 -1.919 4.637 22.068 hybrid contribution 0.759 0.075 -0.094 0.768 sum -20.732 -1.844 4.543 21.304 Atomic orbital electron populations 1.21763 0.95596 1.01739 1.01840 1.21440 0.95988 0.96051 1.02602 1.21824 0.94397 0.97955 1.02693 1.21328 0.93381 0.83569 1.02359 1.46055 1.07414 1.08407 1.77212 1.20886 0.81696 0.91946 0.75065 1.90724 1.55189 1.46580 1.48148 1.21402 0.99240 0.91328 1.00509 0.88361 1.21528 0.99088 0.96956 0.96891 1.21654 0.96366 0.95283 1.01426 1.21418 0.92434 0.95236 0.93374 0.92977 1.21794 1.02656 0.95346 0.99943 1.62366 1.13722 1.13363 1.36048 1.20224 0.83344 0.97220 0.96619 1.21669 0.92360 1.39527 1.04887 0.90783 1.24960 0.98088 0.94563 0.95442 1.69930 1.10802 1.44641 1.28437 0.86838 0.80061 0.80070 0.82696 1.20220 1.21385 1.18789 1.21602 0.89607 0.90753 1.02560 0.92716 0.92699 0.92646 0.91614 0.91648 0.91342 0.91317 0.91706 0.91664 0.76783 0.91770 0.92299 0.91597 0.91989 0.91097 0.93634 0.93241 0.94639 0.95971 0.92768 0.91148 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.50 16 2 C -0.12 -0.81 5.93 -26.74 -0.16 -0.97 16 3 C -0.13 -0.92 5.33 -26.73 -0.14 -1.06 16 4 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 5 N -0.74 -8.30 5.46 -60.30 -0.33 -8.63 16 6 C 0.52 8.15 7.16 -10.98 -0.08 8.07 16 7 O -0.53 -10.87 15.98 5.56 0.09 -10.78 16 8 C -0.10 -1.58 2.69 -91.69 -0.25 -1.83 16 9 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 10 C -0.11 -1.45 5.16 -26.61 -0.14 -1.58 16 11 C -0.11 -1.57 5.37 -26.65 -0.14 -1.71 16 12 C 0.08 1.59 1.99 -67.72 -0.13 1.45 16 13 H 0.05 1.16 6.57 -51.93 -0.34 0.82 16 14 C -0.14 -2.49 8.76 37.16 0.33 -2.16 16 15 N -0.53 -11.03 4.69 -228.13 -1.07 -12.10 16 16 C 0.15 3.70 3.65 -4.97 -0.02 3.68 16 17 C -0.55 -15.38 8.14 -34.44 -0.28 -15.66 16 18 H 0.07 2.29 6.08 -52.49 -0.32 1.97 16 19 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 21 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 25 C 0.08 1.71 3.71 -3.83 -0.01 1.69 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.40 3.30 7.95 -40.82 -0.32 2.97 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.60 7.65 -51.92 -0.40 0.20 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.45 6.24 -51.93 -0.32 1.13 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.86 5.38 -51.93 -0.28 0.58 16 44 H 0.02 0.55 7.49 -51.93 -0.39 0.16 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 47 H 0.05 1.23 6.97 -51.93 -0.36 0.87 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -32.90 360.07 -9.22 -42.12 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.66 Total: 1.43 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.78 Total: -7.40 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.63 Total: -47.89 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.90 -9.22 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069173381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.956 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds