Wall clock time and date at job start Tue Mar 31 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 C 1.53000 * 109.47315 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99631 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00119 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99650 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47119 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.47348 * 180.02562 * 9 8 6 11 11 C 1.46894 * 111.00052 * 190.00416 * 10 9 8 12 12 C 1.50709 * 109.47267 * 71.30537 * 11 10 9 13 13 H 1.07997 * 119.99465 * 355.27019 * 12 11 10 14 14 C 1.37870 * 120.00000 * 175.27117 * 12 11 10 15 15 N 1.31514 * 120.00154 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00101 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46963 * 60.00092 * 16 14 12 18 18 H 1.48500 * 109.46978 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47006 * 300.00241 * 16 14 12 20 20 C 1.46900 * 110.99934 * 66.05107 * 10 9 8 21 21 C 1.52996 * 109.47112 * 191.46009 * 20 10 9 22 22 C 1.53003 * 117.49547 * 243.12967 * 21 20 10 23 23 C 1.53000 * 60.00112 * 252.51090 * 22 21 20 24 24 H 1.08997 * 109.46761 * 299.99469 * 1 2 3 25 25 H 1.08993 * 109.46967 * 59.99758 * 1 2 3 26 26 H 1.09007 * 109.46677 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47255 * 240.00614 * 2 1 3 28 28 H 1.08995 * 109.47478 * 120.00190 * 2 1 3 29 29 H 1.09000 * 109.46551 * 60.00183 * 3 2 1 30 30 H 1.08995 * 109.47096 * 300.00424 * 3 2 1 31 31 H 1.08993 * 109.47092 * 59.99823 * 4 3 2 32 32 H 1.09005 * 109.46992 * 300.00079 * 4 3 2 33 33 H 0.97002 * 120.00432 * 359.97438 * 5 4 3 34 34 H 1.09009 * 109.47052 * 60.00006 * 8 6 5 35 35 H 1.08995 * 109.47628 * 300.00404 * 8 6 5 36 36 H 1.09009 * 109.46822 * 60.00271 * 9 8 6 37 37 H 1.08995 * 109.47532 * 300.00869 * 9 8 6 38 38 H 1.09002 * 109.46991 * 191.30304 * 11 10 9 39 39 H 1.09001 * 109.47459 * 311.30161 * 11 10 9 40 40 H 0.97002 * 120.00323 * 179.97438 * 15 14 12 41 41 H 1.09005 * 109.46774 * 311.45553 * 20 10 9 42 42 H 1.09000 * 109.47139 * 71.45513 * 20 10 9 43 43 H 1.08995 * 115.55278 * 28.83511 * 21 20 10 44 44 H 1.08995 * 117.50195 * 359.97438 * 22 21 20 45 45 H 1.09004 * 117.49922 * 145.02395 * 22 21 20 46 46 H 1.09004 * 117.50117 * 252.51409 * 23 22 21 47 47 H 1.09002 * 117.50445 * 107.48868 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3834 3.0701 0.0001 7 8 6.1715 2.1483 0.0001 8 6 5.8856 4.4909 0.0001 9 6 7.4156 4.4910 0.0009 10 7 7.9053 5.8760 0.0016 11 6 9.3542 5.9222 -0.2359 12 6 9.6398 5.5620 -1.6712 13 1 8.8350 5.2487 -2.3196 14 6 10.9284 5.6324 -2.1563 15 7 11.9083 6.0144 -1.3667 16 14 11.2825 5.1851 -3.9351 17 1 10.5114 6.0813 -4.8337 18 1 12.7343 5.3421 -4.2053 19 1 10.8834 3.7759 -4.1800 20 6 7.5553 6.5575 1.2550 21 6 7.8209 8.0574 1.1114 22 6 8.8809 8.6776 2.0239 23 6 7.3980 8.9637 2.2692 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 3.4279 3.5611 0.0003 34 1 5.5222 5.0048 0.8902 35 1 5.5224 5.0048 -0.8898 36 1 7.7794 3.9771 -0.8889 37 1 7.7786 3.9772 0.8910 38 1 9.7236 6.9275 -0.0332 39 1 9.8533 5.2120 0.4232 40 1 12.8150 6.0636 -1.7079 41 1 6.5000 6.3948 1.4745 42 1 8.1614 6.1573 2.0677 43 1 7.7304 8.4562 0.1010 44 1 9.3886 8.0172 2.7268 45 1 9.4881 9.4847 1.6140 46 1 7.0296 9.9590 2.0206 47 1 6.9304 8.4915 3.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:59 Heat of formation + Delta-G solvation = -55.613196 kcal Electronic energy + Delta-G solvation = -22029.866941 eV Core-core repulsion = 18825.621257 eV Total energy + Delta-G solvation = -3204.245684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84649 -39.26536 -37.27484 -36.86905 -34.76091 -34.63835 -32.25135 -29.81078 -29.43734 -26.91909 -25.20353 -23.87749 -23.12834 -22.37480 -22.20281 -21.20033 -20.84058 -18.60350 -18.00719 -17.18844 -17.03037 -16.72584 -16.47234 -16.15524 -15.77062 -15.40649 -15.07102 -14.57975 -14.53347 -14.38093 -14.22102 -13.82509 -13.78332 -13.26483 -13.18603 -12.84513 -12.67049 -12.47120 -12.41926 -12.33134 -12.24151 -12.08628 -11.98038 -11.95376 -11.78121 -11.49833 -11.38313 -11.05442 -10.88224 -10.65119 -10.53796 -10.09252 -9.05076 -8.18319 -6.27395 1.38864 1.42764 1.50118 1.64410 2.17875 2.40905 2.96840 3.13040 3.30498 3.86332 3.89706 3.94833 4.02236 4.07922 4.09140 4.20043 4.22640 4.38337 4.44923 4.53635 4.63024 4.65159 4.69600 4.77237 4.82565 4.85535 4.93463 4.95161 5.00590 5.06170 5.07803 5.08995 5.26171 5.27761 5.30535 5.36803 5.37116 5.45586 5.45867 5.50603 5.67527 6.09297 6.33599 6.57726 6.66238 6.87453 7.29092 7.41014 8.92345 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003570 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.690927 B = 7841.203708 C = 9683.448937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.119 4.119 4 C 0.115 3.885 5 N -0.716 5.716 6 C 0.512 3.488 7 O -0.591 6.591 8 C -0.121 4.121 9 C 0.084 3.916 10 N -0.533 5.533 11 C 0.211 3.789 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.083 3.917 21 C -0.153 4.153 22 C -0.200 4.200 23 C -0.144 4.144 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.419 0.581 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.051 0.949 37 H 0.007 0.993 38 H 0.023 0.977 39 H -0.054 1.054 40 H 0.263 0.737 41 H 0.101 0.899 42 H 0.010 0.990 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.859 -2.771 5.791 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.008 4.008 5 N -0.370 5.370 6 C 0.299 3.701 7 O -0.471 6.471 8 C -0.161 4.161 9 C -0.045 4.045 10 N -0.257 5.257 11 C 0.085 3.915 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.199 1.199 20 C -0.045 4.045 21 C -0.171 4.171 22 C -0.237 4.237 23 C -0.181 4.181 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.256 0.744 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.041 0.959 39 H -0.036 1.036 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.028 0.972 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.129 0.871 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.362 -3.151 5.410 24.187 hybrid contribution 1.342 -0.562 -0.181 1.466 sum -22.020 -3.713 5.229 22.935 Atomic orbital electron populations 1.21748 0.94606 1.02110 1.02286 1.21457 0.96804 0.95726 1.02290 1.21759 0.91491 0.98519 1.03902 1.21419 0.95697 0.82611 1.01115 1.45883 1.06272 1.09783 1.75028 1.21030 0.82678 0.91723 0.74632 1.90706 1.56896 1.48172 1.51338 1.21583 0.95086 0.92703 1.06731 1.21526 0.94344 0.89115 0.99516 1.62079 1.15826 1.14571 1.33251 1.19350 0.82779 0.94790 0.94594 1.21460 0.93324 1.44265 0.96955 0.92287 1.25876 0.96006 0.95339 1.02455 1.70079 1.00632 1.49031 1.37687 0.85509 0.77089 0.78863 0.79611 1.18853 1.20667 1.19934 1.21783 1.00844 0.92131 0.89710 1.22157 1.04815 0.93905 0.96244 1.23003 0.93161 1.03760 1.03776 1.23034 0.95447 1.00682 0.98984 0.92173 0.92326 0.92402 0.92120 0.91921 0.89941 0.90208 0.93182 0.92853 0.74383 0.86153 0.86419 0.93071 0.97506 0.95889 1.03593 0.92796 0.88085 0.97154 0.88774 0.90188 0.89535 0.87118 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.12 -1.40 5.93 30.60 0.18 -1.22 16 3 C -0.12 -1.34 5.33 30.59 0.16 -1.18 16 4 C 0.12 2.18 5.67 86.38 0.49 2.67 16 5 N -0.72 -14.16 5.56 -463.06 -2.57 -16.73 16 6 C 0.51 15.21 7.83 87.66 0.69 15.90 16 7 O -0.59 -24.12 15.98 -3.02 -0.05 -24.17 16 8 C -0.12 -3.40 5.65 29.85 0.17 -3.23 16 9 C 0.08 3.47 4.09 86.30 0.35 3.82 16 10 N -0.53 -23.27 4.45 -900.79 -4.00 -27.27 16 11 C 0.21 11.72 4.60 85.56 0.39 12.11 16 12 C -0.52 -30.98 8.52 25.60 0.22 -30.76 16 13 H 0.06 3.45 7.37 -2.91 -0.02 3.43 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.93 -58.27 13.29 21.44 0.28 -57.99 16 16 Si 0.96 46.34 29.54 68.60 2.03 48.37 16 17 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 C 0.08 2.90 5.11 86.30 0.44 3.34 16 21 C -0.15 -5.04 4.73 -10.79 -0.05 -5.09 16 22 C -0.20 -6.37 10.05 30.60 0.31 -6.06 16 23 C -0.14 -3.47 10.25 30.60 0.31 -3.16 16 24 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.42 5.04 8.47 -92.71 -0.79 4.25 16 34 H 0.12 2.57 6.34 -2.38 -0.02 2.56 16 35 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.05 2.50 6.92 -2.38 -0.02 2.48 16 37 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 38 H 0.02 1.35 6.87 -2.39 -0.02 1.33 16 39 H -0.05 -3.33 8.06 -2.39 -0.02 -3.34 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.10 2.72 6.04 -2.38 -0.01 2.71 16 42 H 0.01 0.39 7.84 -2.39 -0.02 0.37 16 43 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 45 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 46 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -75.95 379.59 0.66 -75.29 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.13 Total: 15.47 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 4.84 Total: -12.97 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -6.29 Total: -101.99 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.17 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.95 0.66 -75.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.678 kcal (2) G-P(sol) polarization free energy of solvation -75.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds