Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46744 * 2 1 4 4 C 1.52998 * 109.47001 * 120.00583 * 2 1 3 5 5 C 1.53001 * 109.46892 * 175.00212 * 4 2 1 6 6 N 1.46899 * 109.47107 * 184.61431 * 5 4 2 7 7 C 1.46895 * 111.00118 * 287.30157 * 6 5 4 8 8 C 1.50699 * 109.46879 * 296.37878 * 7 6 5 9 9 H 1.07997 * 120.00243 * 5.24584 * 8 7 6 10 10 C 1.37887 * 119.99878 * 185.24755 * 8 7 6 11 11 N 1.31512 * 119.99540 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47284 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47164 * 120.00088 * 12 10 8 15 15 H 1.48509 * 109.46975 * 239.99775 * 12 10 8 16 16 C 1.46904 * 111.00082 * 163.34382 * 6 5 4 17 17 C 1.50690 * 109.47376 * 190.00315 * 16 6 5 18 18 O 1.21285 * 119.99995 * 359.97438 * 17 16 6 19 19 N 1.34778 * 120.00111 * 180.02562 * 17 16 6 20 20 C 1.46501 * 119.99956 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47192 * 180.02562 * 20 19 17 22 22 C 1.52992 * 117.49876 * 243.62291 * 21 20 19 23 23 C 1.52994 * 117.49893 * 174.99934 * 21 20 19 24 24 H 1.09002 * 109.47555 * 299.99645 * 1 2 3 25 25 H 1.08997 * 109.47249 * 59.99709 * 1 2 3 26 26 H 1.08999 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46849 * 240.00593 * 2 1 3 28 28 H 1.09009 * 109.46882 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47485 * 300.00147 * 3 2 1 30 30 H 1.09008 * 109.47336 * 60.00610 * 3 2 1 31 31 H 1.08995 * 109.47796 * 55.00081 * 4 2 1 32 32 H 1.09001 * 109.46836 * 294.99436 * 4 2 1 33 33 H 1.09001 * 109.47294 * 64.61571 * 5 4 2 34 34 H 1.08998 * 109.47086 * 304.61770 * 5 4 2 35 35 H 1.09001 * 109.47138 * 56.38273 * 7 6 5 36 36 H 1.09005 * 109.47223 * 176.38542 * 7 6 5 37 37 H 0.97004 * 119.99959 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.46875 * 70.00049 * 16 6 5 39 39 H 1.08999 * 109.47003 * 310.00253 * 16 6 5 40 40 H 0.96993 * 120.00158 * 0.02562 * 19 17 16 41 41 H 1.08999 * 109.47179 * 299.99922 * 20 19 17 42 42 H 1.08997 * 109.47316 * 60.00096 * 20 19 17 43 43 H 1.09000 * 115.54991 * 29.33185 * 21 20 19 44 44 H 1.08999 * 117.50380 * 359.97438 * 22 21 20 45 45 H 1.09003 * 117.49891 * 145.02189 * 22 21 20 46 46 H 1.09002 * 117.49763 * 214.97759 * 23 21 20 47 47 H 1.08996 * 117.50005 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0453 -1.6193 2.3306 7 6 3.9409 -0.8533 3.5796 8 6 4.8419 0.3524 3.5062 9 1 5.3679 0.5786 2.5905 10 6 4.9949 1.1669 4.6083 11 7 4.3548 0.8911 5.7235 12 14 6.1111 2.6618 4.5171 13 1 6.7111 2.7497 3.1616 14 1 5.3191 3.8883 4.7888 15 1 7.1910 2.5357 5.5287 16 6 5.4223 -2.0812 2.1097 17 6 5.7940 -3.0801 3.1750 18 8 4.9911 -3.3777 4.0339 19 7 7.0190 -3.6421 3.1738 20 6 7.3806 -4.6129 4.2097 21 6 8.8151 -5.0931 3.9804 22 6 9.0211 -6.5742 3.6574 23 6 9.4234 -6.0271 5.0284 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6765 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6054 -1.7199 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 4.0027 0.1664 1.2248 34 1 3.8567 -1.3219 0.2594 35 1 2.9101 -0.5286 3.7216 36 1 4.2426 -1.4818 4.4176 37 1 4.4627 1.4638 6.4990 38 1 6.1025 -1.2308 2.1558 39 1 5.4948 -2.5517 1.1292 40 1 7.6615 -3.4033 2.4875 41 1 7.3078 -4.1421 5.1901 42 1 6.7006 -5.4635 4.1638 43 1 9.4798 -4.3755 3.4994 44 1 8.1347 -7.2068 3.6087 45 1 9.8214 -6.8315 2.9636 46 1 10.4884 -5.9243 5.2365 47 1 8.8019 -6.2992 5.8814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072691182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = -26.264680 kcal Electronic energy + Delta-G solvation = -22828.517382 eV Core-core repulsion = 19625.544345 eV Total energy + Delta-G solvation = -3202.973037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.25160 -37.68124 -36.93157 -35.04029 -33.62273 -32.35799 -29.30144 -27.94666 -26.82780 -26.52204 -24.52411 -23.07874 -22.52940 -20.93618 -20.51440 -19.39060 -19.25169 -16.79838 -16.27772 -15.99267 -15.24658 -14.86743 -14.77432 -14.59148 -14.21276 -13.96476 -13.82838 -13.28098 -13.19776 -12.82532 -12.51375 -12.25941 -12.10374 -11.87315 -11.68345 -11.43394 -11.29375 -11.10084 -10.95010 -10.85242 -10.62462 -10.57066 -10.41839 -10.27951 -10.21253 -10.13825 -9.88805 -9.85528 -9.48586 -8.90643 -8.58440 -8.27847 -7.07010 -5.94642 -4.03698 3.27085 3.35351 3.36723 3.42245 3.45143 3.77735 4.43341 4.58429 4.78275 4.84672 5.01017 5.18842 5.28192 5.34342 5.36438 5.46020 5.48450 5.53219 5.72423 5.76016 5.83650 5.90346 5.91692 5.94933 5.98183 6.06090 6.12376 6.17033 6.18238 6.24114 6.34268 6.47216 6.49595 6.59182 6.63603 6.87953 6.98054 7.01218 7.39687 7.68008 7.95965 8.07592 8.13244 8.36912 8.45421 8.98043 9.09113 9.61128 11.09989 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.004740 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.140600 B = 5905.767295 C = 7541.123840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.104 4.104 5 C 0.060 3.940 6 N -0.526 5.526 7 C 0.179 3.821 8 C -0.549 4.549 9 H 0.054 0.946 10 C 0.066 3.934 11 N -0.885 5.885 12 Si 0.883 3.117 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.285 1.285 16 C 0.045 3.955 17 C 0.520 3.480 18 O -0.513 6.513 19 N -0.742 5.742 20 C 0.154 3.846 21 C -0.165 4.165 22 C -0.179 4.179 23 C -0.174 4.174 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.395 0.605 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -8.636 -9.432 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.068 4.068 6 N -0.250 5.250 7 C 0.053 3.947 8 C -0.588 4.588 9 H 0.072 0.928 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.711 3.289 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.086 4.086 17 C 0.307 3.693 18 O -0.386 6.386 19 N -0.397 5.397 20 C 0.030 3.970 21 C -0.184 4.184 22 C -0.216 4.216 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.309 -9.211 -8.544 13.282 hybrid contribution 1.633 1.834 -0.282 2.471 sum 5.942 -7.377 -8.826 12.947 Atomic orbital electron populations 1.21821 0.95861 1.01280 1.01218 1.21082 0.95118 0.96424 0.98642 1.21869 1.01555 0.96000 1.00994 1.21537 0.95543 1.00053 0.97106 1.22008 0.95190 0.97192 0.92441 1.62324 1.17081 1.40899 1.04708 1.19982 0.96693 0.91089 0.86908 1.21773 1.28281 1.11146 0.97627 0.92807 1.24930 0.95712 0.97556 0.95423 1.69978 1.42071 1.38165 1.02141 0.86698 0.80860 0.83481 0.77901 1.19939 1.20957 1.21092 1.21741 0.94254 0.96955 0.95680 1.20754 0.80747 0.81183 0.86637 1.90665 1.49496 1.60667 1.37791 1.45970 1.16050 1.45838 1.31800 1.20743 0.92007 0.92143 0.92120 1.22484 0.97609 0.93503 1.04755 1.23072 1.03482 0.96114 0.98899 1.22941 1.01349 1.03593 0.93218 0.92708 0.93413 0.92994 0.91985 0.92290 0.93784 0.92515 0.92157 0.91346 0.93265 0.93571 0.95493 0.92366 0.92997 0.91070 0.90474 0.77188 0.91332 0.91816 0.87292 0.88580 0.88862 0.88647 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.09 -1.35 2.92 -90.62 -0.26 -1.62 16 3 C -0.15 -2.15 8.95 37.15 0.33 -1.81 16 4 C -0.10 -1.85 4.66 -26.73 -0.12 -1.98 16 5 C 0.06 1.14 4.46 -3.82 -0.02 1.12 16 6 N -0.53 -11.59 4.40 -237.52 -1.04 -12.63 16 7 C 0.18 4.78 4.64 -4.98 -0.02 4.75 16 8 C -0.55 -15.06 7.32 -34.44 -0.25 -15.31 16 9 H 0.05 1.43 5.97 -52.49 -0.31 1.12 16 10 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 11 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 12 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C 0.05 0.87 5.23 -4.98 -0.03 0.84 16 17 C 0.52 10.37 7.55 -10.99 -0.08 10.29 16 18 O -0.51 -12.58 14.31 5.55 0.08 -12.50 16 19 N -0.74 -11.22 5.56 -60.30 -0.33 -11.55 16 20 C 0.15 2.14 5.96 -4.04 -0.02 2.12 16 21 C -0.17 -1.71 5.85 -90.63 -0.53 -2.24 16 22 C -0.18 -1.59 10.18 -26.74 -0.27 -1.86 16 23 C -0.17 -1.59 10.25 -26.74 -0.27 -1.86 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.91 6.67 -51.92 -0.35 0.56 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.39 6.91 -51.93 -0.36 1.03 16 33 H 0.05 1.02 4.98 -51.93 -0.26 0.76 16 34 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 35 H 0.03 0.78 6.70 -51.93 -0.35 0.43 16 36 H 0.06 1.78 5.87 -51.93 -0.31 1.47 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.07 1.42 6.42 -51.93 -0.33 1.09 16 39 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 40 H 0.39 4.68 8.40 -40.82 -0.34 4.34 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 43 H 0.11 1.04 8.04 -51.93 -0.42 0.62 16 44 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -32.61 370.41 -9.76 -42.37 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.45 Total: 5.59 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.31 Total: -7.27 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.64 Total: -50.23 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.61 -9.76 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072691182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.108 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds