Wall clock time and date at job start Tue Mar 31 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99872 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 179.97438 * 6 5 4 9 9 H 1.09002 * 109.50216 * 59.99755 * 8 6 5 10 10 C 1.53115 * 109.50415 * 299.92007 * 8 6 5 11 11 C 1.53126 * 109.15856 * 182.44439 * 10 8 6 12 12 C 1.53033 * 109.31158 * 57.59310 * 11 10 8 13 13 H 1.09003 * 109.45261 * 60.85331 * 12 11 10 14 14 C 1.52998 * 109.46214 * 180.82302 * 12 11 10 15 15 N 1.46848 * 109.52460 * 300.84494 * 12 11 10 16 16 C 1.46898 * 110.99750 * 185.84137 * 15 12 11 17 17 C 1.50706 * 109.46676 * 301.82956 * 16 15 12 18 18 H 1.07997 * 120.00288 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99787 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00396 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99918 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46892 * 90.00476 * 21 19 17 23 23 H 1.48504 * 109.47267 * 209.99971 * 21 19 17 24 24 H 1.48500 * 109.47450 * 330.00426 * 21 19 17 25 25 C 1.46848 * 111.19780 * 61.73975 * 15 12 11 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 35 35 H 0.97005 * 120.00448 * 359.97438 * 5 4 3 36 36 H 1.08998 * 109.52308 * 302.30956 * 10 8 6 37 37 H 1.09009 * 109.52317 * 62.50038 * 10 8 6 38 38 H 1.09006 * 109.47101 * 297.65180 * 11 10 8 39 39 H 1.09000 * 109.53636 * 177.57864 * 11 10 8 40 40 H 1.09001 * 109.46917 * 180.02562 * 14 12 11 41 41 H 1.08993 * 109.47625 * 300.05466 * 14 12 11 42 42 H 1.09002 * 109.46715 * 60.05753 * 14 12 11 43 43 H 1.08996 * 109.47648 * 61.83447 * 16 15 12 44 44 H 1.08999 * 109.46801 * 181.83519 * 16 15 12 45 45 H 0.96999 * 120.00231 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.45828 * 178.24239 * 25 15 12 47 47 H 1.08994 * 109.45634 * 58.27135 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0584 2.8235 0.0000 6 6 5.3835 3.0697 0.0001 7 8 6.1715 2.1479 0.0001 8 6 5.8859 4.4906 0.0001 9 1 5.5227 5.0049 0.8899 10 6 5.3777 5.2125 -1.2508 11 6 5.9423 6.6357 -1.2739 12 6 7.4710 6.5743 -1.2388 13 1 7.8330 6.0374 -2.1156 14 6 8.0384 7.9952 -1.2410 15 7 7.9063 5.8755 -0.0228 16 6 9.3682 5.9186 0.1144 17 6 10.0053 5.2941 -1.1002 18 1 9.3861 4.9045 -1.8947 19 6 11.3786 5.2200 -1.1972 20 7 11.9347 4.6755 -2.2573 21 14 12.4496 5.8946 0.1767 22 1 12.7107 4.8237 1.1720 23 1 13.7381 6.3701 -0.3880 24 1 11.7516 7.0259 0.8386 25 6 7.4162 4.4913 -0.0017 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 0.8891 34 1 3.9329 0.9286 -0.8908 35 1 3.4281 3.5609 0.0003 36 1 5.7076 4.6759 -2.1404 37 1 4.2885 5.2524 -1.2313 38 1 5.5800 7.1845 -0.4045 39 1 5.6191 7.1413 -2.1839 40 1 9.1272 7.9516 -1.2164 41 1 7.7154 8.5141 -2.1435 42 1 7.6768 8.5322 -0.3640 43 1 9.6944 6.9548 0.2035 44 1 9.6659 5.3661 1.0055 45 1 12.9009 4.6238 -2.3256 46 1 7.7808 3.9908 0.8953 47 1 7.7786 3.9644 -0.8843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069173381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:53 Heat of formation + Delta-G solvation = -86.230893 kcal Electronic energy + Delta-G solvation = -22979.967589 eV Core-core repulsion = 19774.394222 eV Total energy + Delta-G solvation = -3205.573367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32252 -39.61587 -37.15106 -35.58206 -34.67869 -33.92400 -33.20202 -30.03703 -29.37087 -28.08208 -25.45835 -24.53592 -23.30575 -22.77665 -22.22361 -20.94003 -20.59023 -18.76185 -18.10736 -17.21858 -16.90868 -16.53531 -16.21605 -15.99360 -15.65893 -15.24715 -15.01870 -14.78549 -14.53990 -14.47395 -14.14219 -13.88954 -13.39517 -13.25476 -13.17987 -13.10782 -12.71443 -12.69453 -12.45499 -12.29643 -12.10600 -12.04164 -12.00112 -11.91059 -11.82821 -11.62407 -11.49709 -11.47859 -11.01098 -10.80869 -10.66377 -10.10946 -9.00666 -8.32393 -6.36925 1.32898 1.34135 1.46158 1.61253 2.15426 2.32183 3.02824 3.27391 3.66879 3.83311 3.88728 3.98760 4.03169 4.15420 4.23053 4.28402 4.44388 4.48845 4.58896 4.64951 4.68473 4.75718 4.79734 4.82806 4.93418 4.95320 4.97159 5.03221 5.05322 5.07160 5.09353 5.13193 5.24978 5.27154 5.31101 5.36957 5.39531 5.44880 5.49419 5.51785 5.62362 6.10114 6.34597 6.45871 6.56211 6.69668 7.27152 7.29185 8.84685 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.003529 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.194420 B = 7932.667684 C = 8607.739592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.516 3.484 7 O -0.591 6.591 8 C -0.092 4.092 9 H 0.132 0.868 10 C -0.102 4.102 11 C -0.099 4.099 12 C 0.076 3.924 13 H 0.002 0.998 14 C -0.135 4.135 15 N -0.517 5.517 16 C 0.158 3.842 17 C -0.542 4.542 18 H 0.026 0.974 19 C 0.006 3.994 20 N -0.951 5.951 21 Si 0.949 3.051 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.238 1.238 25 C 0.089 3.911 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.419 0.581 36 H 0.037 0.963 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.046 0.954 44 H 0.018 0.982 45 H 0.265 0.735 46 H 0.050 0.950 47 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.252 0.869 6.165 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.009 4.009 5 N -0.365 5.365 6 C 0.303 3.697 7 O -0.471 6.471 8 C -0.113 4.113 9 H 0.149 0.851 10 C -0.140 4.140 11 C -0.137 4.137 12 C -0.032 4.032 13 H 0.020 0.980 14 C -0.193 4.193 15 N -0.240 5.240 16 C 0.030 3.970 17 C -0.581 4.581 18 H 0.044 0.956 19 C -0.191 4.191 20 N -0.592 5.592 21 Si 0.772 3.228 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.161 1.161 25 C -0.041 4.041 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.256 0.744 36 H 0.056 0.944 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -24.770 0.425 6.490 25.609 hybrid contribution 1.688 -0.724 -0.763 1.989 sum -23.082 -0.298 5.728 23.783 Atomic orbital electron populations 1.21742 0.94515 1.02105 1.02335 1.21457 0.96870 0.95759 1.02233 1.21756 0.91277 0.98514 1.04016 1.21428 0.95836 0.82560 1.01037 1.45835 1.06068 1.09750 1.74865 1.20979 0.82778 0.91420 0.74542 1.90711 1.57036 1.48111 1.51244 1.21303 0.95015 0.91938 1.03077 0.85065 1.21571 1.02094 0.95856 0.94504 1.21625 0.91965 0.96180 1.03932 1.21609 0.96318 0.94988 0.90313 0.97955 1.21755 1.00315 0.94880 1.02308 1.62456 1.11252 1.13321 1.36951 1.20098 0.85669 0.96978 0.94220 1.21862 0.92254 1.38868 1.05112 0.95560 1.25971 0.99774 0.95021 0.98321 1.70096 1.11294 1.46749 1.31069 0.85690 0.78003 0.80078 0.79077 1.19740 1.20735 1.16147 1.21481 0.93770 0.89804 0.99007 0.92101 0.92273 0.92451 0.92232 0.91970 0.89789 0.90074 0.92869 0.93396 0.74359 0.94439 0.87027 0.88846 0.89529 0.94627 0.91279 0.90799 0.93571 0.96358 0.92610 0.93126 0.98499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.12 -1.44 5.93 30.59 0.18 -1.26 16 3 C -0.12 -1.34 5.33 30.59 0.16 -1.18 16 4 C 0.12 2.25 5.67 86.38 0.49 2.74 16 5 N -0.71 -14.52 5.46 -463.07 -2.53 -17.05 16 6 C 0.52 16.09 7.16 87.66 0.63 16.72 16 7 O -0.59 -25.46 15.98 -3.01 -0.05 -25.51 16 8 C -0.09 -2.71 2.69 -11.49 -0.03 -2.74 16 9 H 0.13 3.08 8.14 -2.39 -0.02 3.07 16 10 C -0.10 -2.51 5.16 30.67 0.16 -2.35 16 11 C -0.10 -2.52 5.37 30.65 0.16 -2.36 16 12 C 0.08 2.87 1.99 44.94 0.09 2.96 16 13 H 0.00 0.11 6.57 -2.39 -0.02 0.10 16 14 C -0.14 -4.61 8.76 71.98 0.63 -3.97 16 15 N -0.52 -21.62 4.69 -875.67 -4.11 -25.73 16 16 C 0.16 7.81 3.65 85.56 0.31 8.12 16 17 C -0.54 -32.38 8.14 25.60 0.21 -32.17 16 18 H 0.03 1.78 6.08 -2.91 -0.02 1.76 16 19 C 0.01 0.39 5.47 84.65 0.46 0.85 16 20 N -0.95 -62.13 13.96 21.45 0.30 -61.83 16 21 Si 0.95 45.70 27.47 68.60 1.88 47.59 16 22 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 25 C 0.09 3.78 3.71 86.32 0.32 4.10 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.42 5.12 7.95 -92.70 -0.74 4.38 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.64 7.65 -2.38 -0.02 1.62 16 38 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.03 1.44 6.24 -2.39 -0.01 1.43 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.05 2.21 5.38 -2.39 -0.01 2.19 16 44 H 0.02 0.92 7.49 -2.39 -0.02 0.90 16 45 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 46 H 0.05 2.30 8.04 -2.39 -0.02 2.28 16 47 H 0.00 -0.18 6.97 -2.39 -0.02 -0.20 16 Total: -1.00 -79.78 360.07 0.12 -79.66 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.13 Total: 14.07 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.49 Total: -11.19 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -6.34 Total: -104.61 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.59 kcal Total: -79.78 0.12 -79.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069173381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.575 kcal (2) G-P(sol) polarization free energy of solvation -79.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds