Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46744 * 2 1 4 4 C 1.52998 * 109.47001 * 120.00583 * 2 1 3 5 5 C 1.53001 * 109.46892 * 175.00212 * 4 2 1 6 6 N 1.46899 * 109.47107 * 184.61431 * 5 4 2 7 7 C 1.46895 * 111.00118 * 287.30157 * 6 5 4 8 8 C 1.50699 * 109.46879 * 296.37878 * 7 6 5 9 9 H 1.07997 * 120.00243 * 5.24584 * 8 7 6 10 10 C 1.37887 * 119.99878 * 185.24755 * 8 7 6 11 11 N 1.31512 * 119.99540 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47284 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47164 * 120.00088 * 12 10 8 15 15 H 1.48509 * 109.46975 * 239.99775 * 12 10 8 16 16 C 1.46904 * 111.00082 * 163.34382 * 6 5 4 17 17 C 1.50690 * 109.47376 * 190.00315 * 16 6 5 18 18 O 1.21285 * 119.99995 * 359.97438 * 17 16 6 19 19 N 1.34778 * 120.00111 * 180.02562 * 17 16 6 20 20 C 1.46501 * 119.99956 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47192 * 180.02562 * 20 19 17 22 22 C 1.52992 * 117.49876 * 243.62291 * 21 20 19 23 23 C 1.52994 * 117.49893 * 174.99934 * 21 20 19 24 24 H 1.09002 * 109.47555 * 299.99645 * 1 2 3 25 25 H 1.08997 * 109.47249 * 59.99709 * 1 2 3 26 26 H 1.08999 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46849 * 240.00593 * 2 1 3 28 28 H 1.09009 * 109.46882 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47485 * 300.00147 * 3 2 1 30 30 H 1.09008 * 109.47336 * 60.00610 * 3 2 1 31 31 H 1.08995 * 109.47796 * 55.00081 * 4 2 1 32 32 H 1.09001 * 109.46836 * 294.99436 * 4 2 1 33 33 H 1.09001 * 109.47294 * 64.61571 * 5 4 2 34 34 H 1.08998 * 109.47086 * 304.61770 * 5 4 2 35 35 H 1.09001 * 109.47138 * 56.38273 * 7 6 5 36 36 H 1.09005 * 109.47223 * 176.38542 * 7 6 5 37 37 H 0.97004 * 119.99959 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.46875 * 70.00049 * 16 6 5 39 39 H 1.08999 * 109.47003 * 310.00253 * 16 6 5 40 40 H 0.96993 * 120.00158 * 0.02562 * 19 17 16 41 41 H 1.08999 * 109.47179 * 299.99922 * 20 19 17 42 42 H 1.08997 * 109.47316 * 60.00096 * 20 19 17 43 43 H 1.09000 * 115.54991 * 29.33185 * 21 20 19 44 44 H 1.08999 * 117.50380 * 359.97438 * 22 21 20 45 45 H 1.09003 * 117.49891 * 145.02189 * 22 21 20 46 46 H 1.09002 * 117.49763 * 214.97759 * 23 21 20 47 47 H 1.08996 * 117.50005 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0453 -1.6193 2.3306 7 6 3.9409 -0.8533 3.5796 8 6 4.8419 0.3524 3.5062 9 1 5.3679 0.5786 2.5905 10 6 4.9949 1.1669 4.6083 11 7 4.3548 0.8911 5.7235 12 14 6.1111 2.6618 4.5171 13 1 6.7111 2.7497 3.1616 14 1 5.3191 3.8883 4.7888 15 1 7.1910 2.5357 5.5287 16 6 5.4223 -2.0812 2.1097 17 6 5.7940 -3.0801 3.1750 18 8 4.9911 -3.3777 4.0339 19 7 7.0190 -3.6421 3.1738 20 6 7.3806 -4.6129 4.2097 21 6 8.8151 -5.0931 3.9804 22 6 9.0211 -6.5742 3.6574 23 6 9.4234 -6.0271 5.0284 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6765 1.9563 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6054 -1.7199 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 4.0027 0.1664 1.2248 34 1 3.8567 -1.3219 0.2594 35 1 2.9101 -0.5286 3.7216 36 1 4.2426 -1.4818 4.4176 37 1 4.4627 1.4638 6.4990 38 1 6.1025 -1.2308 2.1558 39 1 5.4948 -2.5517 1.1292 40 1 7.6615 -3.4033 2.4875 41 1 7.3078 -4.1421 5.1901 42 1 6.7006 -5.4635 4.1638 43 1 9.4798 -4.3755 3.4994 44 1 8.1347 -7.2068 3.6087 45 1 9.8214 -6.8315 2.9636 46 1 10.4884 -5.9243 5.2365 47 1 8.8019 -6.2992 5.8814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072691182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = -48.200469 kcal Electronic energy + Delta-G solvation = -22829.468590 eV Core-core repulsion = 19625.544345 eV Total energy + Delta-G solvation = -3203.924244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78929 -38.90063 -38.19036 -36.51464 -35.02515 -34.47970 -30.72161 -29.73786 -28.10654 -27.93248 -26.14381 -24.86692 -23.23800 -22.04870 -21.95045 -20.89882 -20.63772 -18.66854 -17.68227 -17.47158 -16.93690 -16.37699 -16.17826 -16.07460 -15.56405 -15.42359 -14.95357 -14.69924 -14.49337 -14.30972 -14.05183 -13.90943 -13.66144 -13.08295 -13.04168 -12.80623 -12.59142 -12.46642 -12.37662 -12.35653 -12.31673 -12.07936 -11.89742 -11.64583 -11.48929 -11.42324 -11.38047 -11.24479 -11.09771 -10.66875 -10.41828 -9.94208 -8.91334 -8.09686 -6.30574 1.34819 1.35439 1.47101 1.85144 2.22506 2.37312 2.90135 3.13925 3.45776 3.73132 3.97690 4.03271 4.04736 4.15115 4.16028 4.21349 4.28245 4.42916 4.51842 4.69365 4.70753 4.76622 4.81002 4.81813 4.83733 4.90185 4.92871 5.03208 5.06399 5.12406 5.21562 5.22434 5.26107 5.27327 5.38233 5.40064 5.47170 5.57613 5.60944 5.63131 5.88700 6.07202 6.27215 6.54919 6.77813 6.93663 7.39905 7.49280 8.92457 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.004740 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.140600 B = 5905.767295 C = 7541.123840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.100 4.100 5 C 0.062 3.938 6 N -0.537 5.537 7 C 0.201 3.799 8 C -0.547 4.547 9 H 0.065 0.935 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.956 3.044 13 H -0.257 1.257 14 H -0.281 1.281 15 H -0.283 1.283 16 C 0.046 3.954 17 C 0.512 3.488 18 O -0.570 6.570 19 N -0.720 5.720 20 C 0.154 3.846 21 C -0.173 4.173 22 C -0.165 4.165 23 C -0.173 4.173 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.033 0.967 34 H 0.083 0.917 35 H -0.009 1.009 36 H 0.015 0.985 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.414 0.586 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.330 -8.646 -12.519 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.138 4.138 5 C -0.066 4.066 6 N -0.260 5.260 7 C 0.074 3.926 8 C -0.586 4.586 9 H 0.083 0.917 10 C -0.192 4.192 11 N -0.571 5.571 12 Si 0.781 3.219 13 H -0.180 1.180 14 H -0.207 1.207 15 H -0.209 1.209 16 C -0.086 4.086 17 C 0.299 3.701 18 O -0.448 6.448 19 N -0.375 5.375 20 C 0.030 3.970 21 C -0.192 4.192 22 C -0.202 4.202 23 C -0.210 4.210 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.009 0.991 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.251 0.749 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.111 0.889 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.416 -9.232 -11.687 16.217 hybrid contribution 0.983 1.745 0.670 2.112 sum 7.399 -7.487 -11.017 15.237 Atomic orbital electron populations 1.21804 0.94599 1.01895 1.01687 1.21059 0.96186 0.95959 0.97396 1.21855 1.00941 0.96232 1.01243 1.21494 0.95079 0.99756 0.97447 1.22099 0.95636 0.96277 0.92548 1.62176 1.19377 1.40550 1.03927 1.19436 0.94307 0.90642 0.88169 1.22024 1.27755 1.10972 0.97871 0.91665 1.25880 0.97380 1.00970 0.94994 1.70146 1.44088 1.39759 1.03107 0.85539 0.78583 0.79138 0.78642 1.18013 1.20694 1.20872 1.21878 0.92273 0.96768 0.97646 1.21069 0.81553 0.81275 0.86161 1.90650 1.51563 1.62738 1.39852 1.45789 1.14847 1.44793 1.32075 1.20750 0.94571 0.91203 0.90444 1.22364 0.95275 0.94872 1.06665 1.23149 1.03866 0.94303 0.98889 1.23052 1.02143 1.02627 0.93205 0.94091 0.91092 0.92367 0.89641 0.93189 0.91092 0.94676 0.92394 0.95323 0.94878 0.89833 0.99077 0.96697 0.93008 0.91494 0.85824 0.74887 0.94186 0.92583 0.85832 0.88893 0.86765 0.86923 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.19 71.98 0.66 -2.76 16 2 C -0.09 -2.37 2.92 -10.80 -0.03 -2.40 16 3 C -0.15 -4.05 8.95 71.98 0.64 -3.41 16 4 C -0.10 -3.57 4.66 30.59 0.14 -3.42 16 5 C 0.06 2.31 4.46 86.30 0.38 2.69 16 6 N -0.54 -23.98 4.40 -905.39 -3.98 -27.96 16 7 C 0.20 11.33 4.64 85.56 0.40 11.73 16 8 C -0.55 -30.68 7.32 25.60 0.19 -30.49 16 9 H 0.07 3.44 5.97 -2.91 -0.02 3.43 16 10 C 0.01 0.37 5.46 84.66 0.46 0.83 16 11 N -0.93 -58.69 13.29 21.45 0.28 -58.41 16 12 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 13 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 16 C 0.05 1.70 5.23 85.55 0.45 2.15 16 17 C 0.51 20.68 7.55 87.65 0.66 21.34 16 18 O -0.57 -29.45 14.31 -3.05 -0.04 -29.50 16 19 N -0.72 -21.37 5.56 -463.06 -2.57 -23.94 16 20 C 0.15 4.34 5.96 86.38 0.51 4.85 16 21 C -0.17 -3.31 5.85 -10.80 -0.06 -3.38 16 22 C -0.17 -2.53 10.18 30.59 0.31 -2.22 16 23 C -0.17 -2.86 10.25 30.59 0.31 -2.55 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.46 6.67 -2.38 -0.02 1.45 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 1.23 6.91 -2.39 -0.02 1.21 16 33 H 0.03 1.35 4.98 -2.39 -0.01 1.34 16 34 H 0.08 2.50 7.79 -2.39 -0.02 2.48 16 35 H -0.01 -0.55 6.70 -2.39 -0.02 -0.57 16 36 H 0.01 0.97 5.87 -2.38 -0.01 0.96 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.07 2.58 6.42 -2.39 -0.02 2.57 16 39 H 0.12 3.43 7.85 -2.39 -0.02 3.41 16 40 H 0.41 8.95 8.40 -92.71 -0.78 8.17 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.66 7.88 -2.39 -0.02 1.64 16 43 H 0.12 2.02 8.04 -2.39 -0.02 2.01 16 44 H 0.09 1.50 8.03 -2.39 -0.02 1.48 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.70 370.41 0.90 -74.80 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.16 Total: 25.54 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.03 Total: -7.03 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -6.27 Total: -110.31 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.70 0.90 -74.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072691182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.597 kcal (2) G-P(sol) polarization free energy of solvation -75.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds