Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46786 * 2 1 4 4 C 1.53005 * 109.46998 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47451 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00152 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99845 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.50167 * 299.91926 * 8 6 5 10 10 C 1.53112 * 109.50460 * 60.00316 * 8 6 5 11 11 C 1.53120 * 109.16248 * 62.28329 * 10 8 6 12 12 C 1.53036 * 109.27831 * 57.65718 * 11 10 8 13 13 H 1.08997 * 109.46087 * 60.83549 * 12 11 10 14 14 C 1.52993 * 109.46548 * 180.80647 * 12 11 10 15 15 N 1.46851 * 109.51961 * 300.81958 * 12 11 10 16 16 C 1.46901 * 110.99685 * 185.83521 * 15 12 11 17 17 C 1.50704 * 109.46758 * 168.52932 * 16 15 12 18 18 H 1.08001 * 120.00180 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99645 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00520 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00009 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47228 * 59.99665 * 21 19 17 23 23 H 1.48495 * 109.47592 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47044 * 300.00084 * 21 19 17 25 25 C 1.46844 * 111.19709 * 61.74367 * 15 12 11 26 26 H 1.09004 * 109.46381 * 299.99640 * 1 2 3 27 27 H 1.08999 * 109.47186 * 59.99330 * 1 2 3 28 28 H 1.08994 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46858 * 240.00758 * 2 1 3 30 30 H 1.09000 * 109.47001 * 120.00157 * 2 1 3 31 31 H 1.09004 * 109.47367 * 60.00963 * 3 2 1 32 32 H 1.08999 * 109.47805 * 300.00291 * 3 2 1 33 33 H 1.09003 * 109.46774 * 59.99687 * 4 3 2 34 34 H 1.09008 * 109.46912 * 300.00673 * 4 3 2 35 35 H 0.96998 * 119.99755 * 0.02562 * 5 4 3 36 36 H 1.09008 * 109.52094 * 302.38188 * 10 8 6 37 37 H 1.09004 * 109.52549 * 182.19185 * 10 8 6 38 38 H 1.08993 * 109.50286 * 297.71277 * 11 10 8 39 39 H 1.08999 * 109.50283 * 177.59517 * 11 10 8 40 40 H 1.08994 * 109.47797 * 187.00880 * 14 12 11 41 41 H 1.09008 * 109.46905 * 307.00579 * 14 12 11 42 42 H 1.09002 * 109.47406 * 67.00360 * 14 12 11 43 43 H 1.09006 * 109.46861 * 48.53532 * 16 15 12 44 44 H 1.08991 * 109.47776 * 288.53285 * 16 15 12 45 45 H 0.96996 * 120.00618 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.46461 * 58.27673 * 25 15 12 47 47 H 1.09004 * 109.46159 * 178.24021 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3835 3.0700 0.0001 7 8 6.1716 2.1482 -0.0008 8 6 5.8858 4.4909 0.0013 9 1 5.5238 5.0056 -0.8887 10 6 5.3760 5.2123 1.2519 11 6 5.9370 4.5183 2.4962 12 6 7.4658 4.5184 2.4287 13 1 7.8282 5.5461 2.4043 14 6 8.0306 3.8081 3.6605 15 7 7.9035 3.8162 1.2155 16 6 9.3655 3.6757 1.1871 17 6 9.7568 2.7185 0.0908 18 1 8.9957 2.2607 -0.5236 19 6 11.0866 2.4273 -0.1278 20 7 12.0135 2.9843 0.6207 21 14 11.5719 1.2414 -1.4870 22 1 11.1001 1.7662 -2.7937 23 1 13.0497 1.0992 -1.5158 24 1 10.9515 -0.0836 -1.2327 25 6 7.4162 4.4917 0.0061 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 3.4281 3.5610 0.0011 36 1 4.2867 5.1762 1.2747 37 1 5.7067 6.2508 1.2337 38 1 5.5744 3.4912 2.5346 39 1 5.6121 5.0531 3.3887 40 1 9.1150 3.9159 3.6769 41 1 7.6077 4.2522 4.5617 42 1 7.7712 2.7501 3.6207 43 1 9.7122 3.2910 2.1462 44 1 9.8205 4.6483 0.9998 45 1 12.9491 2.7797 0.4667 46 1 7.7789 5.5195 -0.0070 47 1 7.7824 3.9662 -0.8759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069173383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -78.918582 kcal Electronic energy + Delta-G solvation = -23505.573902 eV Core-core repulsion = 20300.317621 eV Total energy + Delta-G solvation = -3205.256282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27596 -39.15741 -36.96300 -35.51122 -34.57713 -33.86821 -33.11935 -29.86148 -29.01470 -27.96983 -25.59788 -24.66633 -23.21537 -22.80890 -22.16467 -21.30211 -19.99537 -18.43719 -17.44580 -17.27104 -16.82002 -16.66573 -16.22410 -15.93118 -15.42688 -15.09088 -14.86238 -14.73707 -14.41748 -14.25081 -14.06109 -13.64449 -13.47215 -13.23107 -13.09233 -12.88312 -12.74365 -12.65617 -12.56313 -12.42579 -12.36963 -12.08535 -11.99730 -11.94510 -11.72100 -11.57145 -11.47426 -11.08716 -10.90337 -10.54865 -10.42060 -9.88080 -8.75948 -8.17303 -6.24511 1.34585 1.39100 1.47564 1.99294 2.38432 2.40625 3.13073 3.33470 3.79564 3.92669 3.95035 3.95593 4.06205 4.08838 4.22006 4.37383 4.43935 4.48493 4.52123 4.69069 4.69871 4.73478 4.77949 4.85157 4.89156 4.95483 4.99205 5.04295 5.07211 5.09582 5.14745 5.18307 5.24246 5.29196 5.32012 5.39354 5.42139 5.48370 5.51115 5.67574 5.74213 6.16080 6.49334 6.82070 6.84985 6.94124 7.43614 7.63612 8.93003 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.004641 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.944416 B = 6031.777992 C = 7173.216876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.115 4.115 4 C 0.121 3.879 5 N -0.724 5.724 6 C 0.513 3.487 7 O -0.554 6.554 8 C -0.100 4.100 9 H 0.125 0.875 10 C -0.101 4.101 11 C -0.104 4.104 12 C 0.069 3.931 13 H 0.025 0.975 14 C -0.136 4.136 15 N -0.525 5.525 16 C 0.210 3.790 17 C -0.511 4.511 18 H 0.052 0.948 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.277 1.277 25 C 0.082 3.918 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.413 0.587 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.032 0.968 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.013 0.987 44 H -0.046 1.046 45 H 0.263 0.737 46 H 0.026 0.974 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.161 3.593 0.649 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.003 4.003 5 N -0.379 5.379 6 C 0.299 3.701 7 O -0.429 6.429 8 C -0.121 4.121 9 H 0.143 0.857 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.039 4.039 13 H 0.043 0.957 14 C -0.193 4.193 15 N -0.250 5.250 16 C 0.084 3.916 17 C -0.549 4.549 18 H 0.070 0.930 19 C -0.197 4.197 20 N -0.578 5.578 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.047 4.047 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.031 0.969 44 H -0.029 1.029 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -24.604 2.448 0.689 24.735 hybrid contribution 1.374 0.212 -0.634 1.528 sum -23.230 2.661 0.054 23.382 Atomic orbital electron populations 1.21737 0.94395 1.02075 1.02349 1.21464 0.96938 0.95930 1.02057 1.21728 0.91471 0.98278 1.03814 1.21269 0.95512 0.83153 1.00352 1.45858 1.06405 1.08960 1.76713 1.20812 0.82265 0.91713 0.75277 1.90822 1.56390 1.47437 1.48268 1.21503 0.94974 0.93139 1.02532 0.85691 1.21605 1.01780 0.99259 0.91174 1.21614 0.92451 1.00725 0.99388 1.21765 0.96841 0.94524 0.90794 0.95709 1.21796 0.99736 1.00340 0.97476 1.61934 1.12194 1.49729 1.01094 1.19360 0.83296 0.92887 0.96106 1.21461 0.91719 1.25457 1.16281 0.92969 1.25830 0.96458 0.98264 0.99136 1.70068 1.00747 1.45616 1.41332 0.85543 0.76951 0.79199 0.79515 1.19440 1.20136 1.20249 1.21668 0.93863 0.95099 0.94022 0.92135 0.92133 0.92492 0.92300 0.92326 0.90019 0.90047 0.93849 0.93969 0.75014 0.87813 0.89674 0.93258 0.88808 0.94937 0.89707 0.93992 0.96903 1.02855 0.92827 0.95633 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.99 0.71 -0.87 16 2 C -0.13 -1.75 5.93 30.60 0.18 -1.57 16 3 C -0.12 -1.57 5.33 30.60 0.16 -1.41 16 4 C 0.12 2.74 5.67 86.38 0.49 3.23 16 5 N -0.72 -16.27 5.44 -463.04 -2.52 -18.79 16 6 C 0.51 16.91 5.87 87.66 0.51 17.43 16 7 O -0.55 -25.88 15.24 -3.03 -0.05 -25.93 16 8 C -0.10 -2.85 3.03 -11.49 -0.03 -2.89 16 9 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 10 C -0.10 -2.13 5.43 30.67 0.17 -1.96 16 11 C -0.10 -2.83 5.12 30.65 0.16 -2.67 16 12 C 0.07 2.60 2.44 44.93 0.11 2.71 16 13 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 14 C -0.14 -5.12 8.55 71.98 0.62 -4.50 16 15 N -0.52 -24.74 3.33 -875.65 -2.92 -27.66 16 16 C 0.21 12.19 4.46 85.56 0.38 12.57 16 17 C -0.51 -32.17 8.44 25.60 0.22 -31.96 16 18 H 0.05 3.41 7.22 -2.91 -0.02 3.39 16 19 C 0.00 0.01 5.46 84.65 0.46 0.47 16 20 N -0.94 -59.94 13.29 21.45 0.28 -59.66 16 21 Si 0.96 48.74 29.54 68.60 2.03 50.77 16 22 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 25 C 0.08 3.41 4.29 86.33 0.37 3.78 16 26 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.41 5.75 7.86 -92.71 -0.73 5.02 16 36 H 0.10 1.37 7.51 -2.38 -0.02 1.35 16 37 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.05 1.54 7.35 -2.39 -0.02 1.52 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.03 1.38 6.50 -2.39 -0.02 1.36 16 41 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.01 0.80 5.74 -2.38 -0.01 0.79 16 44 H -0.05 -2.87 8.11 -2.39 -0.02 -2.89 16 45 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 2.32 6.74 -2.38 -0.02 2.31 16 Total: -1.00 -81.13 363.71 1.52 -79.61 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.19 Total: 9.29 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 4.51 Total: -7.63 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -5.15 Total: -106.11 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -81.13 1.52 -79.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069173383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.690 kcal (2) G-P(sol) polarization free energy of solvation -81.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds