Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 119.99775 * 2 1 4 4 C 1.52997 * 109.47294 * 124.99593 * 3 2 1 5 5 C 1.53002 * 109.47653 * 179.97438 * 4 3 2 6 6 N 1.46893 * 109.47377 * 184.17179 * 5 4 3 7 7 C 1.46905 * 111.00314 * 160.79990 * 6 5 4 8 8 C 1.50706 * 109.46951 * 288.23917 * 7 6 5 9 9 H 1.07998 * 119.99603 * 356.11297 * 8 7 6 10 10 C 1.37875 * 119.99869 * 176.11353 * 8 7 6 11 11 N 1.31511 * 119.99890 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99892 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46753 * 90.00530 * 12 10 8 14 14 H 1.48504 * 109.46939 * 209.99884 * 12 10 8 15 15 H 1.48501 * 109.47432 * 330.00334 * 12 10 8 16 16 C 1.46902 * 111.00058 * 284.75343 * 6 5 4 17 17 C 1.53002 * 109.47229 * 170.00003 * 16 6 5 18 18 N 1.46905 * 109.46966 * 179.97438 * 17 16 6 19 19 C 1.47021 * 110.99442 * 46.32172 * 18 17 16 20 20 C 1.53095 * 109.25066 * 182.34964 * 19 18 17 21 21 O 1.43020 * 109.29447 * 303.21655 * 20 19 18 22 22 C 1.43013 * 113.73827 * 58.64973 * 21 20 19 23 23 C 1.47010 * 110.99708 * 170.00212 * 18 17 16 24 24 H 1.08007 * 120.00153 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00249 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99696 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47782 * 4.99467 * 3 2 1 28 28 H 1.09003 * 109.47038 * 244.99465 * 3 2 1 29 29 H 1.09003 * 109.47078 * 59.99750 * 4 3 2 30 30 H 1.08998 * 109.47362 * 299.99658 * 4 3 2 31 31 H 1.08998 * 109.47134 * 64.16943 * 5 4 3 32 32 H 1.09003 * 109.46447 * 304.16900 * 5 4 3 33 33 H 1.09001 * 109.46826 * 48.23292 * 7 6 5 34 34 H 1.09001 * 109.47480 * 168.23616 * 7 6 5 35 35 H 0.97001 * 119.99864 * 179.97438 * 11 10 8 36 36 H 1.08995 * 109.46962 * 50.00190 * 16 6 5 37 37 H 1.08996 * 109.47166 * 290.00098 * 16 6 5 38 38 H 1.09004 * 109.47068 * 60.00175 * 17 16 6 39 39 H 1.08996 * 109.47124 * 300.00120 * 17 16 6 40 40 H 1.09005 * 109.47247 * 62.43613 * 19 18 17 41 41 H 1.08997 * 109.54444 * 302.30438 * 19 18 17 42 42 H 1.09002 * 109.50642 * 183.26470 * 20 19 18 43 43 H 1.09000 * 109.51058 * 63.17486 * 20 19 18 44 44 H 1.08999 * 109.50664 * 61.26477 * 22 21 20 45 45 H 1.09001 * 109.50826 * 181.35177 * 22 21 20 46 46 H 1.09000 * 109.50940 * 57.67337 * 23 18 17 47 47 H 1.09003 * 109.50660 * 297.54389 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 3.8004 2.6580 1.1814 6 7 4.8027 2.6446 2.2551 7 6 5.8395 3.6585 2.0201 8 6 6.7166 3.2237 0.8743 9 1 6.5627 2.2599 0.4120 10 6 7.7155 4.0565 0.4164 11 7 8.4813 3.6769 -0.5832 12 14 7.9812 5.7238 1.2157 13 1 8.9488 5.5880 2.3340 14 1 8.5179 6.6751 0.2096 15 1 6.6883 6.2336 1.7389 16 6 4.1705 2.8326 3.5678 17 6 5.1967 2.5663 4.6709 18 7 4.5647 2.7548 5.9835 19 6 3.2583 2.0828 6.0405 20 6 2.6104 2.3533 7.4010 21 8 3.4912 1.9155 8.4393 22 6 4.7722 2.5510 8.4136 23 6 5.4425 2.2817 7.0637 24 1 -0.5401 -0.9354 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.7399 0.5066 1.0922 30 1 2.4771 1.2358 2.1130 31 1 3.1037 3.4801 1.3448 32 1 4.2986 2.7893 0.2208 33 1 5.3681 4.6104 1.7759 34 1 6.4458 3.7732 2.9187 35 1 9.1838 4.2629 -0.9056 36 1 3.3366 2.1386 3.6721 37 1 3.8043 3.8558 3.6515 38 1 6.0307 3.2603 4.5665 39 1 5.5629 1.5431 4.5871 40 1 3.3958 1.0094 5.9098 41 1 2.6156 2.4672 5.2485 42 1 1.6681 1.8098 7.4700 43 1 2.4231 3.4217 7.5091 44 1 4.6484 3.6252 8.5505 45 1 5.3931 2.1510 9.2152 46 1 6.3941 2.8113 7.0178 47 1 5.6150 1.2114 6.9501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081515510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = -39.651793 kcal Electronic energy + Delta-G solvation = -22864.235713 eV Core-core repulsion = 19660.682168 eV Total energy + Delta-G solvation = -3203.553546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66105 -39.08513 -36.96401 -36.19732 -34.63338 -32.45008 -32.20041 -30.93411 -29.24403 -27.23162 -25.74531 -24.97673 -23.64129 -22.57509 -21.46920 -21.01842 -20.53756 -19.02693 -17.69660 -17.11014 -16.93104 -16.55717 -16.19657 -16.07184 -15.98318 -15.78070 -15.38921 -15.25021 -14.77906 -14.59504 -14.46238 -14.07368 -13.84508 -13.31815 -13.21139 -13.08813 -12.89393 -12.50902 -12.48761 -12.33163 -12.28600 -12.17191 -11.88981 -11.81040 -11.64634 -11.48421 -11.40619 -11.17925 -10.76609 -10.65073 -10.16914 -9.42743 -9.03294 -8.27945 -6.30209 1.33433 1.34630 1.44420 1.45055 2.33448 2.61302 2.95618 3.05307 3.30434 3.81694 3.92706 3.99491 4.01391 4.05173 4.16542 4.20198 4.31161 4.33180 4.37963 4.47177 4.52932 4.57063 4.60804 4.64510 4.72166 4.77684 4.81934 4.86284 4.88454 4.94608 4.95279 5.00986 5.05919 5.08919 5.13742 5.31987 5.42562 5.56379 5.78651 5.84184 5.94419 5.95210 6.04281 6.17228 6.38786 6.65559 6.76473 7.33172 8.88797 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.008408 B = 0.005904 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.174105 B = 4741.786245 C = 7714.729411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C -0.091 4.091 4 C -0.093 4.093 5 C 0.065 3.935 6 N -0.542 5.542 7 C 0.170 3.830 8 C -0.510 4.510 9 H 0.037 0.963 10 C 0.010 3.990 11 N -0.948 5.948 12 Si 0.941 3.059 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.253 1.253 16 C 0.060 3.940 17 C 0.067 3.933 18 N -0.542 5.542 19 C 0.011 3.989 20 C 0.065 3.935 21 O -0.404 6.404 22 C 0.067 3.933 23 C 0.015 3.985 24 H 0.110 0.890 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.053 0.947 33 H -0.014 1.014 34 H 0.030 0.970 35 H 0.266 0.734 36 H 0.088 0.912 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 -2.623 13.959 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.179 4.179 3 C -0.129 4.129 4 C -0.131 4.131 5 C -0.063 4.063 6 N -0.267 5.267 7 C 0.043 3.957 8 C -0.548 4.548 9 H 0.055 0.945 10 C -0.187 4.187 11 N -0.589 5.589 12 Si 0.765 3.235 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.177 1.177 16 C -0.068 4.068 17 C -0.061 4.061 18 N -0.268 5.268 19 C -0.117 4.117 20 C -0.012 4.012 21 O -0.322 6.322 22 C -0.009 4.009 23 C -0.113 4.113 24 H 0.128 0.872 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.004 0.996 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.108 0.892 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.802 -2.659 14.064 20.590 hybrid contribution 0.762 0.691 -0.730 1.262 sum -14.040 -1.967 13.333 19.462 Atomic orbital electron populations 1.23998 0.95457 1.02650 1.00726 1.22978 0.96480 0.98140 1.00319 1.20695 0.97877 0.96124 0.98176 1.21376 0.96833 0.96508 0.98399 1.22003 0.92432 0.97055 0.94794 1.61804 1.13002 1.50161 1.01698 1.19998 0.90657 0.89273 0.95742 1.21234 1.14792 1.03111 1.15696 0.94470 1.25783 0.95355 1.02203 0.95350 1.70047 1.21408 1.39086 1.28312 0.85807 0.79485 0.79512 0.78715 1.18986 1.20759 1.17694 1.22169 0.96517 0.99690 0.88416 1.21988 0.96972 0.99665 0.87474 1.62302 1.04162 1.57474 1.02836 1.22948 0.91646 0.97048 1.00061 1.22794 0.93102 1.00641 0.84631 1.87943 1.25612 1.66637 1.52050 1.22750 0.84083 0.98212 0.95883 1.22858 0.97407 0.98801 0.92251 0.87224 0.88035 0.87442 0.90847 0.91963 0.92879 0.91405 0.94963 0.92793 0.99615 0.95178 0.92503 0.89409 0.95078 0.91734 0.95012 0.94576 0.88555 0.86498 0.91907 0.91867 0.86524 0.89231 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.54 14.32 67.78 0.97 -2.57 16 2 C -0.16 -3.58 9.52 25.64 0.24 -3.34 16 3 C -0.09 -2.33 5.66 29.84 0.17 -2.16 16 4 C -0.09 -2.78 5.24 30.59 0.16 -2.62 16 5 C 0.07 2.40 4.82 86.31 0.42 2.82 16 6 N -0.54 -21.96 4.39 -900.78 -3.95 -25.91 16 7 C 0.17 8.13 3.68 85.56 0.32 8.44 16 8 C -0.51 -29.45 8.85 25.60 0.23 -29.22 16 9 H 0.04 2.41 8.02 -2.91 -0.02 2.38 16 10 C 0.01 0.60 5.47 84.65 0.46 1.07 16 11 N -0.95 -59.32 13.96 21.45 0.30 -59.03 16 12 Si 0.94 44.16 27.55 68.60 1.89 46.05 16 13 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.25 -11.20 6.43 99.48 0.64 -10.56 16 16 C 0.06 1.94 4.06 86.30 0.35 2.29 16 17 C 0.07 2.12 5.24 86.30 0.45 2.57 16 18 N -0.54 -14.17 4.87 -895.19 -4.36 -18.54 16 19 C 0.01 0.24 4.94 86.31 0.43 0.67 16 20 C 0.06 1.22 7.01 72.01 0.50 1.72 16 21 O -0.40 -8.92 10.83 -148.98 -1.61 -10.53 16 22 C 0.07 1.29 7.01 72.01 0.50 1.79 16 23 C 0.02 0.34 5.63 86.31 0.49 0.83 16 24 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 25 H 0.10 1.72 7.84 -2.91 -0.02 1.69 16 26 H 0.11 2.35 8.06 -2.91 -0.02 2.32 16 27 H 0.07 1.70 7.79 -2.39 -0.02 1.68 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.80 6.90 -2.39 -0.02 1.78 16 31 H 0.03 1.09 8.01 -2.39 -0.02 1.08 16 32 H 0.05 2.36 7.09 -2.39 -0.02 2.34 16 33 H -0.01 -0.67 6.84 -2.39 -0.02 -0.68 16 34 H 0.03 1.42 5.57 -2.39 -0.01 1.41 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.09 2.45 4.80 -2.39 -0.01 2.44 16 37 H 0.03 1.01 8.12 -2.39 -0.02 1.00 16 38 H 0.06 2.28 6.29 -2.38 -0.01 2.27 16 39 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 40 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.10 1.99 6.05 -2.39 -0.01 1.98 16 42 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -66.64 362.78 -1.22 -67.85 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.83 Total: 17.82 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 5.69 Total: -17.71 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -8.02 Total: -103.48 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.61 Total: -10.53 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.89 Total: 46.05 kcal Total: -66.64 -1.22 -67.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.201 kcal (2) G-P(sol) polarization free energy of solvation -66.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds