Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46786 * 2 1 4 4 C 1.53005 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47451 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00152 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99845 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.50167 * 299.91926 * 8 6 5 10 10 C 1.53112 * 109.50460 * 60.00316 * 8 6 5 11 11 C 1.53120 * 109.16248 * 62.28329 * 10 8 6 12 12 C 1.53036 * 109.27831 * 57.65718 * 11 10 8 13 13 H 1.08997 * 109.46087 * 60.83549 * 12 11 10 14 14 C 1.52993 * 109.46548 * 180.80647 * 12 11 10 15 15 N 1.46851 * 109.51961 * 300.81958 * 12 11 10 16 16 C 1.46901 * 110.99685 * 185.83521 * 15 12 11 17 17 C 1.50704 * 109.46758 * 168.52932 * 16 15 12 18 18 H 1.08001 * 120.00180 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99645 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00520 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00009 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47228 * 59.99665 * 21 19 17 23 23 H 1.48495 * 109.47592 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47044 * 300.00084 * 21 19 17 25 25 C 1.46844 * 111.19709 * 61.74367 * 15 12 11 26 26 H 1.09004 * 109.46381 * 299.99640 * 1 2 3 27 27 H 1.08999 * 109.47186 * 59.99330 * 1 2 3 28 28 H 1.08994 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46858 * 240.00758 * 2 1 3 30 30 H 1.09000 * 109.47001 * 120.00157 * 2 1 3 31 31 H 1.09004 * 109.47367 * 60.00963 * 3 2 1 32 32 H 1.08999 * 109.47805 * 300.00291 * 3 2 1 33 33 H 1.09003 * 109.46774 * 59.99687 * 4 3 2 34 34 H 1.09008 * 109.46912 * 300.00673 * 4 3 2 35 35 H 0.96998 * 119.99755 * 0.02562 * 5 4 3 36 36 H 1.09008 * 109.52094 * 302.38188 * 10 8 6 37 37 H 1.09004 * 109.52549 * 182.19185 * 10 8 6 38 38 H 1.08993 * 109.50286 * 297.71277 * 11 10 8 39 39 H 1.08999 * 109.50283 * 177.59517 * 11 10 8 40 40 H 1.08994 * 109.47797 * 187.00880 * 14 12 11 41 41 H 1.09008 * 109.46905 * 307.00579 * 14 12 11 42 42 H 1.09002 * 109.47406 * 67.00360 * 14 12 11 43 43 H 1.09006 * 109.46861 * 48.53532 * 16 15 12 44 44 H 1.08991 * 109.47776 * 288.53285 * 16 15 12 45 45 H 0.96996 * 120.00618 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.46461 * 58.27673 * 25 15 12 47 47 H 1.09004 * 109.46159 * 178.24021 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3835 3.0700 0.0001 7 8 6.1716 2.1482 -0.0008 8 6 5.8858 4.4909 0.0013 9 1 5.5238 5.0056 -0.8887 10 6 5.3760 5.2123 1.2519 11 6 5.9370 4.5183 2.4962 12 6 7.4658 4.5184 2.4287 13 1 7.8282 5.5461 2.4043 14 6 8.0306 3.8081 3.6605 15 7 7.9035 3.8162 1.2155 16 6 9.3655 3.6757 1.1871 17 6 9.7568 2.7185 0.0908 18 1 8.9957 2.2607 -0.5236 19 6 11.0866 2.4273 -0.1278 20 7 12.0135 2.9843 0.6207 21 14 11.5719 1.2414 -1.4870 22 1 11.1001 1.7662 -2.7937 23 1 13.0497 1.0992 -1.5158 24 1 10.9515 -0.0836 -1.2327 25 6 7.4162 4.4917 0.0061 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 3.4281 3.5610 0.0011 36 1 4.2867 5.1762 1.2747 37 1 5.7067 6.2508 1.2337 38 1 5.5744 3.4912 2.5346 39 1 5.6121 5.0531 3.3887 40 1 9.1150 3.9159 3.6769 41 1 7.6077 4.2522 4.5617 42 1 7.7712 2.7501 3.6207 43 1 9.7122 3.2910 2.1462 44 1 9.8205 4.6483 0.9998 45 1 12.9491 2.7797 0.4667 46 1 7.7789 5.5195 -0.0070 47 1 7.7824 3.9662 -0.8759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069173383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -55.371044 kcal Electronic energy + Delta-G solvation = -23504.552804 eV Core-core repulsion = 20300.317621 eV Total energy + Delta-G solvation = -3204.235184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.91330 -37.72346 -36.01122 -33.83334 -33.28149 -32.28263 -31.39800 -28.98441 -27.19358 -26.33779 -24.04287 -23.47097 -21.79908 -21.44792 -21.26240 -19.79181 -18.70726 -16.28663 -16.04735 -16.01750 -15.78038 -15.32614 -14.46155 -14.39569 -14.09848 -13.90200 -13.69740 -13.47239 -13.20106 -12.92372 -12.53251 -12.30950 -12.16671 -11.78131 -11.63385 -11.36955 -11.35631 -11.34025 -11.25831 -11.13003 -11.05733 -10.84019 -10.65313 -10.62662 -10.32699 -9.99638 -9.90862 -9.32485 -9.05320 -8.95976 -8.70369 -8.23920 -6.94306 -5.85430 -3.83342 3.29063 3.45642 3.47952 3.48495 3.54078 4.57828 4.66677 4.70983 4.80671 4.91427 5.04040 5.14729 5.19057 5.20339 5.31455 5.40788 5.46117 5.50222 5.55041 5.69985 5.71408 5.79006 5.79080 5.87294 5.94547 5.99289 6.05933 6.08435 6.11297 6.15838 6.20896 6.35468 6.46788 6.51574 6.71203 6.77300 6.84164 6.92887 7.48947 7.51791 7.87371 8.05261 8.30725 8.42215 8.78855 8.85373 9.28390 9.79559 11.25771 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.004641 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.944416 B = 6031.777992 C = 7173.216876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.129 4.129 4 C 0.121 3.879 5 N -0.748 5.748 6 C 0.514 3.486 7 O -0.484 6.484 8 C -0.107 4.107 9 H 0.087 0.913 10 C -0.108 4.108 11 C -0.111 4.111 12 C 0.078 3.922 13 H 0.024 0.976 14 C -0.141 4.141 15 N -0.513 5.513 16 C 0.192 3.808 17 C -0.493 4.493 18 H 0.069 0.931 19 C 0.051 3.949 20 N -0.906 5.906 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.084 3.916 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.391 0.609 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.061 0.939 43 H 0.037 0.963 44 H -0.016 1.016 45 H 0.258 0.742 46 H 0.023 0.977 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.867 2.378 0.855 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.167 4.167 4 C -0.003 4.003 5 N -0.403 5.403 6 C 0.300 3.700 7 O -0.355 6.355 8 C -0.129 4.129 9 H 0.106 0.894 10 C -0.145 4.145 11 C -0.149 4.149 12 C -0.031 4.031 13 H 0.042 0.958 14 C -0.199 4.199 15 N -0.238 5.238 16 C 0.067 3.933 17 C -0.532 4.532 18 H 0.087 0.913 19 C -0.149 4.149 20 N -0.547 5.547 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.045 4.045 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.224 0.776 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.002 0.998 45 H 0.068 0.932 46 H 0.041 0.959 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.232 1.195 0.893 21.284 hybrid contribution 0.371 0.588 -0.732 1.010 sum -20.861 1.783 0.162 20.937 Atomic orbital electron populations 1.21766 0.95747 1.01645 1.01726 1.21445 0.95817 0.96229 1.02623 1.21811 0.94808 0.97721 1.02386 1.21234 0.92882 0.83928 1.02208 1.46097 1.07517 1.07833 1.78849 1.20485 0.81404 0.91764 0.76397 1.90835 1.54360 1.45497 1.44759 1.21518 0.99024 0.93244 0.99074 0.89445 1.21545 0.99282 0.99306 0.94413 1.21646 0.96121 1.00764 0.96368 1.21528 0.93620 0.95193 0.92744 0.95807 1.21843 1.01421 1.01170 0.95455 1.62032 1.15619 1.47637 0.98521 1.19767 0.79936 0.95281 0.98284 1.21263 0.91592 1.24792 1.15564 0.91317 1.24971 0.96604 0.96599 0.96698 1.69955 1.00352 1.44479 1.39901 0.86597 0.76740 0.81847 0.82411 1.20482 1.21631 1.20267 1.21706 0.89941 0.96176 0.96643 0.92774 0.92794 0.92715 0.91665 0.91616 0.91530 0.91584 0.91982 0.91860 0.77556 0.92293 0.91485 0.91506 0.92353 0.91934 0.93775 0.91995 0.94462 0.99778 0.93207 0.95907 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.13 -1.05 5.33 -26.73 -0.14 -1.20 16 4 C 0.12 1.43 5.67 -4.04 -0.02 1.40 16 5 N -0.75 -9.26 5.44 -60.29 -0.33 -9.59 16 6 C 0.51 8.68 5.87 -10.98 -0.06 8.62 16 7 O -0.48 -10.89 15.24 5.56 0.08 -10.81 16 8 C -0.11 -1.63 3.03 -91.69 -0.28 -1.91 16 9 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 10 C -0.11 -1.38 5.43 -26.61 -0.14 -1.52 16 11 C -0.11 -1.67 5.12 -26.65 -0.14 -1.81 16 12 C 0.08 1.47 2.44 -67.72 -0.17 1.31 16 13 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 14 C -0.14 -2.61 8.55 37.15 0.32 -2.29 16 15 N -0.51 -11.61 3.33 -228.12 -0.76 -12.37 16 16 C 0.19 5.23 4.46 -4.97 -0.02 5.21 16 17 C -0.49 -14.71 8.44 -34.44 -0.29 -15.00 16 18 H 0.07 2.11 7.22 -52.49 -0.38 1.73 16 19 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 20 N -0.91 -28.03 13.29 55.43 0.74 -27.30 16 21 Si 0.90 23.07 29.54 -169.99 -5.02 18.05 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.08 1.71 4.29 -3.84 -0.02 1.69 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.39 3.60 7.86 -40.82 -0.32 3.28 16 36 H 0.06 0.59 7.51 -51.92 -0.39 0.20 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.11 7.35 -51.93 -0.38 0.73 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.26 6.50 -51.93 -0.34 0.92 16 41 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.04 1.07 5.74 -51.93 -0.30 0.78 16 44 H -0.02 -0.45 8.11 -51.93 -0.42 -0.87 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 2.05 6.74 -51.93 -0.35 1.70 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -34.11 363.71 -9.44 -43.55 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.78 Total: -1.22 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.85 Total: -5.80 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.35 Total: -49.25 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.11 -9.44 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069173383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.822 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds