Wall clock time and date at job start Tue Mar 31 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47712 * 2 1 4 4 C 1.53006 * 109.46834 * 120.00346 * 2 1 3 5 5 C 1.53008 * 109.46748 * 174.99627 * 4 2 1 6 6 N 1.46906 * 109.46819 * 180.02562 * 5 4 2 7 7 C 1.46905 * 110.99911 * 66.04313 * 6 5 4 8 8 C 1.50695 * 109.46857 * 199.42845 * 7 6 5 9 9 H 1.08004 * 120.00273 * 355.23031 * 8 7 6 10 10 C 1.37877 * 119.99895 * 175.22384 * 8 7 6 11 11 N 1.31514 * 120.00220 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46822 * 90.00481 * 12 10 8 14 14 H 1.48500 * 109.47407 * 210.00198 * 12 10 8 15 15 H 1.48499 * 109.47284 * 330.00655 * 12 10 8 16 16 C 1.46898 * 110.99628 * 189.99908 * 6 5 4 17 17 C 1.50694 * 109.47135 * 75.97771 * 16 6 5 18 18 O 1.21280 * 120.00151 * 5.46356 * 17 16 6 19 19 N 1.34780 * 119.99876 * 185.46140 * 17 16 6 20 20 C 1.46490 * 120.00097 * 359.97438 * 19 17 16 21 21 C 1.46505 * 119.99618 * 179.97438 * 19 17 16 22 22 C 1.53001 * 117.49522 * 188.62183 * 21 19 17 23 23 C 1.53001 * 117.49270 * 120.00215 * 21 19 17 24 24 H 1.09001 * 109.46439 * 300.00262 * 1 2 3 25 25 H 1.09004 * 109.46895 * 59.99374 * 1 2 3 26 26 H 1.08990 * 109.47369 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46949 * 239.99750 * 2 1 3 28 28 H 1.09003 * 109.47118 * 59.99853 * 3 2 1 29 29 H 1.09004 * 109.47319 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47452 * 300.00286 * 3 2 1 31 31 H 1.08998 * 109.47256 * 54.99919 * 4 2 1 32 32 H 1.08991 * 109.47187 * 294.99574 * 4 2 1 33 33 H 1.08993 * 109.47215 * 59.99749 * 5 4 2 34 34 H 1.09001 * 109.47156 * 299.99778 * 5 4 2 35 35 H 1.08998 * 109.47073 * 319.43302 * 7 6 5 36 36 H 1.08998 * 109.46683 * 79.42912 * 7 6 5 37 37 H 0.96996 * 120.00489 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.46583 * 195.97319 * 16 6 5 39 39 H 1.08998 * 109.47186 * 315.97274 * 16 6 5 40 40 H 1.09003 * 109.47392 * 89.99982 * 20 19 17 41 41 H 1.08998 * 109.47462 * 209.99972 * 20 19 17 42 42 H 1.09003 * 109.47591 * 329.99986 * 20 19 17 43 43 H 1.09000 * 115.55446 * 334.33415 * 21 19 17 44 44 H 1.08997 * 117.49870 * 0.02562 * 22 21 19 45 45 H 1.09000 * 117.49873 * 145.02696 * 22 21 19 46 46 H 1.09000 * 117.49916 * 214.97368 * 23 21 19 47 47 H 1.09001 * 117.50099 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 3.5649 -0.8312 1.1879 6 7 4.0544 -1.5244 2.3871 7 6 3.6038 -2.9224 2.4079 8 6 3.6959 -3.4590 3.8131 9 1 4.1251 -2.8514 4.5961 10 6 3.2321 -4.7255 4.0992 11 7 2.7098 -5.4655 3.1457 12 14 3.3470 -5.3909 5.8409 13 1 2.1122 -5.0396 6.5874 14 1 3.4960 -6.8678 5.7978 15 1 4.5238 -4.7942 6.5222 16 6 5.5180 -1.4415 2.4823 17 6 5.9140 -0.0629 2.9442 18 8 5.0612 0.7370 3.2667 19 7 7.2160 0.2813 2.9991 20 6 8.2461 -0.6849 2.6102 21 6 7.6009 1.6219 3.4477 22 6 9.0701 2.0221 3.2980 23 6 8.4961 1.7229 4.6844 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0275 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1302 1.4423 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6053 -1.7199 1.2951 32 1 1.7517 -0.1585 2.1369 33 1 3.9995 0.1672 1.1420 34 1 3.8532 -1.3942 0.3002 35 1 2.5704 -2.9762 2.0654 36 1 4.2362 -3.5178 1.7494 37 1 2.3838 -6.3566 3.3469 38 1 5.8780 -2.1815 3.1970 39 1 5.9574 -1.6372 1.5042 40 1 8.4530 -0.5863 1.5446 41 1 9.1573 -0.4924 3.1766 42 1 7.8945 -1.6951 2.8201 43 1 6.8501 2.3991 3.3050 44 1 9.7500 1.2882 2.8654 45 1 9.2861 3.0628 3.0566 46 1 8.3346 2.5668 5.3550 47 1 8.7982 0.7921 5.1644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072691891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:04 Heat of formation + Delta-G solvation = -11.744184 kcal Electronic energy + Delta-G solvation = -23207.170642 eV Core-core repulsion = 20004.827261 eV Total energy + Delta-G solvation = -3202.343381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.77516 -37.66413 -36.67972 -35.06753 -33.64475 -32.47022 -29.15018 -27.84731 -26.94044 -26.86652 -25.30960 -22.76936 -22.50532 -22.00583 -20.16207 -19.39156 -18.75169 -17.10691 -16.39495 -16.19954 -15.56052 -14.88149 -14.70896 -14.52591 -14.28844 -13.93109 -13.61220 -13.29469 -12.95582 -12.75388 -12.48216 -12.37184 -12.24102 -12.09098 -11.90794 -11.58690 -11.46302 -11.42405 -11.18502 -10.98515 -10.85178 -10.72817 -10.60108 -10.58412 -10.26883 -10.12456 -10.01854 -9.66161 -9.27058 -9.10808 -8.39433 -8.32102 -7.19863 -6.00957 -4.01896 3.02574 3.04931 3.33525 3.39650 3.43255 3.81653 4.43849 4.65107 4.79778 4.83982 4.88402 5.04673 5.19727 5.26022 5.30208 5.34539 5.38824 5.43564 5.48505 5.64757 5.75067 5.78384 5.85880 5.89763 5.92700 5.97220 5.99954 6.06233 6.13475 6.14164 6.16892 6.32173 6.44267 6.47474 6.58505 6.68912 6.86410 6.98776 7.20395 7.33756 7.57244 7.84685 8.12500 8.20221 8.54958 8.65980 9.06058 9.62235 11.09317 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.006375 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.503098 B = 4391.445174 C = 6936.719840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.108 4.108 5 C 0.062 3.938 6 N -0.518 5.518 7 C 0.190 3.810 8 C -0.505 4.505 9 H 0.062 0.938 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.896 3.104 13 H -0.280 1.280 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.050 3.950 17 C 0.518 3.482 18 O -0.513 6.513 19 N -0.603 5.603 20 C 0.076 3.924 21 C 0.089 3.911 22 C -0.190 4.190 23 C -0.196 4.196 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.044 0.956 36 H -0.012 1.012 37 H 0.261 0.739 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.270 11.996 -4.962 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.066 4.066 6 N -0.243 5.243 7 C 0.066 3.934 8 C -0.543 4.543 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.724 3.276 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.082 4.082 17 C 0.306 3.694 18 O -0.386 6.386 19 N -0.338 5.338 20 C -0.067 4.067 21 C -0.016 4.016 22 C -0.228 4.228 23 C -0.235 4.235 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.062 0.938 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.148 0.852 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.475 12.449 -4.420 15.695 hybrid contribution 0.592 -0.965 0.270 1.164 sum 9.067 11.483 -4.150 15.209 Atomic orbital electron populations 1.21810 0.95600 1.01673 1.01080 1.21102 0.95418 0.96129 0.98836 1.21853 1.01069 0.96235 1.00954 1.21618 0.95000 1.01010 0.96923 1.22076 0.95926 0.97940 0.90680 1.61740 1.06141 1.18881 1.37499 1.19860 0.96209 0.80294 0.97055 1.21180 1.39652 0.98917 0.94579 0.92014 1.24960 0.95407 0.96916 0.97180 1.69950 1.41415 1.10351 1.32145 0.86536 0.78574 0.77721 0.84799 1.20614 1.21380 1.19943 1.21882 0.92278 0.93352 1.00692 1.21176 0.80679 0.90421 0.77102 1.90644 1.49108 1.52202 1.46692 1.47464 1.06632 1.12320 1.67374 1.21797 0.91803 0.93181 0.99955 1.21519 0.93190 0.86884 1.00039 1.23357 0.96181 1.02664 1.00600 1.23374 1.04978 1.03579 0.91529 0.92770 0.93382 0.92651 0.91870 0.92707 0.92736 0.93632 0.91204 0.91254 0.91851 0.96686 0.93837 0.99384 0.92964 0.87130 0.93494 0.92681 0.91333 0.90262 0.85248 0.88339 0.88187 0.88295 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 2 C -0.10 -1.43 2.92 -90.62 -0.26 -1.69 16 3 C -0.14 -1.98 8.95 37.15 0.33 -1.64 16 4 C -0.11 -2.00 4.66 -26.72 -0.12 -2.12 16 5 C 0.06 1.20 4.36 -3.82 -0.02 1.19 16 6 N -0.52 -11.56 3.95 -237.51 -0.94 -12.50 16 7 C 0.19 4.90 4.59 -4.98 -0.02 4.88 16 8 C -0.50 -14.13 8.52 -34.44 -0.29 -14.43 16 9 H 0.06 1.75 7.75 -52.48 -0.41 1.35 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 12 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.05 0.95 3.77 -4.98 -0.02 0.93 16 17 C 0.52 9.50 7.23 -10.99 -0.08 9.42 16 18 O -0.51 -11.17 15.23 5.56 0.08 -11.09 16 19 N -0.60 -8.61 3.21 -173.94 -0.56 -9.17 16 20 C 0.08 0.81 9.39 59.84 0.56 1.38 16 21 C 0.09 1.12 6.21 -67.93 -0.42 0.70 16 22 C -0.19 -1.73 9.72 -26.73 -0.26 -1.99 16 23 C -0.20 -2.06 10.13 -26.73 -0.27 -2.33 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.78 6.56 -51.93 -0.34 0.44 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.43 6.25 -51.93 -0.32 1.10 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 1.21 5.33 -51.93 -0.28 0.93 16 34 H 0.02 0.29 8.12 -51.93 -0.42 -0.14 16 35 H 0.04 1.20 5.88 -51.93 -0.31 0.89 16 36 H -0.01 -0.31 8.00 -51.93 -0.42 -0.73 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.11 2.20 6.78 -51.93 -0.35 1.85 16 39 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.60 6.33 -51.93 -0.33 0.27 16 42 H 0.08 0.87 6.59 -51.93 -0.34 0.53 16 43 H 0.13 1.78 7.67 -51.93 -0.40 1.38 16 44 H 0.10 0.81 6.46 -51.93 -0.34 0.47 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.10 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -31.84 369.01 -9.21 -41.04 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.44 Total: 0.93 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.63 Total: -5.83 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.76 Total: -47.31 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.84 -9.21 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072691891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.300 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds