Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 C 1.53004 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46847 * 54.99546 * 4 3 2 6 6 C 1.53003 * 109.46612 * 294.99866 * 4 3 2 7 7 C 1.50701 * 109.47131 * 174.99956 * 4 3 2 8 8 O 1.21285 * 120.00132 * 359.97438 * 7 4 3 9 9 N 1.34770 * 119.99956 * 179.97438 * 7 4 3 10 10 C 1.46501 * 120.00363 * 179.97438 * 9 7 4 11 11 C 1.52991 * 109.47474 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.46226 * 295.02909 * 11 10 9 13 13 C 1.53191 * 109.31698 * 178.60204 * 12 11 10 14 14 N 1.46924 * 108.76296 * 54.65249 * 13 12 11 15 15 C 1.36936 * 120.62974 * 126.36751 * 14 13 12 16 16 H 1.08007 * 120.00072 * 331.85894 * 15 14 13 17 17 C 1.38810 * 120.00457 * 151.85600 * 15 14 13 18 18 N 1.31620 * 119.99978 * 343.06997 * 17 15 14 19 19 Si 1.86803 * 120.00270 * 163.06446 * 17 15 14 20 20 H 1.48496 * 109.46779 * 90.00390 * 19 17 15 21 21 H 1.48496 * 109.46942 * 210.00667 * 19 17 15 22 22 H 1.48497 * 109.46796 * 330.00545 * 19 17 15 23 23 C 1.46926 * 118.74184 * 306.38590 * 14 13 12 24 24 C 1.53043 * 109.46408 * 174.97405 * 11 10 9 25 25 H 1.08997 * 109.47281 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46953 * 300.00305 * 1 2 3 27 27 H 1.09006 * 109.46485 * 60.00040 * 1 2 3 28 28 H 1.09004 * 109.46874 * 119.99592 * 2 1 3 29 29 H 1.08998 * 109.46953 * 239.99695 * 2 1 3 30 30 H 1.09007 * 109.47034 * 300.00101 * 3 2 1 31 31 H 1.09006 * 109.47472 * 59.99662 * 3 2 1 32 32 H 1.08995 * 109.47153 * 60.00147 * 6 4 3 33 33 H 1.09006 * 109.46766 * 180.02562 * 6 4 3 34 34 H 1.08996 * 109.47253 * 299.99432 * 6 4 3 35 35 H 0.97009 * 120.00112 * 0.02562 * 9 7 4 36 36 H 1.08997 * 109.46945 * 300.00911 * 10 9 7 37 37 H 1.09003 * 109.46754 * 59.99844 * 10 9 7 38 38 H 1.08996 * 109.46140 * 54.99893 * 11 10 9 39 39 H 1.09006 * 109.49720 * 298.56979 * 12 11 10 40 40 H 1.09004 * 109.49772 * 58.65836 * 12 11 10 41 41 H 1.09003 * 109.59345 * 294.87010 * 13 12 11 42 42 H 1.08996 * 109.70493 * 174.50621 * 13 12 11 43 43 H 0.96998 * 120.00066 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.58538 * 293.82005 * 23 14 13 45 45 H 1.09003 * 109.70103 * 173.46751 * 23 14 13 46 46 H 1.08995 * 109.49596 * 301.34084 * 24 11 10 47 47 H 1.09002 * 109.49539 * 61.39727 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0805 0.8327 1.3065 7 6 4.0724 2.8579 -0.1245 8 8 3.2842 3.7763 -0.2048 9 7 5.3974 3.1033 -0.1460 10 6 5.8858 4.4792 -0.2669 11 6 7.4157 4.4792 -0.2674 12 6 7.9260 3.9854 1.0882 13 6 9.4575 3.9535 1.0721 14 7 9.9539 5.2820 0.6883 15 6 10.8620 5.9411 1.4731 16 1 10.8901 5.7574 2.5371 17 6 11.7467 6.8452 0.9014 18 7 11.9513 6.8332 -0.3987 19 14 12.6466 8.0790 1.9771 20 1 13.9313 7.4918 2.4353 21 1 12.9168 9.3126 1.1958 22 1 11.8070 8.4134 3.1555 23 6 9.4570 5.8902 -0.5535 24 6 7.9256 5.9000 -0.5192 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.7172 -0.1911 1.3960 33 1 5.1706 0.8331 1.3062 34 1 3.7176 1.4220 2.1485 35 1 6.0278 2.3687 -0.0821 36 1 5.5224 4.9131 -1.1984 37 1 5.5223 5.0690 0.5746 38 1 7.7785 3.8183 -1.0546 39 1 7.5842 4.6599 1.8734 40 1 7.5434 2.9824 1.2777 41 1 9.8002 3.2126 0.3497 42 1 9.8302 3.6966 2.0637 43 1 12.5692 7.4652 -0.7983 44 1 9.7996 5.3073 -1.4084 45 1 9.8273 6.9121 -0.6360 46 1 7.5426 6.2600 -1.4741 47 1 7.5832 6.5565 0.2808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081733434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = -73.120477 kcal Electronic energy + Delta-G solvation = -22620.341009 eV Core-core repulsion = 19415.336152 eV Total energy + Delta-G solvation = -3205.004857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05448 -39.41626 -36.99059 -36.32401 -34.52400 -33.03706 -32.25441 -31.37187 -28.49260 -27.46752 -26.02701 -24.56979 -23.76515 -22.63853 -21.88850 -20.97931 -20.45006 -18.70820 -17.93805 -17.07610 -16.80193 -16.62290 -15.97865 -15.66386 -15.32402 -15.30503 -14.87773 -14.86828 -14.66366 -14.08725 -13.99056 -13.81353 -13.50431 -13.31247 -13.11706 -12.99436 -12.81926 -12.70741 -12.55687 -12.27227 -12.12075 -12.02091 -11.85914 -11.81869 -11.72093 -11.60439 -11.38109 -11.24307 -11.10884 -10.68018 -10.52249 -10.04919 -8.66558 -7.87514 -5.32243 1.45320 1.47421 1.56737 1.68081 2.25391 2.51111 3.27130 3.71033 3.72258 3.82311 3.86894 3.94604 4.00341 4.08495 4.33340 4.39920 4.43605 4.51595 4.53920 4.65472 4.69386 4.73525 4.81014 4.84515 4.93016 4.93897 4.98914 5.02444 5.05855 5.13940 5.16097 5.26231 5.28694 5.30063 5.32903 5.39605 5.46417 5.48752 5.54247 5.55853 5.65902 5.78782 6.40029 6.60241 7.15815 7.29256 7.88321 8.38913 9.18680 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046912 B = 0.002776 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.715577 B =10082.635162 C =10301.059695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.104 4.104 5 H 0.120 0.880 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.592 6.592 9 N -0.715 5.715 10 C 0.135 3.865 11 C -0.077 4.077 12 C -0.113 4.113 13 C 0.140 3.860 14 N -0.613 5.613 15 C -0.261 4.261 16 H 0.064 0.936 17 C -0.052 4.052 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.272 1.272 23 C 0.178 3.822 24 C -0.123 4.123 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.414 0.586 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.019 0.981 42 H 0.052 0.948 43 H 0.249 0.751 44 H -0.001 1.001 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.013 -15.629 0.594 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.125 4.125 5 H 0.137 0.863 6 C -0.201 4.201 7 C 0.297 3.703 8 O -0.472 6.472 9 N -0.367 5.367 10 C 0.011 3.989 11 C -0.096 4.096 12 C -0.152 4.152 13 C 0.014 3.986 14 N -0.336 5.336 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.248 4.248 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.210 1.210 21 H -0.219 1.219 22 H -0.197 1.197 23 C 0.052 3.948 24 C -0.162 4.162 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.017 0.983 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.444 -14.881 0.466 23.704 hybrid contribution 1.168 0.963 0.245 1.534 sum -17.276 -13.918 0.711 22.197 Atomic orbital electron populations 1.21787 0.95871 1.02066 1.01526 1.21581 0.95955 0.95093 1.03138 1.21396 0.92665 0.97794 1.01814 1.21388 0.97469 0.91226 1.02441 0.86257 1.21854 1.01952 1.02042 0.94222 1.21400 0.81929 0.92451 0.74560 1.90674 1.56516 1.48296 1.51728 1.46007 1.07171 1.09533 1.73968 1.21232 0.93360 0.83317 1.00963 1.21136 0.92576 0.97361 0.98531 1.21920 0.95953 1.01127 0.96193 1.21081 0.93287 0.86248 0.97940 1.44336 1.48277 1.16029 1.25006 1.19488 1.09626 1.19742 0.90321 0.91786 1.25785 0.98552 1.03443 0.96985 1.70174 1.38454 1.38270 1.11190 0.85322 0.78530 0.78628 0.78257 1.21014 1.21926 1.19736 1.20554 0.90070 0.97578 0.86608 1.21983 0.97183 0.96273 1.00808 0.91624 0.93162 0.93297 0.90468 0.90972 0.93085 0.92997 0.89142 0.90967 0.93275 0.74901 0.92337 0.92980 0.90417 0.93321 0.89549 0.96290 0.92980 0.94146 0.98289 0.93132 0.91424 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.38 5.69 30.60 0.17 -1.20 16 3 C -0.10 -1.68 4.03 30.60 0.12 -1.55 16 4 C -0.10 -1.61 2.73 -11.54 -0.03 -1.64 16 5 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.14 -1.67 8.84 71.98 0.64 -1.03 16 7 C 0.51 12.18 7.15 87.66 0.63 12.80 16 8 O -0.59 -19.76 15.92 -3.04 -0.05 -19.81 16 9 N -0.71 -15.39 5.16 -463.08 -2.39 -17.78 16 10 C 0.14 3.62 5.06 86.38 0.44 4.06 16 11 C -0.08 -2.27 2.19 -10.77 -0.02 -2.29 16 12 C -0.11 -3.40 5.25 30.67 0.16 -3.24 16 13 C 0.14 5.47 6.52 86.36 0.56 6.03 16 14 N -0.61 -30.43 2.99 -699.11 -2.09 -32.53 16 15 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16 16 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 17 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 18 N -0.93 -55.49 11.19 21.65 0.24 -55.25 16 19 Si 0.96 45.13 29.59 68.60 2.03 47.16 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.18 8.49 5.30 86.36 0.46 8.94 16 24 C -0.12 -4.50 5.36 30.67 0.16 -4.34 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.08 0.71 6.57 -2.38 -0.02 0.69 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 1.05 7.96 -2.38 -0.02 1.03 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 0.70 6.56 -2.39 -0.02 0.69 16 33 H 0.07 0.70 7.56 -2.38 -0.02 0.68 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.41 6.60 7.07 -92.70 -0.66 5.94 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.09 1.94 7.15 -2.38 -0.02 1.93 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -69.17 363.90 3.23 -65.94 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.26 Total: 12.96 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.23 Total: -0.70 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -4.24 Total: -105.55 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.17 3.23 -65.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.183 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds