Wall clock time and date at job start Tue Mar 31 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 119.99775 * 2 1 4 4 C 1.52997 * 109.47294 * 124.99593 * 3 2 1 5 5 C 1.53002 * 109.47653 * 179.97438 * 4 3 2 6 6 N 1.46893 * 109.47377 * 184.17179 * 5 4 3 7 7 C 1.46905 * 111.00314 * 160.79990 * 6 5 4 8 8 C 1.50706 * 109.46951 * 288.23917 * 7 6 5 9 9 H 1.07998 * 119.99603 * 356.11297 * 8 7 6 10 10 C 1.37875 * 119.99869 * 176.11353 * 8 7 6 11 11 N 1.31511 * 119.99890 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99892 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46753 * 90.00530 * 12 10 8 14 14 H 1.48504 * 109.46939 * 209.99884 * 12 10 8 15 15 H 1.48501 * 109.47432 * 330.00334 * 12 10 8 16 16 C 1.46902 * 111.00058 * 284.75343 * 6 5 4 17 17 C 1.53002 * 109.47229 * 170.00003 * 16 6 5 18 18 N 1.46905 * 109.46966 * 179.97438 * 17 16 6 19 19 C 1.47021 * 110.99442 * 46.32172 * 18 17 16 20 20 C 1.53095 * 109.25066 * 182.34964 * 19 18 17 21 21 O 1.43020 * 109.29447 * 303.21655 * 20 19 18 22 22 C 1.43013 * 113.73827 * 58.64973 * 21 20 19 23 23 C 1.47010 * 110.99708 * 170.00212 * 18 17 16 24 24 H 1.08007 * 120.00153 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00249 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99696 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47782 * 4.99467 * 3 2 1 28 28 H 1.09003 * 109.47038 * 244.99465 * 3 2 1 29 29 H 1.09003 * 109.47078 * 59.99750 * 4 3 2 30 30 H 1.08998 * 109.47362 * 299.99658 * 4 3 2 31 31 H 1.08998 * 109.47134 * 64.16943 * 5 4 3 32 32 H 1.09003 * 109.46447 * 304.16900 * 5 4 3 33 33 H 1.09001 * 109.46826 * 48.23292 * 7 6 5 34 34 H 1.09001 * 109.47480 * 168.23616 * 7 6 5 35 35 H 0.97001 * 119.99864 * 179.97438 * 11 10 8 36 36 H 1.08995 * 109.46962 * 50.00190 * 16 6 5 37 37 H 1.08996 * 109.47166 * 290.00098 * 16 6 5 38 38 H 1.09004 * 109.47068 * 60.00175 * 17 16 6 39 39 H 1.08996 * 109.47124 * 300.00120 * 17 16 6 40 40 H 1.09005 * 109.47247 * 62.43613 * 19 18 17 41 41 H 1.08997 * 109.54444 * 302.30438 * 19 18 17 42 42 H 1.09002 * 109.50642 * 183.26470 * 20 19 18 43 43 H 1.09000 * 109.51058 * 63.17486 * 20 19 18 44 44 H 1.08999 * 109.50664 * 61.26477 * 22 21 20 45 45 H 1.09001 * 109.50826 * 181.35177 * 22 21 20 46 46 H 1.09000 * 109.50940 * 57.67337 * 23 18 17 47 47 H 1.09003 * 109.50660 * 297.54389 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8004 2.6580 1.1814 6 7 4.8027 2.6446 2.2551 7 6 5.8395 3.6585 2.0201 8 6 6.7166 3.2237 0.8743 9 1 6.5627 2.2599 0.4120 10 6 7.7155 4.0565 0.4164 11 7 8.4813 3.6769 -0.5832 12 14 7.9812 5.7238 1.2157 13 1 8.9488 5.5880 2.3340 14 1 8.5179 6.6751 0.2096 15 1 6.6883 6.2336 1.7389 16 6 4.1705 2.8326 3.5678 17 6 5.1967 2.5663 4.6709 18 7 4.5647 2.7548 5.9835 19 6 3.2583 2.0828 6.0405 20 6 2.6104 2.3533 7.4010 21 8 3.4912 1.9155 8.4393 22 6 4.7722 2.5510 8.4136 23 6 5.4425 2.2817 7.0637 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.7399 0.5066 1.0922 30 1 2.4771 1.2358 2.1130 31 1 3.1037 3.4801 1.3448 32 1 4.2986 2.7893 0.2208 33 1 5.3681 4.6104 1.7759 34 1 6.4458 3.7732 2.9187 35 1 9.1838 4.2629 -0.9056 36 1 3.3366 2.1386 3.6721 37 1 3.8043 3.8558 3.6515 38 1 6.0307 3.2603 4.5665 39 1 5.5629 1.5431 4.5871 40 1 3.3958 1.0094 5.9098 41 1 2.6156 2.4672 5.2485 42 1 1.6681 1.8098 7.4700 43 1 2.4231 3.4217 7.5091 44 1 4.6484 3.6252 8.5505 45 1 5.3931 2.1510 9.2152 46 1 6.3941 2.8113 7.0178 47 1 5.6150 1.2114 6.9501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081515510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:10 Heat of formation + Delta-G solvation = -18.705387 kcal Electronic energy + Delta-G solvation = -22863.327409 eV Core-core repulsion = 19660.682168 eV Total energy + Delta-G solvation = -3202.645242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66051 -37.66675 -35.90920 -35.00283 -32.54685 -31.40132 -31.12380 -29.46795 -27.65037 -26.11322 -24.36347 -23.93737 -22.09630 -21.22829 -20.35018 -19.80703 -19.38274 -16.96914 -16.61306 -16.17648 -15.59330 -15.24800 -15.14090 -14.99694 -14.71440 -14.42603 -14.08524 -13.75193 -13.55327 -13.38677 -12.82862 -12.46760 -12.43081 -12.27900 -11.94921 -11.85129 -11.48256 -11.41536 -11.28792 -10.96916 -10.86757 -10.74736 -10.55556 -10.47478 -10.27616 -9.93233 -9.75979 -9.72299 -9.31596 -9.22872 -8.57514 -8.32141 -7.40640 -6.06251 -4.03156 2.32688 3.26842 3.34751 3.37036 3.66917 3.83806 4.40738 4.67011 4.82506 4.93020 4.97284 5.03874 5.07298 5.17587 5.20238 5.25157 5.37270 5.44577 5.46950 5.52531 5.55306 5.64011 5.72971 5.74480 5.78802 5.86326 5.89442 5.93394 5.98187 6.16666 6.25904 6.27675 6.35640 6.54843 6.64905 6.71973 6.83510 6.87841 6.95433 6.96796 7.03876 7.06322 7.61333 7.89116 8.02849 8.65307 9.04022 9.55995 11.06897 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.005904 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.174105 B = 4741.786245 C = 7714.729411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C -0.097 4.097 4 C -0.106 4.106 5 C 0.063 3.937 6 N -0.527 5.527 7 C 0.158 3.842 8 C -0.507 4.507 9 H 0.081 0.919 10 C 0.069 3.931 11 N -0.900 5.900 12 Si 0.871 3.129 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.053 3.947 17 C 0.058 3.942 18 N -0.538 5.538 19 C 0.012 3.988 20 C 0.064 3.936 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.018 3.982 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.019 0.981 32 H 0.090 0.910 33 H -0.010 1.010 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 -3.394 11.856 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.157 4.157 3 C -0.134 4.134 4 C -0.144 4.144 5 C -0.065 4.065 6 N -0.251 5.251 7 C 0.032 3.968 8 C -0.545 4.545 9 H 0.099 0.901 10 C -0.133 4.133 11 N -0.539 5.539 12 Si 0.698 3.302 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.076 4.076 17 C -0.069 4.069 18 N -0.264 5.264 19 C -0.116 4.116 20 C -0.013 4.013 21 O -0.308 6.308 22 C -0.012 4.012 23 C -0.111 4.111 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.108 0.892 33 H 0.008 0.992 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.692 -3.416 11.942 17.759 hybrid contribution 0.175 1.032 -0.050 1.047 sum -12.517 -2.384 11.892 17.430 Atomic orbital electron populations 1.23777 0.96001 1.01403 1.03508 1.23063 0.95916 0.98937 0.97832 1.20780 0.98191 0.94625 0.99835 1.21506 0.97068 0.99259 0.96572 1.22019 0.92782 0.94673 0.97036 1.61881 1.12373 1.51276 0.99593 1.20274 0.90192 0.88811 0.97513 1.21036 1.13987 1.04776 1.14691 0.90111 1.24892 0.95715 0.97849 0.94815 1.69892 1.20394 1.37229 1.26425 0.86926 0.78868 0.84860 0.79516 1.20170 1.21212 1.19209 1.22156 0.96051 0.99066 0.90307 1.22199 0.97528 1.01104 0.86077 1.62292 1.03343 1.56950 1.03820 1.22867 0.92456 0.97609 0.98679 1.22682 0.92703 0.99921 0.86016 1.87955 1.25021 1.66153 1.51625 1.22657 0.84387 0.97787 0.96389 1.22764 0.97176 0.99247 0.91871 0.88941 0.88852 0.87505 0.91962 0.90541 0.91052 0.93073 0.96295 0.89202 0.99212 0.95629 0.92699 0.91586 0.95227 0.89843 0.93670 0.93913 0.89157 0.88696 0.92417 0.92371 0.88621 0.89536 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.22 14.32 29.01 0.42 -1.80 16 2 C -0.14 -1.65 9.52 -36.03 -0.34 -1.99 16 3 C -0.10 -1.27 5.66 -27.89 -0.16 -1.42 16 4 C -0.11 -1.60 5.24 -26.73 -0.14 -1.74 16 5 C 0.06 1.15 4.82 -3.83 -0.02 1.13 16 6 N -0.53 -10.60 4.39 -236.07 -1.04 -11.63 16 7 C 0.16 3.74 3.68 -4.97 -0.02 3.72 16 8 C -0.51 -14.09 8.85 -34.44 -0.30 -14.40 16 9 H 0.08 2.46 8.02 -52.49 -0.42 2.04 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 12 Si 0.87 21.30 27.55 -169.99 -4.68 16.62 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.27 -6.35 6.43 56.52 0.36 -5.98 16 16 C 0.05 0.89 4.06 -3.82 -0.02 0.87 16 17 C 0.06 0.94 5.24 -3.82 -0.02 0.92 16 18 N -0.54 -7.46 4.87 -234.30 -1.14 -8.60 16 19 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 20 C 0.06 0.69 7.01 37.21 0.26 0.95 16 21 O -0.39 -4.79 10.83 -35.23 -0.38 -5.17 16 22 C 0.06 0.69 7.01 37.21 0.26 0.96 16 23 C 0.02 0.22 5.63 -3.71 -0.02 0.20 16 24 H 0.09 0.85 8.06 -52.48 -0.42 0.42 16 25 H 0.09 0.93 7.84 -52.48 -0.41 0.52 16 26 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 27 H 0.06 0.77 7.79 -51.93 -0.40 0.37 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.72 6.90 -51.93 -0.36 0.37 16 31 H 0.02 0.33 8.01 -51.93 -0.42 -0.09 16 32 H 0.09 1.87 7.09 -51.93 -0.37 1.50 16 33 H -0.01 -0.24 6.84 -51.93 -0.36 -0.60 16 34 H 0.03 0.61 5.57 -51.93 -0.29 0.32 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 0.99 4.80 -51.93 -0.25 0.74 16 37 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.08 1.49 6.29 -51.93 -0.33 1.16 16 39 H 0.04 0.76 8.08 -51.93 -0.42 0.35 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.06 6.05 -51.93 -0.31 0.74 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -30.19 362.78 -9.80 -39.98 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.58 Total: 0.45 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.22 Total: -10.61 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -1.40 Total: -46.75 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.68 Total: 16.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.19 -9.80 -39.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.278 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds