Wall clock time and date at job start Tue Mar 31 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99715 * 2 1 4 4 O 1.21273 * 120.00416 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99476 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.50381 * 300.07599 * 5 3 2 7 7 C 1.53115 * 109.53860 * 60.17532 * 5 3 2 8 8 C 1.53116 * 109.15979 * 177.61378 * 7 5 3 9 9 C 1.53040 * 109.28212 * 302.34564 * 8 7 5 10 10 N 1.46843 * 109.51968 * 59.17792 * 9 8 7 11 11 C 1.46903 * 111.00071 * 174.16371 * 10 9 8 12 12 C 1.53002 * 109.47313 * 210.99385 * 11 10 9 13 13 C 1.52996 * 109.46943 * 54.58754 * 12 11 10 14 14 C 1.52999 * 109.46757 * 294.58839 * 12 11 10 15 15 C 1.52996 * 109.46925 * 174.58733 * 12 11 10 16 16 C 1.50698 * 109.46911 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00298 * 0.02562 * 16 15 12 18 18 C 1.37885 * 120.00230 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99574 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46803 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47565 * 60.00114 * 20 18 16 23 23 H 1.48500 * 109.46991 * 299.99664 * 20 18 16 24 24 C 1.46850 * 111.20265 * 298.25979 * 10 9 8 25 25 H 1.08998 * 109.46701 * 59.99953 * 1 2 3 26 26 H 1.08998 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47365 * 300.00159 * 1 2 3 28 28 H 0.97001 * 120.00101 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.52459 * 297.51923 * 7 5 3 30 30 H 1.09001 * 109.52039 * 57.70673 * 7 5 3 31 31 H 1.09001 * 109.50521 * 62.29139 * 8 7 5 32 32 H 1.09007 * 109.50046 * 182.36563 * 8 7 5 33 33 H 1.08999 * 109.45976 * 299.16633 * 9 8 7 34 34 H 1.09000 * 109.46328 * 179.19748 * 9 8 7 35 35 H 1.08996 * 109.47253 * 90.99236 * 11 10 9 36 36 H 1.09006 * 109.46706 * 330.99096 * 11 10 9 37 37 H 1.09003 * 109.47121 * 185.51845 * 13 12 11 38 38 H 1.08998 * 109.47401 * 305.51387 * 13 12 11 39 39 H 1.08998 * 109.47465 * 65.51471 * 13 12 11 40 40 H 1.08997 * 109.47175 * 313.21210 * 14 12 11 41 41 H 1.08995 * 109.47443 * 73.22204 * 14 12 11 42 42 H 1.09002 * 109.46526 * 193.21818 * 14 12 11 43 43 H 1.08998 * 109.47228 * 59.99906 * 15 12 11 44 44 H 1.09003 * 109.47434 * 299.99569 * 15 12 11 45 45 H 0.97001 * 120.00225 * 359.97438 * 19 18 16 46 46 H 1.08999 * 109.46287 * 181.75585 * 24 10 9 47 47 H 1.08994 * 109.45848 * 301.72975 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0101 0.6520 0.8883 7 6 4.1575 0.4498 -1.2528 8 6 5.6874 0.5068 -1.2749 9 6 6.1392 1.9685 -1.2379 10 7 5.6252 2.6103 -0.0213 11 6 6.1531 3.9741 0.1178 12 6 6.2812 4.3226 1.6021 13 6 7.1262 3.2581 2.3047 14 6 4.8898 4.3700 2.2366 15 6 6.9556 5.6880 1.7490 16 6 7.0823 6.0309 3.2109 17 1 6.7186 5.3436 3.9603 18 6 7.6626 7.2223 3.5918 19 7 8.1059 8.0591 2.6793 20 14 7.8203 7.6470 5.4040 21 1 8.4748 8.9724 5.5466 22 1 8.6417 6.6141 6.0849 23 1 6.4704 7.6921 6.0211 24 6 4.1568 2.6098 -0.0004 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9501 -0.8400 0.0004 29 1 3.8319 -0.5903 -1.2353 30 1 3.7617 0.9414 -2.1415 31 1 6.0838 -0.0188 -0.4061 32 1 6.0560 0.0343 -2.1855 33 1 5.7540 2.4900 -2.1141 34 1 7.2284 2.0121 -1.2391 35 1 5.4735 4.6776 -0.3632 36 1 7.1332 4.0343 -0.3555 37 1 7.1362 3.4519 3.3773 38 1 6.6988 2.2731 2.1176 39 1 8.1455 3.2910 1.9200 40 1 4.2195 4.9474 1.5999 41 1 4.5048 3.3560 2.3445 42 1 4.9539 4.8405 3.2178 43 1 6.3536 6.4463 1.2483 44 1 7.9469 5.6542 1.2969 45 1 8.0250 7.8380 1.7383 46 1 3.8062 3.1192 0.8972 47 1 3.7810 3.1282 -0.8824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093361405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:15 Heat of formation + Delta-G solvation = -56.185778 kcal Electronic energy + Delta-G solvation = -23611.800426 eV Core-core repulsion = 20407.529913 eV Total energy + Delta-G solvation = -3204.270513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37032 -38.64152 -36.36718 -34.82376 -33.24269 -31.96733 -31.07400 -27.41824 -26.50423 -26.37851 -26.06853 -23.76028 -23.14257 -22.14954 -20.71861 -19.72635 -18.26144 -17.32803 -16.31965 -16.22039 -15.68421 -15.30430 -14.84449 -14.54651 -14.38739 -13.89159 -13.64780 -13.41634 -13.31069 -13.03791 -12.76384 -12.59201 -12.52950 -12.41894 -11.74285 -11.50820 -11.45025 -11.10645 -11.05371 -10.90578 -10.79398 -10.71540 -10.53015 -10.27839 -10.03487 -9.85637 -9.80502 -9.64513 -9.36338 -9.10381 -8.36946 -8.21388 -7.94994 -6.23196 -3.90191 2.51130 2.98459 3.50051 3.52149 3.70303 4.11298 4.47841 4.62140 4.64306 4.73326 4.86809 5.09317 5.12221 5.22714 5.31954 5.44186 5.50537 5.52069 5.53998 5.60597 5.62298 5.76246 5.82756 5.90964 5.98668 6.03507 6.11362 6.16927 6.20556 6.28824 6.33444 6.58462 6.70418 6.80949 6.87671 7.19833 7.22862 7.23762 7.29599 7.37056 7.45409 7.53058 7.69946 8.06157 8.37671 8.59959 9.02018 9.80077 11.16768 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.003913 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.031364 B = 7153.858121 C = 7859.801306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.739 5.739 3 C 0.517 3.483 4 O -0.534 6.534 5 C -0.104 4.104 6 H 0.106 0.894 7 C -0.109 4.109 8 C -0.113 4.113 9 C 0.051 3.949 10 N -0.530 5.530 11 C 0.066 3.934 12 C -0.045 4.045 13 C -0.112 4.112 14 C -0.131 4.131 15 C 0.020 3.980 16 C -0.585 4.585 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.919 5.919 20 Si 1.065 2.935 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.060 3.940 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.401 0.599 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.002 0.998 44 H 0.004 0.996 45 H 0.267 0.733 46 H 0.103 0.897 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 -20.558 -8.420 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.391 5.391 3 C 0.304 3.696 4 O -0.410 6.410 5 C -0.125 4.125 6 H 0.124 0.876 7 C -0.147 4.147 8 C -0.151 4.151 9 C -0.077 4.077 10 N -0.254 5.254 11 C -0.061 4.061 12 C -0.046 4.046 13 C -0.169 4.169 14 C -0.188 4.188 15 C -0.018 4.018 16 C -0.623 4.623 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.894 3.106 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.216 1.216 24 C -0.068 4.068 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.078 0.922 46 H 0.121 0.879 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.844 -18.886 -6.976 22.411 hybrid contribution -0.692 -1.133 -1.853 2.280 sum -10.537 -20.019 -8.828 24.285 Atomic orbital electron populations 1.21518 0.79840 1.01993 1.02363 1.45835 1.07634 1.08844 1.76816 1.20783 0.90240 0.83448 0.75178 1.90723 1.70503 1.31286 1.48441 1.21357 0.90304 0.99871 1.01005 0.87617 1.21553 0.96860 0.99626 0.96623 1.21562 0.94441 0.96808 1.02279 1.22151 1.00078 0.94258 0.91239 1.61876 1.06991 1.20183 1.36341 1.22327 0.98498 0.86534 0.98744 1.20421 0.95616 0.97324 0.91194 1.21552 0.98051 0.97212 1.00120 1.21961 0.95879 0.99182 1.01803 1.19260 0.94230 0.90580 0.97683 1.22025 1.42491 1.06004 0.91811 0.92905 1.25774 0.93968 0.93295 1.06158 1.70771 1.44691 1.37834 1.02269 0.83597 0.76327 0.76112 0.74564 1.20985 1.21565 1.21575 1.22256 0.87600 0.93553 1.03359 0.92363 0.90816 0.92209 0.76546 0.91684 0.91888 0.90746 0.91459 0.95421 0.90651 0.94814 0.91768 0.93045 0.93355 0.94568 0.94505 0.93919 0.91487 0.97944 0.97785 0.92242 0.87891 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.70 59.85 0.64 1.28 16 2 N -0.74 -6.20 5.62 -67.08 -0.38 -6.58 16 3 C 0.52 6.35 7.16 -10.98 -0.08 6.27 16 4 O -0.53 -8.94 15.98 5.56 0.09 -8.85 16 5 C -0.10 -1.17 2.69 -91.69 -0.25 -1.42 16 6 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.11 -0.96 5.16 -26.61 -0.14 -1.10 16 8 C -0.11 -1.05 6.09 -26.65 -0.16 -1.21 16 9 C 0.05 0.62 5.36 -3.83 -0.02 0.60 16 10 N -0.53 -7.86 3.40 -234.67 -0.80 -8.66 16 11 C 0.07 1.18 4.24 -3.82 -0.02 1.17 16 12 C -0.04 -0.93 0.61 -154.51 -0.09 -1.03 16 13 C -0.11 -2.23 7.95 37.16 0.30 -1.93 16 14 C -0.13 -2.67 6.87 37.16 0.26 -2.41 16 15 C 0.02 0.51 3.35 -27.89 -0.09 0.42 16 16 C -0.58 -16.51 7.53 -34.44 -0.26 -16.76 16 17 H 0.05 1.47 5.78 -52.49 -0.30 1.16 16 18 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 19 N -0.92 -28.67 13.65 55.43 0.76 -27.91 16 20 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.06 0.89 3.50 -3.83 -0.01 0.88 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.40 2.13 8.31 -40.82 -0.34 1.79 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 35 H 0.03 0.63 7.77 -51.93 -0.40 0.22 16 36 H 0.06 1.14 7.62 -51.93 -0.40 0.74 16 37 H 0.05 1.09 6.81 -51.93 -0.35 0.74 16 38 H 0.05 0.85 7.27 -51.93 -0.38 0.48 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.74 7.67 -51.93 -0.40 0.34 16 41 H 0.04 0.78 6.29 -51.93 -0.33 0.45 16 42 H 0.07 1.50 6.30 -51.93 -0.33 1.17 16 43 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 44 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 45 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 46 H 0.10 1.74 4.14 -51.93 -0.21 1.52 16 47 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -33.42 354.66 -8.49 -41.91 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.39 Total: -1.01 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.03 Total: -15.02 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.42 Total: -43.15 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.42 -8.49 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093361405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.273 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds