Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47305 * 2 1 4 4 C 1.52994 * 109.46926 * 120.00328 * 2 1 3 5 5 H 1.08999 * 110.42251 * 302.31009 * 4 2 1 6 6 C 1.54904 * 110.37785 * 64.62443 * 4 2 1 7 7 C 1.55141 * 101.65351 * 155.89656 * 6 4 2 8 8 C 1.54313 * 103.02301 * 324.34714 * 7 6 4 9 9 N 1.47445 * 107.23255 * 22.28064 * 8 7 6 10 10 C 1.46905 * 111.00077 * 123.25661 * 9 8 7 11 11 C 1.53003 * 109.46669 * 69.87423 * 10 9 8 12 12 C 1.50697 * 109.46624 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00521 * 359.73045 * 12 11 10 14 14 N 1.34784 * 119.99774 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99971 * 359.72768 * 14 12 11 16 16 C 1.46499 * 119.99893 * 179.72962 * 14 12 11 17 17 C 1.50697 * 109.47293 * 90.00297 * 16 14 12 18 18 H 1.07997 * 120.00010 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00091 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00149 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00247 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47226 * 89.99205 * 21 19 17 23 23 H 1.48494 * 109.47051 * 209.99874 * 21 19 17 24 24 H 1.48508 * 109.46947 * 329.99558 * 21 19 17 25 25 H 1.09007 * 109.46793 * 299.99764 * 1 2 3 26 26 H 1.08998 * 109.47169 * 59.99951 * 1 2 3 27 27 H 1.09004 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46433 * 239.99615 * 2 1 3 29 29 H 1.08994 * 109.46947 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46721 * 300.00545 * 3 2 1 31 31 H 1.08995 * 109.47153 * 59.99986 * 3 2 1 32 32 H 1.08996 * 110.99188 * 37.80823 * 6 4 2 33 33 H 1.09003 * 111.02221 * 274.00506 * 6 4 2 34 34 H 1.09001 * 110.70391 * 205.95903 * 7 6 4 35 35 H 1.09000 * 110.70552 * 82.73243 * 7 6 4 36 36 H 1.09003 * 109.88661 * 262.88061 * 8 7 6 37 37 H 1.08994 * 110.02628 * 141.76139 * 8 7 6 38 38 H 1.09001 * 109.46925 * 309.88238 * 10 9 8 39 39 H 1.08993 * 109.47365 * 189.87824 * 10 9 8 40 40 H 1.09001 * 109.46782 * 60.00727 * 11 10 9 41 41 H 1.08993 * 109.47555 * 300.00284 * 11 10 9 42 42 H 1.08999 * 109.47256 * 89.99766 * 15 14 12 43 43 H 1.08998 * 109.47416 * 209.99869 * 15 14 12 44 44 H 1.09008 * 109.47058 * 330.00468 * 15 14 12 45 45 H 1.08997 * 109.46865 * 210.00034 * 16 14 12 46 46 H 1.08998 * 109.47058 * 329.99547 * 16 14 12 47 47 H 0.96995 * 120.00744 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6520 -0.2440 2.1490 6 6 1.6331 -2.2155 1.2131 7 6 2.7078 -2.8552 2.1310 8 6 3.9701 -2.0240 1.8201 9 7 3.5183 -0.7330 1.2693 10 6 4.0429 0.3890 2.0593 11 6 5.5530 0.5040 1.8414 12 6 6.0910 1.6553 2.6514 13 8 5.3399 2.3216 3.3317 14 7 7.4061 1.9483 2.6151 15 6 8.3134 1.1438 1.7930 16 6 7.9282 3.0712 3.3978 17 6 8.3317 2.5853 4.7661 18 1 8.2109 1.5442 5.0267 19 6 8.8541 3.4700 5.6855 20 7 9.0008 4.7379 5.3683 21 14 9.3536 2.8678 7.3818 22 1 10.7754 2.4401 7.3564 23 1 9.1845 3.9663 8.3666 24 1 8.4977 1.7182 7.7708 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6976 -2.6134 0.2005 33 1 0.6335 -2.3586 1.6237 34 1 2.8623 -3.9025 1.8715 35 1 2.4285 -2.7542 3.1798 36 1 4.5857 -2.5449 1.0867 37 1 4.5419 -1.8578 2.7330 38 1 3.8406 0.2151 3.1162 39 1 3.5588 1.3131 1.7439 40 1 5.7553 0.6778 0.7846 41 1 6.0371 -0.4202 2.1569 42 1 8.3761 1.5742 0.7936 43 1 9.3040 1.1348 2.2475 44 1 7.9350 0.1237 1.7261 45 1 8.7961 3.4942 2.8920 46 1 7.1570 3.8351 3.4963 47 1 9.3686 5.3603 6.0149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088836926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = -47.578181 kcal Electronic energy + Delta-G solvation = -23123.467259 eV Core-core repulsion = 19919.570000 eV Total energy + Delta-G solvation = -3203.897260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80939 -38.70495 -34.97244 -34.74928 -33.25764 -32.53025 -29.53415 -28.14576 -27.53521 -27.09150 -25.71970 -24.02464 -22.40516 -21.63143 -20.53087 -19.71949 -18.19106 -16.78058 -16.49969 -16.18401 -15.42955 -15.17943 -14.90701 -14.59905 -14.26592 -13.86673 -13.57587 -13.43936 -13.09031 -12.74905 -12.58693 -12.37723 -12.20571 -12.15564 -12.04976 -11.79644 -11.59815 -11.54257 -11.19402 -11.16013 -11.03221 -10.93241 -10.84742 -10.66074 -10.55007 -10.49230 -10.30731 -10.14229 -9.60630 -8.84508 -8.42260 -8.31317 -7.59756 -6.02784 -4.07536 3.30404 3.36807 3.40585 3.51008 3.72127 4.17684 4.45771 4.48160 4.53912 4.83028 4.94198 4.99621 5.14458 5.23076 5.28575 5.31738 5.32089 5.38641 5.43569 5.52568 5.60388 5.65595 5.67444 5.73927 5.77099 5.82480 5.86247 5.91439 5.92055 5.97572 6.06477 6.08364 6.12307 6.19665 6.25636 6.34581 6.41689 7.00960 7.10177 7.12126 7.47386 7.58110 7.93914 8.25761 8.46993 8.92382 9.14613 9.57533 11.05268 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023861 B = 0.003541 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.197183 B = 7904.839550 C = 8193.413848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.076 3.924 5 H 0.055 0.945 6 C -0.122 4.122 7 C -0.143 4.143 8 C 0.039 3.961 9 N -0.526 5.526 10 C 0.060 3.940 11 C -0.133 4.133 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.085 3.915 16 C 0.245 3.755 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.594 -14.139 -12.223 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.208 4.208 4 C -0.032 4.032 5 H 0.073 0.927 6 C -0.160 4.160 7 C -0.182 4.182 8 C -0.089 4.089 9 N -0.250 5.250 10 C -0.068 4.068 11 C -0.173 4.173 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.697 -13.521 -12.281 22.245 hybrid contribution 0.271 -0.394 1.847 1.908 sum -12.427 -13.915 -10.433 21.375 Atomic orbital electron populations 1.21866 0.95489 1.01475 1.01728 1.21012 0.94517 0.96453 0.97654 1.21953 1.02354 0.95404 1.01123 1.22602 0.87542 0.95408 0.97618 0.92672 1.22733 0.98356 0.94698 1.00259 1.22784 0.95756 0.99854 0.99792 1.22854 0.96889 0.90187 0.98946 1.63430 1.07837 1.02165 1.51548 1.22171 0.94233 0.94652 0.95746 1.21613 0.96207 0.98183 1.01320 1.20347 0.82613 0.85569 0.82472 1.90659 1.57024 1.52213 1.42539 1.48161 1.06510 1.33001 1.45926 1.21626 0.95445 0.94515 0.94387 1.19270 0.94648 0.83832 0.89705 1.21441 1.41532 0.95343 0.98124 0.92553 1.24942 0.95751 0.94760 0.98716 1.69932 1.45300 1.02591 1.35593 0.86498 0.78644 0.78472 0.83816 1.20633 1.21067 1.19944 0.92846 0.92657 0.92784 0.90744 0.91230 0.93177 0.93028 0.90683 0.91124 0.90932 0.91616 0.90614 0.92459 0.94029 0.89227 0.89019 0.89840 0.93758 0.90919 0.92431 0.95077 0.93877 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.02 37.16 0.34 -0.88 16 2 C -0.08 -0.76 2.66 -90.62 -0.24 -1.00 16 3 C -0.15 -1.67 7.82 37.16 0.29 -1.38 16 4 C 0.08 0.82 2.10 -66.19 -0.14 0.68 16 5 H 0.06 0.66 7.81 -51.93 -0.41 0.25 16 6 C -0.12 -1.07 5.57 -24.59 -0.14 -1.21 16 7 C -0.14 -1.30 6.94 -24.91 -0.17 -1.47 16 8 C 0.04 0.42 6.21 -2.84 -0.02 0.40 16 9 N -0.53 -6.30 4.50 -223.38 -1.01 -7.31 16 10 C 0.06 0.88 3.22 -3.82 -0.01 0.87 16 11 C -0.13 -2.03 4.29 -27.88 -0.12 -2.15 16 12 C 0.50 10.66 7.67 -10.98 -0.08 10.58 16 13 O -0.55 -13.94 15.56 5.56 0.09 -13.86 16 14 N -0.60 -13.12 2.86 -182.96 -0.52 -13.64 16 15 C 0.08 1.37 10.24 59.85 0.61 1.98 16 16 C 0.24 6.55 5.16 -5.20 -0.03 6.52 16 17 C -0.53 -15.19 9.39 -34.44 -0.32 -15.52 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.39 7.33 -51.93 -0.38 0.01 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.87 6.16 -51.93 -0.32 0.55 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.60 7.95 -51.93 -0.41 0.19 16 32 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 33 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 38 H 0.04 0.69 7.92 -51.93 -0.41 0.28 16 39 H 0.09 1.40 5.24 -51.93 -0.27 1.13 16 40 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 41 H 0.08 1.16 6.39 -51.93 -0.33 0.83 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.06 0.77 6.44 -51.92 -0.33 0.43 16 45 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -32.63 363.96 -9.01 -41.64 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -8.63 Total: -2.27 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.13 Total: -0.91 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.79 Total: -47.18 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.63 -9.01 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088836926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.940 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds