Wall clock time and date at job start Tue Mar 31 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47315 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99631 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00119 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99650 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47119 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.47348 * 180.02562 * 9 8 6 11 11 C 1.46894 * 111.00052 * 190.00416 * 10 9 8 12 12 C 1.50709 * 109.47267 * 71.30537 * 11 10 9 13 13 H 1.07997 * 119.99465 * 355.27019 * 12 11 10 14 14 C 1.37870 * 120.00000 * 175.27117 * 12 11 10 15 15 N 1.31514 * 120.00154 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00101 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46963 * 60.00092 * 16 14 12 18 18 H 1.48500 * 109.46978 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47006 * 300.00241 * 16 14 12 20 20 C 1.46900 * 110.99934 * 66.05107 * 10 9 8 21 21 C 1.52996 * 109.47112 * 191.46009 * 20 10 9 22 22 C 1.53003 * 117.49547 * 243.12967 * 21 20 10 23 23 C 1.53000 * 60.00112 * 252.51090 * 22 21 20 24 24 H 1.08997 * 109.46761 * 299.99469 * 1 2 3 25 25 H 1.08993 * 109.46967 * 59.99758 * 1 2 3 26 26 H 1.09007 * 109.46677 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47255 * 240.00614 * 2 1 3 28 28 H 1.08995 * 109.47478 * 120.00190 * 2 1 3 29 29 H 1.09000 * 109.46551 * 60.00183 * 3 2 1 30 30 H 1.08995 * 109.47096 * 300.00424 * 3 2 1 31 31 H 1.08993 * 109.47092 * 59.99823 * 4 3 2 32 32 H 1.09005 * 109.46992 * 300.00079 * 4 3 2 33 33 H 0.97002 * 120.00432 * 359.97438 * 5 4 3 34 34 H 1.09009 * 109.47052 * 60.00006 * 8 6 5 35 35 H 1.08995 * 109.47628 * 300.00404 * 8 6 5 36 36 H 1.09009 * 109.46822 * 60.00271 * 9 8 6 37 37 H 1.08995 * 109.47532 * 300.00869 * 9 8 6 38 38 H 1.09002 * 109.46991 * 191.30304 * 11 10 9 39 39 H 1.09001 * 109.47459 * 311.30161 * 11 10 9 40 40 H 0.97002 * 120.00323 * 179.97438 * 15 14 12 41 41 H 1.09005 * 109.46774 * 311.45553 * 20 10 9 42 42 H 1.09000 * 109.47139 * 71.45513 * 20 10 9 43 43 H 1.08995 * 115.55278 * 28.83511 * 21 20 10 44 44 H 1.08995 * 117.50195 * 359.97438 * 22 21 20 45 45 H 1.09004 * 117.49922 * 145.02395 * 22 21 20 46 46 H 1.09004 * 117.50117 * 252.51409 * 23 22 21 47 47 H 1.09002 * 117.50445 * 107.48868 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3834 3.0701 0.0001 7 8 6.1715 2.1483 0.0001 8 6 5.8856 4.4909 0.0001 9 6 7.4156 4.4910 0.0009 10 7 7.9053 5.8760 0.0016 11 6 9.3542 5.9222 -0.2359 12 6 9.6398 5.5620 -1.6712 13 1 8.8350 5.2487 -2.3196 14 6 10.9284 5.6324 -2.1563 15 7 11.9083 6.0144 -1.3667 16 14 11.2825 5.1851 -3.9351 17 1 10.5114 6.0813 -4.8337 18 1 12.7343 5.3421 -4.2053 19 1 10.8834 3.7759 -4.1800 20 6 7.5553 6.5575 1.2550 21 6 7.8209 8.0574 1.1114 22 6 8.8809 8.6776 2.0239 23 6 7.3980 8.9637 2.2692 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 3.4279 3.5611 0.0003 34 1 5.5222 5.0048 0.8902 35 1 5.5224 5.0048 -0.8898 36 1 7.7794 3.9771 -0.8889 37 1 7.7786 3.9772 0.8910 38 1 9.7236 6.9275 -0.0332 39 1 9.8533 5.2120 0.4232 40 1 12.8150 6.0636 -1.7079 41 1 6.5000 6.3948 1.4745 42 1 8.1614 6.1573 2.0677 43 1 7.7304 8.4562 0.1010 44 1 9.3886 8.0172 2.7268 45 1 9.4881 9.4847 1.6140 46 1 7.0296 9.9590 2.0206 47 1 6.9304 8.4915 3.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:00 Heat of formation + Delta-G solvation = -33.734452 kcal Electronic energy + Delta-G solvation = -22028.918208 eV Core-core repulsion = 18825.621257 eV Total energy + Delta-G solvation = -3203.296951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.60962 -37.79593 -36.39433 -35.43767 -33.78145 -32.59166 -30.82906 -28.90985 -27.59352 -25.37492 -23.84574 -22.53817 -21.91289 -21.61593 -20.78227 -20.00141 -19.37384 -16.93057 -16.30040 -16.16451 -15.93471 -15.49284 -15.04768 -14.59401 -14.32751 -14.03195 -13.87151 -13.77257 -13.38068 -12.96302 -12.75897 -12.63572 -12.30835 -11.95325 -11.77092 -11.51906 -11.46421 -11.42222 -11.17828 -11.01986 -10.97726 -10.79114 -10.64274 -10.47699 -10.43062 -9.90977 -9.84136 -9.57557 -9.30386 -9.09542 -9.04963 -8.33740 -7.22223 -5.93973 -3.94384 2.85732 3.21556 3.39960 3.43081 3.46723 4.22356 4.49569 4.50931 4.58280 4.67576 4.81596 5.04349 5.08923 5.22730 5.26714 5.31884 5.34913 5.40972 5.42815 5.44885 5.51181 5.57229 5.67144 5.74125 5.81685 5.90707 5.90740 5.94640 5.98369 6.02384 6.10476 6.25034 6.31162 6.43513 6.47612 6.55686 6.78366 6.87198 7.38396 7.43988 7.54913 7.88343 8.18024 8.26381 8.40211 8.62468 9.12219 9.68883 11.16756 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003570 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.690927 B = 7841.203708 C = 9683.448937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.740 5.740 6 C 0.513 3.487 7 O -0.535 6.535 8 C -0.137 4.137 9 C 0.079 3.921 10 N -0.535 5.535 11 C 0.194 3.806 12 C -0.504 4.504 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.082 3.918 21 C -0.128 4.128 22 C -0.178 4.178 23 C -0.190 4.190 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.399 0.601 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.042 0.958 39 H -0.014 1.014 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.023 0.977 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.754 -3.681 5.862 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.006 4.006 5 N -0.393 5.393 6 C 0.300 3.700 7 O -0.411 6.411 8 C -0.177 4.177 9 C -0.049 4.049 10 N -0.260 5.260 11 C 0.069 3.931 12 C -0.543 4.543 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.046 4.046 21 C -0.147 4.147 22 C -0.216 4.216 23 C -0.228 4.228 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.233 0.767 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.004 0.996 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.177 -4.088 5.474 21.302 hybrid contribution 0.402 -0.262 -0.260 0.546 sum -19.775 -4.350 5.213 20.908 Atomic orbital electron populations 1.21766 0.95584 1.01743 1.01859 1.21442 0.96006 0.96051 1.02582 1.21827 0.94388 0.97959 1.02725 1.21324 0.93403 0.83587 1.02325 1.46082 1.07475 1.08474 1.77290 1.20985 0.81660 0.92288 0.75078 1.90716 1.55185 1.46785 1.48408 1.21753 0.99489 0.92194 1.04292 1.21663 0.90456 0.90469 1.02335 1.62131 1.19359 1.13717 1.30757 1.19743 0.79765 0.97315 0.96269 1.21133 0.93003 1.44205 0.95920 0.92070 1.24959 0.96249 0.95607 0.97750 1.69950 1.00210 1.48173 1.35581 0.86604 0.76908 0.79022 0.85140 1.20244 1.21443 1.20278 1.21650 0.98992 0.91926 0.92064 1.22247 1.02531 0.94073 0.95845 1.22965 0.91347 1.03658 1.03584 1.22939 0.98389 1.00664 1.00781 0.92713 0.92676 0.92645 0.91611 0.91670 0.91351 0.91268 0.91643 0.91767 0.76722 0.89540 0.88203 0.89126 0.95544 0.93999 0.99587 0.93003 0.91924 0.95896 0.86988 0.89265 0.89128 0.89372 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.13 -0.90 5.33 -26.73 -0.14 -1.04 16 4 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 5 N -0.74 -8.09 5.56 -60.29 -0.33 -8.43 16 6 C 0.51 7.83 7.83 -10.98 -0.09 7.75 16 7 O -0.54 -10.63 15.98 5.56 0.09 -10.54 16 8 C -0.14 -2.03 5.65 -27.88 -0.16 -2.19 16 9 C 0.08 1.60 4.09 -3.82 -0.02 1.58 16 10 N -0.54 -11.43 4.45 -236.07 -1.05 -12.48 16 11 C 0.19 5.11 4.60 -4.97 -0.02 5.09 16 12 C -0.50 -14.44 8.52 -34.44 -0.29 -14.73 16 13 H 0.06 1.74 7.37 -52.49 -0.39 1.35 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 16 Si 0.90 22.25 29.54 -169.99 -5.02 17.22 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.08 1.46 5.11 -3.83 -0.02 1.44 16 21 C -0.13 -2.17 4.73 -90.62 -0.43 -2.60 16 22 C -0.18 -2.86 10.05 -26.73 -0.27 -3.13 16 23 C -0.19 -2.58 10.25 -26.73 -0.27 -2.86 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.40 3.13 8.47 -40.82 -0.35 2.78 16 34 H 0.09 1.09 6.34 -51.92 -0.33 0.76 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 2.10 6.92 -51.92 -0.36 1.74 16 37 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.04 1.16 6.87 -51.93 -0.36 0.81 16 39 H -0.01 -0.39 8.06 -51.93 -0.42 -0.81 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 0.95 6.04 -51.93 -0.31 0.63 16 42 H 0.02 0.43 7.84 -51.93 -0.41 0.02 16 43 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -32.87 379.59 -10.29 -43.16 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.81 Total: 1.28 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.62 Total: -9.46 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.65 Total: -47.39 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.87 -10.29 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.427 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds