Wall clock time and date at job start Tue Mar 31 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47203 * 2 1 4 4 C 1.52996 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47469 * 304.99801 * 4 3 2 6 6 C 1.53000 * 109.47041 * 64.99921 * 4 3 2 7 7 C 1.50701 * 109.47091 * 184.99628 * 4 3 2 8 8 O 1.21279 * 120.00132 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99995 * 180.02562 * 7 4 3 10 10 C 1.46498 * 120.00110 * 180.02562 * 9 7 4 11 11 C 1.52995 * 109.47509 * 179.97438 * 10 9 7 12 12 C 1.53349 * 109.42091 * 295.12909 * 11 10 9 13 13 C 1.53193 * 109.14947 * 178.67009 * 12 11 10 14 14 N 1.46932 * 108.89365 * 54.58000 * 13 12 11 15 15 C 1.36929 * 120.62923 * 126.33970 * 14 13 12 16 16 H 1.07994 * 120.00472 * 332.28422 * 15 14 13 17 17 C 1.38823 * 119.99710 * 152.28799 * 15 14 13 18 18 N 1.31617 * 119.99601 * 342.59309 * 17 15 14 19 19 Si 1.86793 * 119.99892 * 162.59877 * 17 15 14 20 20 H 1.48502 * 109.47323 * 94.34576 * 19 17 15 21 21 H 1.48497 * 109.47157 * 214.34797 * 19 17 15 22 22 H 1.48496 * 109.47300 * 334.34614 * 19 17 15 23 23 C 1.46927 * 118.73576 * 306.31982 * 14 13 12 24 24 C 1.53038 * 109.46293 * 174.99544 * 11 10 9 25 25 H 1.08995 * 109.46793 * 60.00179 * 1 2 3 26 26 H 1.09002 * 109.46870 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47003 * 299.99821 * 1 2 3 28 28 H 1.08999 * 109.47194 * 239.99680 * 2 1 3 29 29 H 1.09004 * 109.46753 * 119.99896 * 2 1 3 30 30 H 1.08999 * 109.47307 * 59.99749 * 3 2 1 31 31 H 1.09005 * 109.46842 * 300.00056 * 3 2 1 32 32 H 1.09001 * 109.47457 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.47478 * 299.99587 * 6 4 3 34 34 H 1.09003 * 109.47272 * 60.00218 * 6 4 3 35 35 H 0.96998 * 120.00023 * 359.97438 * 9 7 4 36 36 H 1.09002 * 109.47215 * 59.99635 * 10 9 7 37 37 H 1.09003 * 109.47121 * 299.99677 * 10 9 7 38 38 H 1.09005 * 109.45806 * 55.02951 * 11 10 9 39 39 H 1.08996 * 109.68615 * 58.70772 * 12 11 10 40 40 H 1.08996 * 109.47201 * 298.50878 * 12 11 10 41 41 H 1.08995 * 109.58815 * 294.71872 * 13 12 11 42 42 H 1.09000 * 109.58606 * 174.43227 * 13 12 11 43 43 H 0.97000 * 119.99465 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.58712 * 173.40018 * 23 14 13 45 45 H 1.09003 * 109.58223 * 293.67509 * 23 14 13 46 46 H 1.09002 * 109.49898 * 61.43965 * 24 11 10 47 47 H 1.09001 * 109.50239 * 301.34052 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0723 2.8579 0.1244 8 8 3.2842 3.7762 0.2047 9 7 5.3974 3.1033 0.1458 10 6 5.8857 4.4792 0.2667 11 6 7.4156 4.4792 0.2672 12 6 7.9251 3.7530 1.5181 13 6 9.4567 3.7276 1.4956 14 7 9.9532 5.1028 1.3499 15 6 10.8615 5.6143 2.2379 16 1 10.8941 5.2426 3.2514 17 6 11.7403 6.6107 1.8354 18 7 11.9472 6.8272 0.5538 19 14 12.6291 7.6439 3.1127 20 1 13.9628 7.0516 3.3878 21 1 12.7980 9.0273 2.6000 22 1 11.8331 7.6744 4.3659 23 6 9.4570 5.9185 0.2332 24 6 7.9255 5.9222 0.2676 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.1706 0.8330 -1.3062 33 1 3.7173 -0.1912 -1.3960 34 1 3.7176 1.4219 -2.1485 35 1 6.0277 2.3688 0.0820 36 1 5.5224 4.9132 1.1982 37 1 5.5223 5.0689 -0.5749 38 1 7.7791 3.9660 -0.6231 39 1 7.5445 2.7317 1.5303 40 1 7.5830 4.2800 2.4088 41 1 9.7998 3.1243 0.6552 42 1 9.8288 3.3016 2.4273 43 1 12.5615 7.5232 0.2725 44 1 9.8273 6.9387 0.3330 45 1 9.8024 5.4952 -0.7101 46 1 7.5832 6.4288 1.1700 47 1 7.5431 6.4435 -0.6100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081733433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:26 Heat of formation + Delta-G solvation = -54.758071 kcal Electronic energy + Delta-G solvation = -22592.265730 eV Core-core repulsion = 19388.057126 eV Total energy + Delta-G solvation = -3204.208603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01877 -37.90752 -36.18287 -34.92050 -33.01222 -32.08816 -30.70748 -29.70556 -27.04384 -26.78623 -24.52939 -23.44668 -22.22501 -21.32079 -20.91245 -19.87924 -19.06247 -17.11242 -16.63293 -16.02950 -15.79392 -15.11059 -14.85690 -14.30036 -14.11038 -13.91490 -13.75412 -13.51616 -13.28194 -13.10617 -12.72305 -12.51713 -12.36660 -12.33777 -12.11359 -11.85326 -11.48096 -11.33774 -11.20598 -11.08477 -10.98587 -10.77022 -10.71257 -10.50985 -10.25031 -10.22070 -9.95703 -9.74478 -9.54264 -9.40348 -8.94841 -8.46842 -6.67654 -5.79403 -3.20957 2.67272 3.23721 3.36980 3.44486 3.47139 4.48274 4.49593 4.53265 4.64884 4.89977 4.97877 5.03572 5.11099 5.22474 5.28562 5.37810 5.39530 5.41880 5.52283 5.55500 5.60638 5.62413 5.71031 5.81446 5.86715 5.89075 5.95459 6.04576 6.06470 6.14903 6.15700 6.31703 6.43668 6.49670 6.59875 6.69253 6.76133 6.80921 6.97343 7.36697 7.55936 7.65718 7.79366 8.26469 8.44895 9.21255 9.85044 10.41558 11.29214 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046111 B = 0.002741 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.090681 B =10212.561641 C =10271.715689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.096 0.904 6 C -0.145 4.145 7 C 0.512 3.488 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.123 3.877 11 C -0.090 4.090 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.171 3.829 24 C -0.133 4.133 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.088 0.912 45 H 0.017 0.983 46 H 0.057 0.943 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.111 -13.202 -3.159 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.203 4.203 7 C 0.298 3.702 8 O -0.423 6.423 9 N -0.376 5.376 10 C -0.001 4.001 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.045 3.955 24 C -0.172 4.172 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.035 0.965 46 H 0.076 0.924 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.542 -12.392 -3.166 21.710 hybrid contribution 0.892 0.239 0.565 1.083 sum -16.650 -12.153 -2.601 20.777 Atomic orbital electron populations 1.21763 0.95815 1.01423 1.01990 1.21608 0.95990 0.96724 1.02044 1.21424 0.92328 0.96531 1.03534 1.21348 0.97836 0.93669 1.00507 0.88608 1.21832 1.01252 1.01299 0.95916 1.20664 0.82332 0.91249 0.75907 1.90686 1.55418 1.46533 1.49690 1.46134 1.06896 1.10121 1.74439 1.21568 0.94825 0.81997 1.01677 1.21359 0.91680 0.98847 0.98970 1.22124 0.99107 0.98074 0.97302 1.20884 0.90772 0.87914 0.98570 1.44055 1.48263 1.07819 1.31394 1.19177 1.09783 1.17996 0.91150 0.91765 1.25035 0.97290 1.01685 0.95748 1.70035 1.37664 1.33722 1.13343 0.86300 0.79561 0.79941 0.81094 1.21487 1.21547 1.20450 1.20769 0.87072 0.98242 0.89384 1.22170 1.00852 0.93631 1.00584 0.92714 0.92859 0.92700 0.91747 0.92031 0.91147 0.91346 0.92073 0.91256 0.92080 0.76572 0.91737 0.91931 0.91377 0.93474 0.92204 0.96642 0.92933 0.93660 0.89387 0.96453 0.92406 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.88 5.69 -26.73 -0.15 -1.03 16 3 C -0.10 -0.92 4.03 -26.73 -0.11 -1.03 16 4 C -0.11 -1.02 2.72 -91.77 -0.25 -1.27 16 5 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 7 C 0.51 6.59 7.15 -10.99 -0.08 6.52 16 8 O -0.55 -9.23 15.92 5.56 0.09 -9.14 16 9 N -0.72 -8.77 5.17 -60.30 -0.31 -9.08 16 10 C 0.12 1.76 5.06 -4.05 -0.02 1.73 16 11 C -0.09 -1.41 2.19 -90.42 -0.20 -1.60 16 12 C -0.13 -2.07 5.27 -26.45 -0.14 -2.20 16 13 C 0.15 2.94 6.50 -3.71 -0.02 2.91 16 14 N -0.59 -14.64 3.00 -172.31 -0.52 -15.16 16 15 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 16 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 18 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 19 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16 24 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.75 7.95 -51.93 -0.41 0.33 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 33 H 0.07 0.41 6.57 -51.93 -0.34 0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.40 3.98 7.07 -40.82 -0.29 3.69 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -31.08 363.91 -9.09 -40.18 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.76 Total: -0.37 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.67 Total: -3.05 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.21 Total: -49.74 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.08 -9.09 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.580 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds