Wall clock time and date at job start Tue Mar 31 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99715 * 2 1 4 4 O 1.21273 * 120.00416 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99476 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.50381 * 300.07599 * 5 3 2 7 7 C 1.53115 * 109.53860 * 60.17532 * 5 3 2 8 8 C 1.53116 * 109.15979 * 177.61378 * 7 5 3 9 9 C 1.53040 * 109.28212 * 302.34564 * 8 7 5 10 10 N 1.46843 * 109.51968 * 59.17792 * 9 8 7 11 11 C 1.46903 * 111.00071 * 174.16371 * 10 9 8 12 12 C 1.53002 * 109.47313 * 210.99385 * 11 10 9 13 13 C 1.52996 * 109.46943 * 54.58754 * 12 11 10 14 14 C 1.52999 * 109.46757 * 294.58839 * 12 11 10 15 15 C 1.52996 * 109.46925 * 174.58733 * 12 11 10 16 16 C 1.50698 * 109.46911 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00298 * 0.02562 * 16 15 12 18 18 C 1.37885 * 120.00230 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99574 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46803 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47565 * 60.00114 * 20 18 16 23 23 H 1.48500 * 109.46991 * 299.99664 * 20 18 16 24 24 C 1.46850 * 111.20265 * 298.25979 * 10 9 8 25 25 H 1.08998 * 109.46701 * 59.99953 * 1 2 3 26 26 H 1.08998 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47365 * 300.00159 * 1 2 3 28 28 H 0.97001 * 120.00101 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.52459 * 297.51923 * 7 5 3 30 30 H 1.09001 * 109.52039 * 57.70673 * 7 5 3 31 31 H 1.09001 * 109.50521 * 62.29139 * 8 7 5 32 32 H 1.09007 * 109.50046 * 182.36563 * 8 7 5 33 33 H 1.08999 * 109.45976 * 299.16633 * 9 8 7 34 34 H 1.09000 * 109.46328 * 179.19748 * 9 8 7 35 35 H 1.08996 * 109.47253 * 90.99236 * 11 10 9 36 36 H 1.09006 * 109.46706 * 330.99096 * 11 10 9 37 37 H 1.09003 * 109.47121 * 185.51845 * 13 12 11 38 38 H 1.08998 * 109.47401 * 305.51387 * 13 12 11 39 39 H 1.08998 * 109.47465 * 65.51471 * 13 12 11 40 40 H 1.08997 * 109.47175 * 313.21210 * 14 12 11 41 41 H 1.08995 * 109.47443 * 73.22204 * 14 12 11 42 42 H 1.09002 * 109.46526 * 193.21818 * 14 12 11 43 43 H 1.08998 * 109.47228 * 59.99906 * 15 12 11 44 44 H 1.09003 * 109.47434 * 299.99569 * 15 12 11 45 45 H 0.97001 * 120.00225 * 359.97438 * 19 18 16 46 46 H 1.08999 * 109.46287 * 181.75585 * 24 10 9 47 47 H 1.08994 * 109.45848 * 301.72975 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0101 0.6520 0.8883 7 6 4.1575 0.4498 -1.2528 8 6 5.6874 0.5068 -1.2749 9 6 6.1392 1.9685 -1.2379 10 7 5.6252 2.6103 -0.0213 11 6 6.1531 3.9741 0.1178 12 6 6.2812 4.3226 1.6021 13 6 7.1262 3.2581 2.3047 14 6 4.8898 4.3700 2.2366 15 6 6.9556 5.6880 1.7490 16 6 7.0823 6.0309 3.2109 17 1 6.7186 5.3436 3.9603 18 6 7.6626 7.2223 3.5918 19 7 8.1059 8.0591 2.6793 20 14 7.8203 7.6470 5.4040 21 1 8.4748 8.9724 5.5466 22 1 8.6417 6.6141 6.0849 23 1 6.4704 7.6921 6.0211 24 6 4.1568 2.6098 -0.0004 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9501 -0.8400 0.0004 29 1 3.8319 -0.5903 -1.2353 30 1 3.7617 0.9414 -2.1415 31 1 6.0838 -0.0188 -0.4061 32 1 6.0560 0.0343 -2.1855 33 1 5.7540 2.4900 -2.1141 34 1 7.2284 2.0121 -1.2391 35 1 5.4735 4.6776 -0.3632 36 1 7.1332 4.0343 -0.3555 37 1 7.1362 3.4519 3.3773 38 1 6.6988 2.2731 2.1176 39 1 8.1455 3.2910 1.9200 40 1 4.2195 4.9474 1.5999 41 1 4.5048 3.3560 2.3445 42 1 4.9539 4.8405 3.2178 43 1 6.3536 6.4463 1.2483 44 1 7.9469 5.6542 1.2969 45 1 8.0250 7.8380 1.7383 46 1 3.8062 3.1192 0.8972 47 1 3.7810 3.1282 -0.8824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093361405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:15 Heat of formation + Delta-G solvation = -78.980607 kcal Electronic energy + Delta-G solvation = -23612.788884 eV Core-core repulsion = 20407.529913 eV Total energy + Delta-G solvation = -3205.258971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37037 -39.87839 -37.84544 -35.69738 -34.97557 -33.49140 -32.08896 -28.57875 -28.49791 -27.75901 -27.39589 -25.24676 -24.40986 -23.54130 -21.64746 -20.65334 -19.98325 -18.45162 -18.28039 -17.15148 -16.79599 -16.35612 -16.15088 -15.81239 -15.61253 -15.27698 -15.12223 -14.69508 -14.54933 -14.36211 -14.04568 -13.87822 -13.60635 -13.37485 -13.32275 -13.11163 -12.86579 -12.61177 -12.45915 -12.37905 -12.32998 -11.96018 -11.91779 -11.79396 -11.61497 -11.40430 -11.39382 -10.89576 -10.79430 -10.48139 -10.40526 -10.14588 -9.25378 -8.59760 -6.27203 1.52768 1.58793 1.61752 1.79917 2.19624 2.60121 2.98457 3.23357 3.60529 3.77387 3.88355 3.99606 4.16215 4.20279 4.23736 4.31256 4.35577 4.48176 4.59064 4.59773 4.61608 4.65510 4.73404 4.77337 4.88868 4.92769 4.94240 4.98251 4.98993 5.08303 5.10541 5.14189 5.17587 5.33729 5.38758 5.41340 5.44631 5.54017 5.62483 5.72887 6.03169 6.14582 6.22799 6.28811 6.53258 6.67972 7.24619 7.52545 8.80330 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.003913 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.031364 B = 7153.858121 C = 7859.801306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.719 5.719 3 C 0.514 3.486 4 O -0.590 6.590 5 C -0.096 4.096 6 H 0.122 0.878 7 C -0.103 4.103 8 C -0.105 4.105 9 C 0.044 3.956 10 N -0.524 5.524 11 C 0.076 3.924 12 C -0.043 4.043 13 C -0.100 4.100 14 C -0.119 4.119 15 C 0.024 3.976 16 C -0.589 4.589 17 H 0.058 0.942 18 C -0.046 4.046 19 N -0.946 5.946 20 Si 1.113 2.887 21 H -0.287 1.287 22 H -0.267 1.267 23 H -0.272 1.272 24 C 0.063 3.937 25 H 0.047 0.953 26 H 0.114 0.886 27 H 0.045 0.955 28 H 0.420 0.580 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.017 0.983 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.067 0.933 42 H 0.043 0.957 43 H -0.027 1.027 44 H -0.017 1.017 45 H 0.252 0.748 46 H 0.078 0.922 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.491 -24.355 -8.052 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.372 5.372 3 C 0.300 3.700 4 O -0.470 6.470 5 C -0.117 4.117 6 H 0.140 0.860 7 C -0.141 4.141 8 C -0.143 4.143 9 C -0.084 4.084 10 N -0.247 5.247 11 C -0.052 4.052 12 C -0.043 4.043 13 C -0.157 4.157 14 C -0.176 4.176 15 C -0.013 4.013 16 C -0.627 4.627 17 H 0.076 0.924 18 C -0.242 4.242 19 N -0.585 5.585 20 Si 0.935 3.065 21 H -0.213 1.213 22 H -0.192 1.192 23 H -0.197 1.197 24 C -0.066 4.066 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.063 0.937 28 H 0.257 0.743 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.062 0.938 43 H -0.009 1.009 44 H 0.001 0.999 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -10.247 -22.773 -6.626 25.837 hybrid contribution -0.615 0.014 -2.039 2.130 sum -10.863 -22.760 -8.665 26.666 Atomic orbital electron populations 1.21665 0.79009 1.04283 1.01156 1.45708 1.08230 1.08529 1.74701 1.20991 0.90687 0.83666 0.74626 1.90709 1.71489 1.33431 1.51336 1.21297 0.89724 0.97559 1.03157 0.86031 1.21577 0.96530 1.01307 0.94642 1.21553 0.94524 0.94214 1.03960 1.22332 1.00211 0.96244 0.89583 1.61852 1.07028 1.17682 1.38172 1.22049 0.98387 0.88474 0.96332 1.20325 0.95514 0.94886 0.93625 1.21437 0.97640 0.98014 0.98642 1.21840 0.95479 1.00268 1.00007 1.19185 0.93064 0.92923 0.96141 1.22384 1.41367 1.05903 0.93017 0.92408 1.27343 0.93397 0.93580 1.09898 1.70912 1.46897 1.38871 1.01838 0.82983 0.77467 0.76233 0.69799 1.21301 1.19220 1.19705 1.22137 0.87314 0.96000 1.01121 0.93452 0.86717 0.93656 0.74276 0.87850 0.92824 0.89921 0.88927 0.95949 0.90445 0.96503 0.91798 0.94669 0.90546 0.95123 0.95464 0.91420 0.93807 1.00865 0.99860 0.93882 0.90425 0.96898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.40 16 2 N -0.72 -9.98 5.62 -484.52 -2.72 -12.70 16 3 C 0.51 11.84 7.16 87.66 0.63 12.47 16 4 O -0.59 -20.00 15.98 -3.01 -0.05 -20.05 16 5 C -0.10 -1.94 2.69 -11.49 -0.03 -1.97 16 6 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 7 C -0.10 -1.44 5.16 30.67 0.16 -1.28 16 8 C -0.10 -1.53 6.09 30.65 0.19 -1.34 16 9 C 0.04 0.99 5.36 86.33 0.46 1.45 16 10 N -0.52 -15.02 3.40 -896.35 -3.04 -18.07 16 11 C 0.08 2.77 4.24 86.30 0.37 3.13 16 12 C -0.04 -1.81 0.61 -52.18 -0.03 -1.85 16 13 C -0.10 -3.90 7.95 71.98 0.57 -3.32 16 14 C -0.12 -4.93 6.87 71.98 0.49 -4.43 16 15 C 0.02 1.31 3.35 29.85 0.10 1.41 16 16 C -0.59 -33.99 7.53 25.60 0.19 -33.80 16 17 H 0.06 3.23 5.78 -2.91 -0.02 3.22 16 18 C -0.05 -2.75 5.46 84.66 0.46 -2.29 16 19 N -0.95 -60.98 13.65 21.45 0.29 -60.69 16 20 Si 1.11 52.06 29.90 68.60 2.05 54.12 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 C 0.06 1.82 3.50 86.33 0.30 2.13 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.42 2.58 8.31 -92.71 -0.77 1.81 16 29 H 0.10 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 1.72 7.90 -2.39 -0.02 1.71 16 35 H 0.02 0.66 7.77 -2.39 -0.02 0.64 16 36 H 0.06 2.32 7.62 -2.38 -0.02 2.30 16 37 H 0.03 1.46 6.81 -2.39 -0.02 1.44 16 38 H 0.08 2.53 7.27 -2.39 -0.02 2.51 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.03 1.14 7.67 -2.39 -0.02 1.12 16 41 H 0.07 2.44 6.29 -2.39 -0.02 2.43 16 42 H 0.04 1.98 6.30 -2.39 -0.02 1.97 16 43 H -0.03 -1.59 8.01 -2.39 -0.02 -1.61 16 44 H -0.02 -0.97 8.01 -2.39 -0.02 -0.99 16 45 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 46 H 0.08 2.65 4.14 -2.39 -0.01 2.64 16 47 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 Total: -1.00 -76.71 354.66 2.03 -74.68 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.27 Total: 10.00 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 5.23 Total: -27.29 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -5.47 Total: -91.46 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.12 kcal Total: -76.71 2.03 -74.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093361405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.298 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds