Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47542 * 2 1 4 4 C 1.52995 * 109.47478 * 120.00374 * 2 1 3 5 5 H 1.09000 * 110.36870 * 58.39402 * 4 2 1 6 6 C 1.54381 * 110.40893 * 295.92298 * 4 2 1 7 7 C 1.54261 * 105.05561 * 217.36664 * 6 4 2 8 8 C 1.54371 * 105.06395 * 359.97438 * 7 6 4 9 9 N 1.48558 * 104.59756 * 23.85479 * 8 7 6 10 10 C 1.46897 * 111.00459 * 200.96000 * 9 8 7 11 11 C 1.53000 * 109.47082 * 285.41813 * 10 9 8 12 12 C 1.50698 * 109.47309 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99978 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00121 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99940 * 359.97438 * 14 12 11 16 16 C 1.46497 * 120.00036 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.47530 * 89.99361 * 16 14 12 18 18 H 1.07994 * 119.99767 * 359.72355 * 17 16 14 19 19 C 1.37875 * 120.00049 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00033 * 179.72712 * 19 17 16 21 21 Si 1.86806 * 120.00006 * 359.71979 * 19 17 16 22 22 H 1.48500 * 109.46903 * 90.00637 * 21 19 17 23 23 H 1.48499 * 109.47083 * 210.00465 * 21 19 17 24 24 H 1.48501 * 109.47277 * 330.00449 * 21 19 17 25 25 H 1.09006 * 109.46959 * 299.99664 * 1 2 3 26 26 H 1.09002 * 109.47463 * 59.99650 * 1 2 3 27 27 H 1.08993 * 109.47375 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46959 * 240.00336 * 2 1 3 29 29 H 1.09000 * 109.47442 * 172.85733 * 3 2 1 30 30 H 1.09006 * 109.47337 * 292.86160 * 3 2 1 31 31 H 1.09005 * 109.47206 * 52.85265 * 3 2 1 32 32 H 1.08991 * 110.32368 * 336.26086 * 6 4 2 33 33 H 1.08994 * 110.32317 * 98.47391 * 6 4 2 34 34 H 1.09001 * 110.32131 * 118.89975 * 7 6 4 35 35 H 1.09004 * 110.32491 * 241.00038 * 7 6 4 36 36 H 1.08999 * 110.41636 * 265.07494 * 8 7 6 37 37 H 1.09000 * 110.41212 * 142.63191 * 8 7 6 38 38 H 1.08999 * 109.47114 * 165.41728 * 10 9 8 39 39 H 1.09000 * 109.47092 * 45.41681 * 10 9 8 40 40 H 1.09002 * 109.46957 * 59.99528 * 11 10 9 41 41 H 1.09000 * 109.47049 * 299.99894 * 11 10 9 42 42 H 1.08994 * 109.47282 * 270.00637 * 15 14 12 43 43 H 1.09002 * 109.46913 * 30.00509 * 15 14 12 44 44 H 1.08997 * 109.46734 * 150.00533 * 15 14 12 45 45 H 1.09005 * 109.47070 * 329.99545 * 16 14 12 46 46 H 1.09001 * 109.47215 * 209.99669 * 16 14 12 47 47 H 0.96995 * 119.99897 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6616 -1.7431 1.2783 6 6 1.6232 0.0464 2.5220 7 6 2.8217 -0.0911 3.4834 8 6 3.8615 -0.9308 2.7109 9 7 3.5251 -0.7187 1.2795 10 6 4.0709 -1.7973 0.4449 11 6 5.5828 -1.6138 0.2987 12 6 6.1426 -2.7199 -0.5580 13 8 5.4050 -3.5716 -1.0070 14 7 7.4631 -2.7634 -0.8244 15 6 8.3541 -1.7350 -0.2815 16 6 8.0072 -3.8385 -1.6576 17 6 7.9858 -3.4134 -3.1033 18 1 7.6009 -2.4416 -3.3747 19 6 8.4520 -4.2677 -4.0800 20 7 8.4284 -3.8988 -5.3421 21 14 9.1173 -5.9489 -3.6105 22 1 8.0111 -6.9396 -3.6214 23 1 10.1589 -6.3592 -4.5862 24 1 9.7107 -5.8844 -2.2507 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1225 1.4451 0.1278 30 1 1.7848 1.9181 -0.9470 31 1 1.5761 1.9919 0.8192 32 1 1.4430 1.0958 2.2892 33 1 0.7325 -0.4033 2.9606 34 1 3.2297 0.8909 3.7226 35 1 2.5188 -0.6067 4.3948 36 1 3.7679 -1.9851 2.9711 37 1 4.8699 -0.5745 2.9212 38 1 3.6042 -1.7665 -0.5396 39 1 3.8654 -2.7593 0.9144 40 1 6.0494 -1.6445 1.2833 41 1 5.7882 -0.6518 -0.1708 42 1 8.4245 -0.9065 -0.9863 43 1 7.9559 -1.3729 0.6663 44 1 9.3446 -2.1605 -0.1208 45 1 7.4013 -4.7362 -1.5339 46 1 9.0333 -4.0483 -1.3557 47 1 8.7566 -4.4997 -6.0292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088836925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -41.537678 kcal Electronic energy + Delta-G solvation = -23073.794045 eV Core-core repulsion = 19870.158721 eV Total energy + Delta-G solvation = -3203.635324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82599 -38.85910 -35.10149 -34.80906 -33.15887 -32.46532 -29.78978 -28.12661 -27.85408 -27.17105 -25.86582 -23.89135 -22.55886 -21.89061 -20.60268 -19.02234 -18.24881 -16.95086 -16.59557 -16.24488 -15.34905 -15.33916 -15.22000 -14.55658 -14.50251 -13.95377 -13.72474 -13.48364 -13.08879 -12.89487 -12.48700 -12.37343 -12.26034 -12.12505 -11.96641 -11.90262 -11.80640 -11.51958 -11.40815 -11.37424 -11.04566 -10.90251 -10.86825 -10.68993 -10.50589 -10.43390 -10.31705 -10.11740 -9.52550 -8.97762 -8.56998 -8.50206 -7.66960 -6.06702 -4.05150 3.30127 3.36003 3.37675 3.39181 3.67455 4.10317 4.41114 4.44874 4.55242 4.80097 4.95315 5.02024 5.12353 5.18444 5.22368 5.26875 5.29236 5.34046 5.40618 5.49029 5.58390 5.59014 5.64065 5.69520 5.75148 5.78598 5.84740 5.89872 5.93422 5.95187 6.04114 6.09946 6.13538 6.18193 6.19733 6.31822 6.43931 6.71278 6.86046 6.96212 7.02798 7.36709 7.63460 8.27889 8.49540 8.95428 9.02195 9.53678 11.06847 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.003564 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.890557 B = 7853.537829 C = 8339.031057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.140 4.140 4 C 0.068 3.932 5 H 0.051 0.949 6 C -0.123 4.123 7 C -0.124 4.124 8 C 0.030 3.970 9 N -0.506 5.506 10 C 0.062 3.938 11 C -0.129 4.129 12 C 0.507 3.493 13 O -0.545 6.545 14 N -0.599 5.599 15 C 0.086 3.914 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.029 0.971 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 9.966 18.253 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.197 4.197 4 C -0.040 4.040 5 H 0.069 0.931 6 C -0.161 4.161 7 C -0.162 4.162 8 C -0.098 4.098 9 N -0.230 5.230 10 C -0.067 4.067 11 C -0.170 4.170 12 C 0.293 3.707 13 O -0.423 6.423 14 N -0.331 5.331 15 C -0.058 4.058 16 C 0.095 3.905 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.047 0.953 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.102 9.932 17.609 23.064 hybrid contribution 0.239 -1.664 0.261 1.701 sum -10.863 8.268 17.870 22.488 Atomic orbital electron populations 1.21842 0.95345 1.01558 1.01687 1.21004 0.94855 0.97146 0.97299 1.21785 1.02677 0.94833 1.00407 1.22640 0.88144 0.97909 0.95346 0.93135 1.22432 0.97508 1.01551 0.94584 1.22276 0.95642 1.00475 0.97792 1.23138 0.99695 0.98355 0.88620 1.65245 1.07927 1.43486 1.06292 1.21970 0.94144 0.91911 0.98654 1.21546 0.95953 0.99203 1.00265 1.20366 0.82315 0.86548 0.81445 1.90661 1.57713 1.40733 1.53218 1.47837 1.06694 1.28294 1.50306 1.21639 0.94560 0.91965 0.97589 1.19666 0.93556 0.86501 0.90825 1.21341 1.41987 1.04120 0.89167 0.90791 1.24867 0.95336 0.98102 0.94768 1.69900 1.47041 1.36882 0.99850 0.86840 0.79187 0.85004 0.78585 1.19931 1.21058 1.19112 0.92707 0.92568 0.92950 0.90986 0.90982 0.93550 0.93163 0.90295 0.91807 0.91168 0.91734 0.93896 0.90148 0.89869 0.93888 0.89882 0.88616 0.92806 0.92297 0.91537 0.94665 0.95321 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.01 37.16 0.33 -0.95 16 2 C -0.08 -0.88 2.84 -90.63 -0.26 -1.14 16 3 C -0.14 -1.40 8.66 37.16 0.32 -1.08 16 4 C 0.07 0.72 2.06 -66.08 -0.14 0.58 16 5 H 0.05 0.58 7.99 -51.93 -0.42 0.17 16 6 C -0.12 -1.05 5.39 -25.35 -0.14 -1.19 16 7 C -0.12 -1.02 7.00 -25.35 -0.18 -1.20 16 8 C 0.03 0.30 5.91 -2.19 -0.01 0.29 16 9 N -0.51 -5.90 4.16 -222.17 -0.93 -6.83 16 10 C 0.06 0.89 4.07 -3.83 -0.02 0.87 16 11 C -0.13 -1.92 4.37 -27.88 -0.12 -2.04 16 12 C 0.51 10.43 7.67 -10.99 -0.08 10.35 16 13 O -0.55 -13.56 15.56 5.55 0.09 -13.48 16 14 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 15 C 0.09 1.34 10.29 59.85 0.62 1.96 16 16 C 0.22 5.38 4.27 -5.19 -0.02 5.36 16 17 C -0.53 -15.49 9.94 -34.44 -0.34 -15.83 16 18 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 21 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.24 6.54 56.52 0.37 -5.88 16 25 H 0.05 0.42 7.37 -51.93 -0.38 0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.89 7.29 -51.93 -0.38 0.51 16 29 H 0.07 0.82 7.42 -51.93 -0.39 0.43 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.44 6.25 -51.93 -0.32 0.12 16 32 H 0.08 0.65 5.61 -51.93 -0.29 0.36 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.45 7.75 -51.93 -0.40 0.05 16 37 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 38 H 0.08 1.35 7.13 -51.93 -0.37 0.98 16 39 H 0.04 0.66 7.72 -51.93 -0.40 0.26 16 40 H 0.08 1.03 6.73 -51.93 -0.35 0.69 16 41 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 44 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 45 H 0.04 0.94 6.86 -51.93 -0.36 0.58 16 46 H 0.03 0.68 6.94 -51.93 -0.36 0.32 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -33.66 360.42 -8.50 -42.16 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.54 Total: -2.08 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -0.13 Total: -1.99 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.67 Total: -47.25 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.66 -8.50 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088836925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.624 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds