Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47203 * 2 1 4 4 C 1.52996 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47469 * 304.99801 * 4 3 2 6 6 C 1.53000 * 109.47041 * 64.99921 * 4 3 2 7 7 C 1.50701 * 109.47091 * 184.99628 * 4 3 2 8 8 O 1.21279 * 120.00132 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99995 * 180.02562 * 7 4 3 10 10 C 1.46498 * 120.00110 * 180.02562 * 9 7 4 11 11 C 1.52995 * 109.47509 * 179.97438 * 10 9 7 12 12 C 1.53349 * 109.42091 * 295.12909 * 11 10 9 13 13 C 1.53193 * 109.14947 * 178.67009 * 12 11 10 14 14 N 1.46932 * 108.89365 * 54.58000 * 13 12 11 15 15 C 1.36929 * 120.62923 * 126.33970 * 14 13 12 16 16 H 1.07994 * 120.00472 * 332.28422 * 15 14 13 17 17 C 1.38823 * 119.99710 * 152.28799 * 15 14 13 18 18 N 1.31617 * 119.99601 * 342.59309 * 17 15 14 19 19 Si 1.86793 * 119.99892 * 162.59877 * 17 15 14 20 20 H 1.48502 * 109.47323 * 94.34576 * 19 17 15 21 21 H 1.48497 * 109.47157 * 214.34797 * 19 17 15 22 22 H 1.48496 * 109.47300 * 334.34614 * 19 17 15 23 23 C 1.46927 * 118.73576 * 306.31982 * 14 13 12 24 24 C 1.53038 * 109.46293 * 174.99544 * 11 10 9 25 25 H 1.08995 * 109.46793 * 60.00179 * 1 2 3 26 26 H 1.09002 * 109.46870 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47003 * 299.99821 * 1 2 3 28 28 H 1.08999 * 109.47194 * 239.99680 * 2 1 3 29 29 H 1.09004 * 109.46753 * 119.99896 * 2 1 3 30 30 H 1.08999 * 109.47307 * 59.99749 * 3 2 1 31 31 H 1.09005 * 109.46842 * 300.00056 * 3 2 1 32 32 H 1.09001 * 109.47457 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.47478 * 299.99587 * 6 4 3 34 34 H 1.09003 * 109.47272 * 60.00218 * 6 4 3 35 35 H 0.96998 * 120.00023 * 359.97438 * 9 7 4 36 36 H 1.09002 * 109.47215 * 59.99635 * 10 9 7 37 37 H 1.09003 * 109.47121 * 299.99677 * 10 9 7 38 38 H 1.09005 * 109.45806 * 55.02951 * 11 10 9 39 39 H 1.08996 * 109.68615 * 58.70772 * 12 11 10 40 40 H 1.08996 * 109.47201 * 298.50878 * 12 11 10 41 41 H 1.08995 * 109.58815 * 294.71872 * 13 12 11 42 42 H 1.09000 * 109.58606 * 174.43227 * 13 12 11 43 43 H 0.97000 * 119.99465 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.58712 * 173.40018 * 23 14 13 45 45 H 1.09003 * 109.58223 * 293.67509 * 23 14 13 46 46 H 1.09002 * 109.49898 * 61.43965 * 24 11 10 47 47 H 1.09001 * 109.50239 * 301.34052 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0723 2.8579 0.1244 8 8 3.2842 3.7762 0.2047 9 7 5.3974 3.1033 0.1458 10 6 5.8857 4.4792 0.2667 11 6 7.4156 4.4792 0.2672 12 6 7.9251 3.7530 1.5181 13 6 9.4567 3.7276 1.4956 14 7 9.9532 5.1028 1.3499 15 6 10.8615 5.6143 2.2379 16 1 10.8941 5.2426 3.2514 17 6 11.7403 6.6107 1.8354 18 7 11.9472 6.8272 0.5538 19 14 12.6291 7.6439 3.1127 20 1 13.9628 7.0516 3.3878 21 1 12.7980 9.0273 2.6000 22 1 11.8331 7.6744 4.3659 23 6 9.4570 5.9185 0.2332 24 6 7.9255 5.9222 0.2676 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.1706 0.8330 -1.3062 33 1 3.7173 -0.1912 -1.3960 34 1 3.7176 1.4219 -2.1485 35 1 6.0277 2.3688 0.0820 36 1 5.5224 4.9132 1.1982 37 1 5.5223 5.0689 -0.5749 38 1 7.7791 3.9660 -0.6231 39 1 7.5445 2.7317 1.5303 40 1 7.5830 4.2800 2.4088 41 1 9.7998 3.1243 0.6552 42 1 9.8288 3.3016 2.4273 43 1 12.5615 7.5232 0.2725 44 1 9.8273 6.9387 0.3330 45 1 9.8024 5.4952 -0.7101 46 1 7.5832 6.4288 1.1700 47 1 7.5431 6.4435 -0.6100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081733433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -73.007363 kcal Electronic energy + Delta-G solvation = -22593.057078 eV Core-core repulsion = 19388.057126 eV Total energy + Delta-G solvation = -3204.999952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05243 -39.40542 -36.99192 -36.32279 -34.52233 -33.03647 -32.25741 -31.36659 -28.49455 -27.46948 -26.03022 -24.56013 -23.76891 -22.63727 -21.89269 -20.95134 -20.47982 -18.71853 -17.90577 -17.07574 -16.77848 -16.65460 -16.02018 -15.71966 -15.31381 -15.07374 -15.00484 -14.83557 -14.75631 -14.01500 -14.00524 -13.83035 -13.52041 -13.30817 -13.11945 -13.00388 -12.81610 -12.70690 -12.56192 -12.26810 -12.11866 -12.01999 -11.85831 -11.81884 -11.71987 -11.60729 -11.38270 -11.24599 -11.10297 -10.68151 -10.52195 -10.04834 -8.67356 -7.87719 -5.31675 1.45119 1.47368 1.56962 1.68173 2.25371 2.51104 3.26868 3.70916 3.72397 3.82635 3.86133 3.94391 4.00209 4.08814 4.33113 4.40023 4.43767 4.51342 4.53808 4.65007 4.69115 4.73640 4.81017 4.84498 4.92900 4.93900 4.98385 5.02403 5.05747 5.13334 5.16236 5.26003 5.28293 5.29903 5.32886 5.39558 5.46287 5.48777 5.54248 5.55887 5.65909 5.78886 6.39763 6.60295 7.15620 7.29295 7.88321 8.38736 9.18579 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046111 B = 0.002741 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.090681 B =10212.561641 C =10271.715689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.105 4.105 5 H 0.119 0.881 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.591 6.591 9 N -0.715 5.715 10 C 0.135 3.865 11 C -0.077 4.077 12 C -0.114 4.114 13 C 0.139 3.861 14 N -0.613 5.613 15 C -0.261 4.261 16 H 0.065 0.935 17 C -0.053 4.053 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.177 3.823 24 C -0.123 4.123 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.414 0.586 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.019 0.981 42 H 0.051 0.949 43 H 0.249 0.751 44 H 0.051 0.949 45 H -0.001 1.001 46 H 0.048 0.952 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -15.444 -2.856 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.137 0.863 6 C -0.200 4.200 7 C 0.297 3.703 8 O -0.472 6.472 9 N -0.367 5.367 10 C 0.011 3.989 11 C -0.096 4.096 12 C -0.152 4.152 13 C 0.014 3.986 14 N -0.336 5.336 15 C -0.391 4.391 16 H 0.082 0.918 17 C -0.248 4.248 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.196 1.196 23 C 0.051 3.949 24 C -0.162 4.162 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.251 0.749 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.017 0.983 46 H 0.067 0.933 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.463 -14.684 -2.855 23.763 hybrid contribution 1.168 0.902 0.461 1.546 sum -17.295 -13.783 -2.394 22.244 Atomic orbital electron populations 1.21787 0.95866 1.02065 1.01529 1.21582 0.95959 0.95098 1.03133 1.21393 0.92658 0.97792 1.01820 1.21388 0.97478 0.91236 1.02462 0.86328 1.21849 1.01905 1.02052 0.94204 1.21398 0.81931 0.92447 0.74561 1.90672 1.56516 1.48296 1.51722 1.46004 1.07169 1.09557 1.73945 1.21233 0.93373 0.83333 1.00939 1.21189 0.92562 0.96665 0.99170 1.21980 0.95959 1.00342 0.96965 1.21078 0.93316 0.85599 0.98594 1.44342 1.48253 1.09886 1.31158 1.19499 1.09840 1.18059 0.91740 0.91761 1.25773 0.98583 1.03012 0.97437 1.70180 1.38604 1.34270 1.15024 0.85308 0.78442 0.77977 0.79016 1.21168 1.21916 1.19635 1.20568 0.90091 0.95893 0.88315 1.21976 0.97156 0.96123 1.00958 0.93106 0.91629 0.93342 0.90416 0.91038 0.93162 0.92905 0.91020 0.89153 0.93185 0.74905 0.92960 0.92364 0.90414 0.89513 0.93309 0.96272 0.93021 0.94150 0.93102 0.98268 0.93300 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.38 5.69 30.60 0.17 -1.21 16 3 C -0.10 -1.67 4.03 30.59 0.12 -1.55 16 4 C -0.10 -1.62 2.72 -11.54 -0.03 -1.65 16 5 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 6 C -0.14 -1.62 8.84 71.98 0.64 -0.99 16 7 C 0.51 12.18 7.15 87.66 0.63 12.81 16 8 O -0.59 -19.75 15.92 -3.03 -0.05 -19.80 16 9 N -0.71 -15.38 5.17 -463.07 -2.39 -17.78 16 10 C 0.14 3.62 5.06 86.38 0.44 4.06 16 11 C -0.08 -2.26 2.19 -10.67 -0.02 -2.28 16 12 C -0.11 -3.42 5.27 30.78 0.16 -3.26 16 13 C 0.14 5.46 6.50 86.36 0.56 6.02 16 14 N -0.61 -30.43 3.00 -699.08 -2.09 -32.52 16 15 C -0.26 -14.39 9.58 84.04 0.81 -13.59 16 16 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 17 C -0.05 -2.97 4.91 84.87 0.42 -2.55 16 18 N -0.93 -55.48 11.19 21.65 0.24 -55.23 16 19 Si 0.96 45.16 29.59 68.60 2.03 47.19 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 C 0.18 8.45 5.31 86.36 0.46 8.91 16 24 C -0.12 -4.49 5.36 30.67 0.16 -4.32 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.70 6.57 -2.39 -0.02 0.69 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.07 0.68 7.56 -2.39 -0.02 0.66 16 33 H 0.09 0.68 6.57 -2.39 -0.02 0.67 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.41 6.60 7.07 -92.71 -0.66 5.94 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.09 1.96 7.16 -2.39 -0.02 1.94 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.05 2.79 6.04 -2.39 -0.01 2.78 16 45 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -69.16 363.91 3.23 -65.93 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.26 Total: 12.93 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.23 Total: -0.71 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.24 Total: -105.53 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.80 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.16 3.23 -65.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.074 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds