Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47712 * 2 1 4 4 C 1.53006 * 109.46834 * 120.00346 * 2 1 3 5 5 C 1.53008 * 109.46748 * 174.99627 * 4 2 1 6 6 N 1.46906 * 109.46819 * 180.02562 * 5 4 2 7 7 C 1.46905 * 110.99911 * 66.04313 * 6 5 4 8 8 C 1.50695 * 109.46857 * 199.42845 * 7 6 5 9 9 H 1.08004 * 120.00273 * 355.23031 * 8 7 6 10 10 C 1.37877 * 119.99895 * 175.22384 * 8 7 6 11 11 N 1.31514 * 120.00220 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46822 * 90.00481 * 12 10 8 14 14 H 1.48500 * 109.47407 * 210.00198 * 12 10 8 15 15 H 1.48499 * 109.47284 * 330.00655 * 12 10 8 16 16 C 1.46898 * 110.99628 * 189.99908 * 6 5 4 17 17 C 1.50694 * 109.47135 * 75.97771 * 16 6 5 18 18 O 1.21280 * 120.00151 * 5.46356 * 17 16 6 19 19 N 1.34780 * 119.99876 * 185.46140 * 17 16 6 20 20 C 1.46490 * 120.00097 * 359.97438 * 19 17 16 21 21 C 1.46505 * 119.99618 * 179.97438 * 19 17 16 22 22 C 1.53001 * 117.49522 * 188.62183 * 21 19 17 23 23 C 1.53001 * 117.49270 * 120.00215 * 21 19 17 24 24 H 1.09001 * 109.46439 * 300.00262 * 1 2 3 25 25 H 1.09004 * 109.46895 * 59.99374 * 1 2 3 26 26 H 1.08990 * 109.47369 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46949 * 239.99750 * 2 1 3 28 28 H 1.09003 * 109.47118 * 59.99853 * 3 2 1 29 29 H 1.09004 * 109.47319 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47452 * 300.00286 * 3 2 1 31 31 H 1.08998 * 109.47256 * 54.99919 * 4 2 1 32 32 H 1.08991 * 109.47187 * 294.99574 * 4 2 1 33 33 H 1.08993 * 109.47215 * 59.99749 * 5 4 2 34 34 H 1.09001 * 109.47156 * 299.99778 * 5 4 2 35 35 H 1.08998 * 109.47073 * 319.43302 * 7 6 5 36 36 H 1.08998 * 109.46683 * 79.42912 * 7 6 5 37 37 H 0.96996 * 120.00489 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.46583 * 195.97319 * 16 6 5 39 39 H 1.08998 * 109.47186 * 315.97274 * 16 6 5 40 40 H 1.09003 * 109.47392 * 89.99982 * 20 19 17 41 41 H 1.08998 * 109.47462 * 209.99972 * 20 19 17 42 42 H 1.09003 * 109.47591 * 329.99986 * 20 19 17 43 43 H 1.09000 * 115.55446 * 334.33415 * 21 19 17 44 44 H 1.08997 * 117.49870 * 0.02562 * 22 21 19 45 45 H 1.09000 * 117.49873 * 145.02696 * 22 21 19 46 46 H 1.09000 * 117.49916 * 214.97368 * 23 21 19 47 47 H 1.09001 * 117.50099 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 3.5649 -0.8312 1.1879 6 7 4.0544 -1.5244 2.3871 7 6 3.6038 -2.9224 2.4079 8 6 3.6959 -3.4590 3.8131 9 1 4.1251 -2.8514 4.5961 10 6 3.2321 -4.7255 4.0992 11 7 2.7098 -5.4655 3.1457 12 14 3.3470 -5.3909 5.8409 13 1 2.1122 -5.0396 6.5874 14 1 3.4960 -6.8678 5.7978 15 1 4.5238 -4.7942 6.5222 16 6 5.5180 -1.4415 2.4823 17 6 5.9140 -0.0629 2.9442 18 8 5.0612 0.7370 3.2667 19 7 7.2160 0.2813 2.9991 20 6 8.2461 -0.6849 2.6102 21 6 7.6009 1.6219 3.4477 22 6 9.0701 2.0221 3.2980 23 6 8.4961 1.7229 4.6844 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0275 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1302 1.4423 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6053 -1.7199 1.2951 32 1 1.7517 -0.1585 2.1369 33 1 3.9995 0.1672 1.1420 34 1 3.8532 -1.3942 0.3002 35 1 2.5704 -2.9762 2.0654 36 1 4.2362 -3.5178 1.7494 37 1 2.3838 -6.3566 3.3469 38 1 5.8780 -2.1815 3.1970 39 1 5.9574 -1.6372 1.5042 40 1 8.4530 -0.5863 1.5446 41 1 9.1573 -0.4924 3.1766 42 1 7.8945 -1.6951 2.8201 43 1 6.8501 2.3991 3.3050 44 1 9.7500 1.2882 2.8654 45 1 9.2861 3.0628 3.0566 46 1 8.3346 2.5668 5.3550 47 1 8.7982 0.7921 5.1644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072691891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -31.008947 kcal Electronic energy + Delta-G solvation = -23208.006025 eV Core-core repulsion = 20004.827261 eV Total energy + Delta-G solvation = -3203.178764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08528 -39.03647 -37.95725 -36.59185 -34.80682 -34.53764 -30.62028 -29.76805 -28.00756 -27.92332 -26.99532 -24.63615 -23.40016 -23.12974 -21.66205 -20.78338 -19.98545 -18.64374 -18.26152 -17.42257 -16.96563 -16.50148 -16.28973 -15.94042 -15.49174 -15.31022 -15.06460 -14.64079 -14.35474 -14.13684 -13.93272 -13.67909 -13.47723 -13.27157 -13.24126 -13.06822 -13.00494 -12.74837 -12.63249 -12.43902 -12.32097 -12.20687 -12.01083 -11.88246 -11.51194 -11.47861 -11.45871 -11.30835 -11.24411 -10.72063 -10.52795 -9.42188 -8.97402 -8.18314 -6.27756 1.39781 1.42046 1.52191 1.63459 1.88925 2.40758 2.94398 3.12026 3.25375 3.67712 3.79916 3.97257 4.00201 4.06377 4.07061 4.13414 4.21600 4.28122 4.42538 4.49936 4.58653 4.63564 4.65032 4.74305 4.79033 4.83329 4.85020 4.89702 4.97281 5.04277 5.07744 5.09374 5.15736 5.20703 5.22977 5.28173 5.32469 5.50085 5.54134 5.64055 5.68075 6.08928 6.21981 6.46276 6.61521 6.86246 7.27264 7.41179 8.91572 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.006375 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.503098 B = 4391.445174 C = 6936.719840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.102 4.102 5 C 0.068 3.932 6 N -0.537 5.537 7 C 0.209 3.791 8 C -0.521 4.521 9 H 0.052 0.948 10 C 0.009 3.991 11 N -0.930 5.930 12 Si 0.962 3.038 13 H -0.278 1.278 14 H -0.278 1.278 15 H -0.267 1.267 16 C 0.051 3.949 17 C 0.517 3.483 18 O -0.559 6.559 19 N -0.593 5.593 20 C 0.067 3.933 21 C 0.049 3.951 22 C -0.154 4.154 23 C -0.193 4.193 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.019 0.981 36 H -0.029 1.029 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 12.907 -5.166 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.195 4.195 4 C -0.139 4.139 5 C -0.060 4.060 6 N -0.262 5.262 7 C 0.083 3.917 8 C -0.559 4.559 9 H 0.070 0.930 10 C -0.190 4.190 11 N -0.570 5.570 12 Si 0.787 3.213 13 H -0.204 1.204 14 H -0.203 1.203 15 H -0.191 1.191 16 C -0.080 4.080 17 C 0.305 3.695 18 O -0.436 6.436 19 N -0.326 5.326 20 C -0.075 4.075 21 C -0.055 4.055 22 C -0.192 4.192 23 C -0.232 4.232 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.037 0.963 36 H -0.012 1.012 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.125 0.875 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.427 13.373 -4.633 17.579 hybrid contribution 0.083 -1.210 0.314 1.253 sum 10.510 12.164 -4.319 16.645 Atomic orbital electron populations 1.21791 0.94313 1.01572 1.02233 1.21079 0.96516 0.96578 0.96855 1.21798 1.00542 0.95297 1.01911 1.21551 0.94511 0.99646 0.98238 1.22076 0.96371 0.97769 0.89764 1.61633 1.08489 1.16732 1.39303 1.19475 0.94514 0.82092 0.95610 1.21395 1.39895 0.99317 0.95290 0.92985 1.25775 0.94810 0.97069 1.01313 1.70057 1.41961 1.10761 1.34217 0.85497 0.78681 0.77401 0.79712 1.20411 1.20292 1.19116 1.21852 0.90448 0.94114 1.01568 1.20914 0.81956 0.89510 0.77072 1.90617 1.50766 1.53130 1.49103 1.47406 1.05777 1.13617 1.65845 1.22076 0.91649 0.92031 1.01696 1.21653 0.95062 0.85598 1.03174 1.23472 0.92962 1.04206 0.98523 1.23432 1.03868 1.03956 0.91944 0.93046 0.90769 0.93427 0.91102 0.93437 0.93484 0.90938 0.93866 0.93308 0.91226 0.96103 0.96280 1.01178 0.92645 0.88326 0.91287 0.90645 0.88651 0.90864 0.87188 0.86624 0.86219 0.87489 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.19 71.98 0.66 -3.06 16 2 C -0.09 -2.70 2.92 -10.79 -0.03 -2.73 16 3 C -0.14 -3.66 8.95 71.98 0.64 -3.02 16 4 C -0.10 -3.94 4.66 30.60 0.14 -3.80 16 5 C 0.07 2.72 4.36 86.30 0.38 3.10 16 6 N -0.54 -24.94 3.95 -905.36 -3.58 -28.51 16 7 C 0.21 11.24 4.59 85.55 0.39 11.63 16 8 C -0.52 -30.06 8.52 25.60 0.22 -29.85 16 9 H 0.05 3.05 7.75 -2.91 -0.02 3.02 16 10 C 0.01 0.50 5.46 84.65 0.46 0.96 16 11 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 12 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 C 0.05 2.01 3.77 85.56 0.32 2.34 16 17 C 0.52 19.27 7.23 87.65 0.63 19.90 16 18 O -0.56 -25.15 15.23 -3.03 -0.05 -25.20 16 19 N -0.59 -16.42 3.21 -822.60 -2.64 -19.06 16 20 C 0.07 1.29 9.39 127.77 1.20 2.49 16 21 C 0.05 1.19 6.21 44.99 0.28 1.47 16 22 C -0.15 -2.28 9.72 30.60 0.30 -1.99 16 23 C -0.19 -3.66 10.13 30.60 0.31 -3.35 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.30 6.56 -2.38 -0.02 1.29 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.88 6.25 -2.39 -0.01 1.87 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.72 5.33 -2.39 -0.01 2.70 16 34 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 35 H 0.02 1.12 5.88 -2.39 -0.01 1.10 16 36 H -0.03 -1.65 8.00 -2.39 -0.02 -1.67 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.10 4.06 6.78 -2.39 -0.02 4.04 16 39 H 0.07 2.35 7.81 -2.39 -0.02 2.33 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.34 6.33 -2.39 -0.02 1.33 16 42 H 0.07 1.52 6.59 -2.39 -0.02 1.51 16 43 H 0.11 3.06 7.67 -2.39 -0.02 3.04 16 44 H 0.12 1.36 6.46 -2.39 -0.02 1.34 16 45 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 1.83 8.12 -2.39 -0.02 1.81 16 Total: -1.00 -71.18 369.01 2.87 -68.31 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.92 Total: 18.74 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 5.91 Total: -5.89 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -5.93 Total: -102.89 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.18 2.87 -68.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072691891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.301 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds