Wall clock time and date at job start Tue Mar 31 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47159 * 2 1 4 4 O 1.42904 * 109.46778 * 120.00185 * 2 1 3 5 5 C 1.52997 * 109.47263 * 239.99916 * 2 1 3 6 6 N 1.46900 * 109.47029 * 173.77607 * 5 2 1 7 7 C 1.46962 * 110.99916 * 199.20529 * 6 5 2 8 8 C 1.53053 * 109.36355 * 176.80686 * 7 6 5 9 9 N 1.46960 * 109.36093 * 58.40228 * 8 7 6 10 10 C 1.46906 * 110.99523 * 176.80772 * 9 8 7 11 11 C 1.52999 * 109.47418 * 306.90784 * 10 9 8 12 12 C 1.50702 * 115.54898 * 305.68956 * 11 10 9 13 13 H 1.07998 * 120.00095 * 144.33035 * 12 11 10 14 14 C 1.37873 * 119.99946 * 324.33683 * 12 11 10 15 15 N 1.31514 * 120.00238 * 3.35790 * 14 12 11 16 16 Si 1.86804 * 120.00160 * 183.36140 * 14 12 11 17 17 H 1.48505 * 109.47161 * 94.99010 * 16 14 12 18 18 H 1.48491 * 109.47382 * 214.99465 * 16 14 12 19 19 H 1.48504 * 109.47015 * 334.99522 * 16 14 12 20 20 C 1.52995 * 117.49795 * 160.01730 * 11 10 9 21 21 C 1.52998 * 117.50011 * 91.35809 * 11 10 9 22 22 C 1.46951 * 110.87934 * 300.67421 * 9 8 7 23 23 C 1.46951 * 111.00395 * 75.40566 * 6 5 2 24 24 H 1.08994 * 109.47081 * 299.99919 * 1 2 3 25 25 H 1.09001 * 109.46859 * 60.00751 * 1 2 3 26 26 H 1.09009 * 109.46752 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47348 * 174.99518 * 3 2 1 28 28 H 1.09000 * 109.47195 * 294.99711 * 3 2 1 29 29 H 1.09000 * 109.47291 * 54.99632 * 3 2 1 30 30 H 0.96693 * 114.00335 * 59.99868 * 4 2 1 31 31 H 1.08999 * 109.47065 * 293.77197 * 5 2 1 32 32 H 1.08993 * 109.47325 * 53.77039 * 5 2 1 33 33 H 1.08997 * 109.48714 * 296.77590 * 7 6 5 34 34 H 1.09000 * 109.49026 * 56.84159 * 7 6 5 35 35 H 1.08994 * 109.48915 * 298.43312 * 8 7 6 36 36 H 1.09003 * 109.50141 * 178.37726 * 8 7 6 37 37 H 1.09000 * 109.46990 * 66.90997 * 10 9 8 38 38 H 1.08997 * 109.47145 * 186.90563 * 10 9 8 39 39 H 0.97005 * 120.00316 * 185.00923 * 15 14 12 40 40 H 1.08997 * 117.50136 * 0.02562 * 20 11 10 41 41 H 1.09011 * 117.49703 * 145.01810 * 20 11 10 42 42 H 1.08998 * 117.49993 * 214.98076 * 21 11 10 43 43 H 1.09001 * 117.50124 * 359.97438 * 21 11 10 44 44 H 1.08997 * 109.49051 * 299.35626 * 22 9 8 45 45 H 1.09000 * 109.50280 * 179.30225 * 22 9 8 46 46 H 1.09006 * 109.48801 * 303.15214 * 23 6 5 47 47 H 1.08999 * 109.49199 * 63.19591 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0401 -0.7212 -1.2492 6 7 3.5014 -0.5925 -1.3266 7 6 3.9816 -0.8540 -2.6907 8 6 5.4949 -0.6324 -2.7471 9 7 6.1539 -1.5218 -1.7804 10 6 7.6152 -1.3930 -1.8579 11 6 8.0691 -1.5953 -3.3049 12 6 7.6134 -2.8758 -3.9560 13 1 7.3586 -2.8870 -5.0054 14 6 7.5218 -4.0328 -3.2119 15 7 7.7682 -4.0054 -1.9204 16 14 7.0478 -5.6397 -4.0383 17 1 8.2763 -6.3910 -4.4012 18 1 6.2276 -6.4531 -3.1052 19 1 6.2627 -5.3524 -5.2657 20 6 9.4463 -1.0554 -3.6954 21 6 8.1799 -0.3528 -4.1909 22 6 5.6737 -1.2603 -0.4164 23 6 4.1604 -1.4818 -0.3599 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1264 1.4437 0.0897 28 1 1.7517 1.9297 -0.9314 29 1 1.6054 1.9815 0.8418 30 1 1.7210 -1.5952 1.2329 31 1 1.7706 -1.7760 -1.1952 32 1 1.5886 -0.2759 -2.1357 33 1 3.7543 -1.8841 -2.9650 34 1 3.4885 -0.1749 -3.3862 35 1 5.7201 0.4048 -2.4993 36 1 5.8579 -0.8536 -3.7509 37 1 7.9109 -0.3998 -1.5198 38 1 8.0806 -2.1465 -1.2224 39 1 7.7751 -4.8304 -1.4102 40 1 10.0293 -0.5564 -2.9213 41 1 10.0228 -1.6262 -4.4235 42 1 7.9236 -0.4616 -5.2447 43 1 7.9290 0.6087 -3.7429 44 1 5.9010 -0.2301 -0.1421 45 1 6.1668 -1.9391 0.2794 46 1 3.7977 -1.2604 0.6439 47 1 3.9348 -2.5191 -0.6075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:27 Heat of formation + Delta-G solvation = -5.473136 kcal Electronic energy + Delta-G solvation = -24260.113903 eV Core-core repulsion = 21058.042455 eV Total energy + Delta-G solvation = -3202.071448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.32839 -37.83853 -36.23772 -33.75491 -32.18405 -31.95405 -30.13132 -27.87776 -27.32333 -25.48868 -24.66886 -22.90758 -22.33608 -21.06235 -20.24502 -19.03056 -18.76345 -16.66679 -16.17214 -15.53256 -15.17255 -14.76961 -14.60640 -14.12248 -14.02818 -13.81050 -13.63172 -13.05720 -12.99111 -12.68923 -12.39582 -12.19249 -12.13377 -11.93403 -11.56186 -11.46574 -11.09291 -11.03474 -10.91661 -10.72413 -10.70683 -10.50594 -10.43274 -10.32793 -10.16707 -9.84431 -9.57034 -9.17554 -8.75928 -8.51755 -8.02293 -7.89973 -6.94402 -5.77736 -3.89271 3.34714 3.42355 3.45093 4.09900 4.31001 4.49191 4.84465 4.93535 4.94288 5.03844 5.28394 5.36980 5.49730 5.57368 5.61349 5.68821 5.79806 5.81673 5.88735 5.98908 6.01817 6.03143 6.10226 6.12706 6.24167 6.28303 6.43025 6.46190 6.52637 6.63628 6.67273 6.72551 6.74510 6.84939 6.95708 6.99353 7.27543 7.37483 7.45241 7.52965 7.66494 7.73785 8.13260 8.35076 8.42666 8.64733 9.05980 9.71600 11.17166 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.005131 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.148329 B = 5455.943213 C = 6045.808587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.132 3.868 3 C -0.124 4.124 4 O -0.553 6.553 5 C 0.030 3.970 6 N -0.530 5.530 7 C 0.058 3.942 8 C 0.064 3.936 9 N -0.491 5.491 10 C 0.110 3.890 11 C 0.063 3.937 12 C -0.478 4.478 13 H 0.052 0.948 14 C 0.088 3.912 15 N -0.863 5.863 16 Si 0.888 3.112 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.210 4.210 21 C -0.219 4.219 22 C 0.064 3.936 23 C 0.050 3.950 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.370 0.630 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.015 0.985 36 H 0.093 0.907 37 H -0.023 1.023 38 H 0.119 0.881 39 H 0.254 0.746 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.019 0.981 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.953 6.676 4.182 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.092 3.908 3 C -0.181 4.181 4 O -0.359 6.359 5 C -0.099 4.099 6 N -0.254 5.254 7 C -0.070 4.070 8 C -0.065 4.065 9 N -0.215 5.215 10 C -0.017 4.017 11 C 0.062 3.938 12 C -0.515 4.515 13 H 0.071 0.929 14 C -0.116 4.116 15 N -0.500 5.500 16 Si 0.716 3.284 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.256 4.256 22 C -0.065 4.065 23 C -0.078 4.078 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.218 0.782 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.111 0.889 37 H -0.005 1.005 38 H 0.136 0.864 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.037 0.963 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.739 7.132 4.470 14.445 hybrid contribution -0.481 -1.393 -0.757 1.657 sum -12.220 5.739 3.713 14.002 Atomic orbital electron populations 1.22479 0.96208 1.02135 1.02674 1.21257 0.91350 0.93832 0.84394 1.21544 1.03415 0.92343 1.00819 1.86575 1.76464 1.28556 1.44327 1.22755 0.90168 0.98437 0.98522 1.62171 1.03249 1.53857 1.06133 1.22230 0.96722 0.99268 0.88797 1.22137 0.91645 0.93376 0.99355 1.61897 1.06447 1.50966 1.02148 1.21824 0.86020 0.95966 0.97926 1.19025 0.92514 0.90952 0.91305 1.20289 1.44805 0.91767 0.94648 0.92943 1.24757 0.94174 0.98351 0.94300 1.69833 1.48642 1.25924 1.05599 0.86670 0.78267 0.84194 0.79251 1.21118 1.21430 1.20175 1.23007 0.92522 1.05921 1.03397 1.22967 1.05245 0.97555 0.99845 1.22003 0.93823 0.98047 0.92594 1.22512 0.94521 0.93814 0.96953 0.91793 0.91679 0.92624 0.90444 0.91886 0.93293 0.78247 0.94868 0.90683 0.94308 0.91861 0.96700 0.88857 1.00509 0.86377 0.93520 0.92000 0.90551 0.90933 0.91886 0.96320 0.91029 0.88591 0.94998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 8.81 37.16 0.33 -1.23 16 2 C 0.13 1.48 1.16 -90.62 -0.11 1.37 16 3 C -0.12 -1.45 8.52 37.15 0.32 -1.14 16 4 O -0.55 -6.60 10.05 -35.23 -0.35 -6.96 16 5 C 0.03 0.38 4.32 -3.83 -0.02 0.36 16 6 N -0.53 -8.33 3.71 -234.47 -0.87 -9.20 16 7 C 0.06 1.01 5.57 -3.76 -0.02 0.99 16 8 C 0.06 1.29 4.85 -3.76 -0.02 1.27 16 9 N -0.49 -10.86 4.24 -234.46 -0.99 -11.86 16 10 C 0.11 2.61 4.06 -3.82 -0.02 2.60 16 11 C 0.06 1.53 1.15 -155.66 -0.18 1.36 16 12 C -0.48 -12.78 8.29 -34.44 -0.29 -13.06 16 13 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 14 C 0.09 2.35 5.31 -17.82 -0.09 2.25 16 15 N -0.86 -23.33 10.18 55.43 0.56 -22.76 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.21 -4.79 9.96 -26.70 -0.27 -5.06 16 21 C -0.22 -4.79 8.19 -26.70 -0.22 -5.01 16 22 C 0.06 1.26 5.62 -3.77 -0.02 1.24 16 23 C 0.05 0.84 5.30 -3.77 -0.02 0.82 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.08 1.09 7.63 -51.93 -0.40 0.70 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.37 3.34 9.04 45.56 0.41 3.75 16 31 H 0.03 0.42 8.00 -51.93 -0.42 0.01 16 32 H 0.07 0.88 7.85 -51.93 -0.41 0.48 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 2.06 5.51 -51.93 -0.29 1.77 16 37 H -0.02 -0.54 8.09 -51.93 -0.42 -0.96 16 38 H 0.12 3.11 5.92 -51.93 -0.31 2.80 16 39 H 0.25 6.68 8.32 -40.82 -0.34 6.34 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.75 8.14 -51.92 -0.42 1.32 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.10 1.50 5.29 -51.93 -0.27 1.23 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -27.79 355.62 -9.91 -37.70 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.97 Total: 4.83 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.62 Total: -13.24 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.30 Total: -43.82 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.35 Total: -6.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.79 -9.91 -37.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.226 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds