Wall clock time and date at job start Tue Mar 31 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 C 1.53004 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46847 * 54.99546 * 4 3 2 6 6 C 1.53003 * 109.46612 * 294.99866 * 4 3 2 7 7 C 1.50701 * 109.47131 * 174.99956 * 4 3 2 8 8 O 1.21285 * 120.00132 * 359.97438 * 7 4 3 9 9 N 1.34770 * 119.99956 * 179.97438 * 7 4 3 10 10 C 1.46501 * 120.00363 * 179.97438 * 9 7 4 11 11 C 1.52991 * 109.47474 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.46226 * 295.02909 * 11 10 9 13 13 C 1.53191 * 109.31698 * 178.60204 * 12 11 10 14 14 N 1.46924 * 108.76296 * 54.65249 * 13 12 11 15 15 C 1.36936 * 120.62974 * 126.36751 * 14 13 12 16 16 H 1.08007 * 120.00072 * 331.85894 * 15 14 13 17 17 C 1.38810 * 120.00457 * 151.85600 * 15 14 13 18 18 N 1.31620 * 119.99978 * 343.06997 * 17 15 14 19 19 Si 1.86803 * 120.00270 * 163.06446 * 17 15 14 20 20 H 1.48496 * 109.46779 * 90.00390 * 19 17 15 21 21 H 1.48496 * 109.46942 * 210.00667 * 19 17 15 22 22 H 1.48497 * 109.46796 * 330.00545 * 19 17 15 23 23 C 1.46926 * 118.74184 * 306.38590 * 14 13 12 24 24 C 1.53043 * 109.46408 * 174.97405 * 11 10 9 25 25 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46953 * 300.00305 * 1 2 3 27 27 H 1.09006 * 109.46485 * 60.00040 * 1 2 3 28 28 H 1.09004 * 109.46874 * 119.99592 * 2 1 3 29 29 H 1.08998 * 109.46953 * 239.99695 * 2 1 3 30 30 H 1.09007 * 109.47034 * 300.00101 * 3 2 1 31 31 H 1.09006 * 109.47472 * 59.99662 * 3 2 1 32 32 H 1.08995 * 109.47153 * 60.00147 * 6 4 3 33 33 H 1.09006 * 109.46766 * 180.02562 * 6 4 3 34 34 H 1.08996 * 109.47253 * 299.99432 * 6 4 3 35 35 H 0.97009 * 120.00112 * 0.02562 * 9 7 4 36 36 H 1.08997 * 109.46945 * 300.00911 * 10 9 7 37 37 H 1.09003 * 109.46754 * 59.99844 * 10 9 7 38 38 H 1.08996 * 109.46140 * 54.99893 * 11 10 9 39 39 H 1.09006 * 109.49720 * 298.56979 * 12 11 10 40 40 H 1.09004 * 109.49772 * 58.65836 * 12 11 10 41 41 H 1.09003 * 109.59345 * 294.87010 * 13 12 11 42 42 H 1.08996 * 109.70493 * 174.50621 * 13 12 11 43 43 H 0.96998 * 120.00066 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.58538 * 293.82005 * 23 14 13 45 45 H 1.09003 * 109.70103 * 173.46751 * 23 14 13 46 46 H 1.08995 * 109.49596 * 301.34084 * 24 11 10 47 47 H 1.09002 * 109.49539 * 61.39727 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0805 0.8327 1.3065 7 6 4.0724 2.8579 -0.1245 8 8 3.2842 3.7763 -0.2048 9 7 5.3974 3.1033 -0.1460 10 6 5.8858 4.4792 -0.2669 11 6 7.4157 4.4792 -0.2674 12 6 7.9260 3.9854 1.0882 13 6 9.4575 3.9535 1.0721 14 7 9.9539 5.2820 0.6883 15 6 10.8620 5.9411 1.4731 16 1 10.8901 5.7574 2.5371 17 6 11.7467 6.8452 0.9014 18 7 11.9513 6.8332 -0.3987 19 14 12.6466 8.0790 1.9771 20 1 13.9313 7.4918 2.4353 21 1 12.9168 9.3126 1.1958 22 1 11.8070 8.4134 3.1555 23 6 9.4570 5.8902 -0.5535 24 6 7.9256 5.9000 -0.5192 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.7172 -0.1911 1.3960 33 1 5.1706 0.8331 1.3062 34 1 3.7176 1.4220 2.1485 35 1 6.0278 2.3687 -0.0821 36 1 5.5224 4.9131 -1.1984 37 1 5.5223 5.0690 0.5746 38 1 7.7785 3.8183 -1.0546 39 1 7.5842 4.6599 1.8734 40 1 7.5434 2.9824 1.2777 41 1 9.8002 3.2126 0.3497 42 1 9.8302 3.6966 2.0637 43 1 12.5692 7.4652 -0.7983 44 1 9.7996 5.3073 -1.4084 45 1 9.8273 6.9121 -0.6360 46 1 7.5426 6.2600 -1.4741 47 1 7.5832 6.5565 0.2808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081733434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:30 Heat of formation + Delta-G solvation = -54.880071 kcal Electronic energy + Delta-G solvation = -22619.550046 eV Core-core repulsion = 19415.336152 eV Total energy + Delta-G solvation = -3204.213894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01921 -37.91972 -36.18142 -34.92006 -33.01209 -32.08885 -30.70408 -29.71019 -27.04619 -26.77232 -24.52670 -23.45385 -22.22403 -21.32252 -20.90448 -19.89733 -19.04057 -17.10845 -16.66863 -16.02038 -15.78747 -15.10046 -14.79714 -14.30744 -14.16915 -14.02251 -13.61550 -13.49445 -13.32132 -13.07896 -12.76172 -12.50826 -12.37022 -12.29326 -12.12532 -11.85695 -11.47207 -11.33905 -11.20547 -11.08050 -10.98359 -10.76897 -10.71035 -10.51034 -10.25058 -10.22328 -9.96052 -9.74566 -9.54407 -9.40146 -8.94896 -8.46989 -6.66884 -5.79256 -3.21549 2.67203 3.23830 3.37080 3.44287 3.46872 4.48537 4.49526 4.53405 4.65202 4.90369 4.98155 5.03826 5.11537 5.22117 5.28979 5.37914 5.40176 5.41912 5.52441 5.56690 5.60744 5.62625 5.71256 5.82634 5.87489 5.89125 5.95342 6.04983 6.06933 6.14885 6.15724 6.31916 6.43774 6.49684 6.59956 6.69377 6.76445 6.81147 6.97488 7.36563 7.55918 7.65659 7.79244 8.26467 8.45210 9.21390 9.84991 10.41698 11.29314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046912 B = 0.002776 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.715577 B =10082.635162 C =10301.059695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.146 4.146 7 C 0.512 3.488 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.123 3.877 11 C -0.090 4.090 12 C -0.126 4.126 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.172 3.828 24 C -0.133 4.133 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.103 -13.466 -0.058 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.203 4.203 7 C 0.298 3.702 8 O -0.423 6.423 9 N -0.376 5.376 10 C -0.001 4.001 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.046 3.954 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.532 -12.670 -0.204 21.632 hybrid contribution 0.896 0.326 0.453 1.056 sum -16.637 -12.343 0.250 20.717 Atomic orbital electron populations 1.21763 0.95816 1.01421 1.01993 1.21607 0.95988 0.96726 1.02039 1.21427 0.92334 0.96526 1.03536 1.21349 0.97829 0.93647 1.00510 0.88665 1.21833 1.01298 1.01282 0.95910 1.20667 0.82331 0.91255 0.75906 1.90688 1.55417 1.46534 1.49694 1.46137 1.06897 1.10104 1.74454 1.21567 0.94815 0.82055 1.01623 1.21304 0.91690 0.99373 0.98503 1.22068 0.99096 0.99045 0.96347 1.20888 0.90746 0.88385 0.98100 1.44047 1.48278 1.14154 1.25051 1.19165 1.09567 1.19553 0.89860 0.91802 1.25046 0.97246 1.01590 0.95829 1.70027 1.37529 1.37545 1.09675 0.86314 0.79647 0.81121 0.79803 1.21415 1.21548 1.20501 1.20756 0.87051 1.00164 0.87433 1.22177 1.00876 0.94091 1.00124 0.92860 0.92698 0.92716 0.91727 0.92056 0.91174 0.91320 0.91267 0.92031 0.92033 0.76569 0.91935 0.91729 0.91374 0.92207 0.93528 0.96649 0.92904 0.93645 0.96476 0.89416 0.93097 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.88 5.69 -26.73 -0.15 -1.03 16 3 C -0.10 -0.92 4.03 -26.73 -0.11 -1.03 16 4 C -0.11 -1.01 2.73 -91.77 -0.25 -1.26 16 5 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 6 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 7 C 0.51 6.60 7.15 -10.99 -0.08 6.52 16 8 O -0.55 -9.23 15.92 5.55 0.09 -9.14 16 9 N -0.72 -8.77 5.16 -60.30 -0.31 -9.08 16 10 C 0.12 1.76 5.06 -4.05 -0.02 1.74 16 11 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 12 C -0.13 -2.05 5.25 -26.61 -0.14 -2.19 16 13 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 14 N -0.59 -14.64 2.99 -172.32 -0.52 -15.15 16 15 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 19 Si 0.90 21.65 29.59 -169.99 -5.03 16.63 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 24 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.74 7.96 -51.93 -0.41 0.32 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.42 6.56 -51.93 -0.34 0.07 16 33 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.40 3.98 7.07 -40.82 -0.29 3.69 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -31.07 363.90 -9.09 -40.16 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.76 Total: -0.34 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.67 Total: -3.05 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.21 Total: -49.74 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.07 -9.09 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.715 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds