Wall clock time and date at job start Tue Mar 31 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00266 * 2 1 4 4 O 1.21280 * 119.99958 * 359.71903 * 3 2 1 5 5 C 1.50700 * 119.99903 * 179.72037 * 3 2 1 6 6 H 1.08999 * 109.50593 * 59.99924 * 5 3 2 7 7 C 1.53118 * 109.50670 * 299.91807 * 5 3 2 8 8 C 1.53120 * 109.16177 * 182.40440 * 7 5 3 9 9 C 1.53033 * 109.27603 * 57.65568 * 8 7 5 10 10 N 1.46844 * 109.52647 * 300.82025 * 9 8 7 11 11 C 1.46898 * 111.00244 * 185.84454 * 10 9 8 12 12 C 1.53008 * 109.46673 * 278.86434 * 11 10 9 13 13 C 1.52996 * 109.47012 * 285.28656 * 12 11 10 14 14 C 1.52998 * 109.47230 * 45.29006 * 12 11 10 15 15 C 1.53001 * 109.46848 * 165.29116 * 12 11 10 16 16 C 1.50699 * 109.47026 * 179.97438 * 15 12 11 17 17 H 1.07996 * 119.99947 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00014 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99909 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46853 * 90.00670 * 20 18 16 22 22 H 1.48500 * 109.46989 * 210.00348 * 20 18 16 23 23 H 1.48502 * 109.47395 * 330.00732 * 20 18 16 24 24 C 1.46851 * 111.23181 * 61.72168 * 10 9 8 25 25 H 1.08997 * 109.47374 * 180.27514 * 1 2 3 26 26 H 1.08996 * 109.47115 * 300.28258 * 1 2 3 27 27 H 1.09006 * 109.46828 * 60.27816 * 1 2 3 28 28 H 0.97003 * 119.99978 * 179.71420 * 2 1 3 29 29 H 1.09005 * 109.52140 * 302.31473 * 7 5 3 30 30 H 1.09001 * 109.52324 * 62.49822 * 7 5 3 31 31 H 1.09001 * 109.49671 * 177.59348 * 8 7 5 32 32 H 1.08995 * 109.50044 * 297.71415 * 8 7 5 33 33 H 1.09005 * 109.46155 * 60.83793 * 9 8 7 34 34 H 1.08998 * 109.46054 * 180.81045 * 9 8 7 35 35 H 1.08999 * 109.47346 * 38.86144 * 11 10 9 36 36 H 1.09000 * 109.47232 * 158.86850 * 11 10 9 37 37 H 1.09004 * 109.47276 * 73.27189 * 13 12 11 38 38 H 1.09001 * 109.47350 * 193.26745 * 13 12 11 39 39 H 1.09001 * 109.47378 * 313.27045 * 13 12 11 40 40 H 1.08998 * 109.46974 * 54.11120 * 14 12 11 41 41 H 1.08997 * 109.47439 * 174.11205 * 14 12 11 42 42 H 1.09000 * 109.46776 * 294.11346 * 14 12 11 43 43 H 1.09005 * 109.47028 * 299.99885 * 15 12 11 44 44 H 1.08999 * 109.47219 * 59.99708 * 15 12 11 45 45 H 0.97004 * 120.00152 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.49463 * 178.28607 * 24 10 9 47 47 H 1.08993 * 109.42693 * 58.32098 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0052 5 6 3.6459 1.1671 0.0064 6 1 4.0136 0.6512 -0.8806 7 6 4.1519 0.4503 1.2612 8 6 5.6817 0.5072 1.2902 9 6 6.1336 1.9689 1.2545 10 7 5.6251 2.6102 0.0354 11 6 6.1538 3.9739 -0.1019 12 6 5.3360 4.9281 0.7710 13 6 3.9789 5.1848 0.1128 14 6 5.1235 4.3017 2.1506 15 6 6.0880 6.2519 0.9221 16 6 5.2823 7.1920 1.7813 17 1 4.3295 6.8766 2.1800 18 6 5.7621 8.4543 2.0593 19 7 6.9227 8.8382 1.5741 20 14 4.7631 9.6198 3.1237 21 1 5.1386 9.4338 4.5483 22 1 5.0399 11.0211 2.7177 23 1 3.3167 9.3309 2.9513 24 6 4.1569 2.6096 0.0069 25 1 -0.3634 -1.0276 0.0049 26 1 -0.3633 0.5182 0.8874 27 1 -0.3633 0.5095 -0.8925 28 1 1.9500 -0.8401 0.0042 29 1 3.7521 0.9423 2.1480 30 1 3.8263 -0.5898 1.2428 31 1 6.0461 0.0358 2.2030 32 1 6.0819 -0.0187 0.4234 33 1 5.7445 2.4907 2.1288 34 1 7.2227 2.0125 1.2605 35 1 7.1960 3.9933 0.2164 36 1 6.0862 4.2866 -1.1439 37 1 3.3515 4.2994 0.2164 38 1 3.4943 6.0321 0.5979 39 1 4.1238 5.4056 -0.9447 40 1 6.0878 4.0230 2.5754 41 1 4.6328 5.0221 2.8050 42 1 4.4986 3.4139 2.0542 43 1 7.0549 6.0691 1.3910 44 1 6.2394 6.6981 -0.0608 45 1 7.2601 9.7264 1.7694 46 1 3.8103 3.1180 -0.8928 47 1 3.7771 3.1292 0.8866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093361406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:19 Heat of formation + Delta-G solvation = -32.581379 kcal Electronic energy + Delta-G solvation = -24159.445052 eV Core-core repulsion = 20956.198102 eV Total energy + Delta-G solvation = -3203.246950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86464 -40.25789 -37.28117 -35.62394 -34.80478 -33.21605 -32.15844 -29.19361 -28.54297 -28.44271 -27.30450 -25.11551 -24.20657 -23.35688 -21.53632 -20.61131 -19.83348 -18.30278 -18.23616 -17.12766 -16.61665 -16.45508 -16.42076 -15.98674 -15.72177 -15.30505 -15.08954 -14.60452 -14.40246 -14.12426 -14.04705 -13.79600 -13.50271 -13.37613 -13.13197 -13.07505 -12.79721 -12.66312 -12.50883 -12.29685 -12.23950 -12.04902 -11.74100 -11.64997 -11.51872 -11.44524 -11.19835 -10.93641 -10.80317 -10.69923 -10.53676 -10.08839 -8.84113 -8.16549 -6.24292 1.35867 1.36903 1.47737 1.65849 2.27097 2.40136 3.15140 3.15972 3.68992 3.85761 3.93792 4.08139 4.15372 4.23283 4.29630 4.33050 4.49381 4.52772 4.63854 4.65641 4.72079 4.76149 4.82171 4.87419 4.88695 4.96465 4.98090 5.02988 5.08297 5.09897 5.18299 5.19803 5.26368 5.42921 5.46345 5.47752 5.50806 5.53708 5.59644 5.79190 5.88583 6.18879 6.28809 6.34635 6.59213 6.89521 7.31235 7.42485 8.94603 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.004513 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.298515 B = 6202.370422 C = 6960.736491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.512 3.488 4 O -0.585 6.585 5 C -0.100 4.100 6 H 0.120 0.880 7 C -0.105 4.105 8 C -0.105 4.105 9 C 0.010 3.990 10 N -0.523 5.523 11 C 0.072 3.928 12 C -0.083 4.083 13 C -0.153 4.153 14 C -0.137 4.137 15 C 0.045 3.955 16 C -0.517 4.517 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.052 3.948 25 H 0.113 0.887 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.419 0.581 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.076 0.924 43 H -0.011 1.011 44 H -0.016 1.016 45 H 0.261 0.739 46 H 0.063 0.937 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 -25.115 -1.714 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.373 5.373 3 C 0.299 3.701 4 O -0.465 6.465 5 C -0.122 4.122 6 H 0.138 0.862 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.117 4.117 10 N -0.246 5.246 11 C -0.056 4.056 12 C -0.084 4.084 13 C -0.210 4.210 14 C -0.193 4.193 15 C 0.008 3.992 16 C -0.555 4.555 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.779 3.221 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.194 1.194 24 C -0.075 4.075 25 H 0.132 0.868 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.256 0.744 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.007 0.993 44 H 0.003 0.997 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.755 -24.537 -2.134 25.821 hybrid contribution -0.240 1.768 0.963 2.028 sum -7.996 -22.768 -1.171 24.160 Atomic orbital electron populations 1.21650 0.79136 1.04168 1.01136 1.45707 1.08140 1.08571 1.74894 1.21020 0.90727 0.83669 0.74684 1.90724 1.71431 1.33275 1.51055 1.21379 0.89712 0.98264 1.02829 0.86192 1.21586 0.96610 1.01237 0.94865 1.21542 0.94507 0.94646 1.03540 1.22956 1.00247 0.96259 0.92281 1.62228 1.07376 1.17109 1.37890 1.22183 0.97743 0.86810 0.98872 1.21069 0.95887 0.96027 0.95417 1.22607 0.97246 1.02298 0.98847 1.22381 1.00702 0.99650 0.96549 1.18935 0.94044 0.91849 0.94395 1.21586 1.04963 0.98754 1.30221 0.92416 1.25868 0.96123 1.00092 0.97698 1.70095 1.20499 1.20029 1.46945 0.85620 0.79194 0.78134 0.79179 1.19784 1.20840 1.19351 1.22658 0.88006 0.95059 1.01800 0.86838 0.93642 0.93548 0.74372 0.92895 0.88031 0.89416 0.90188 0.92421 0.91058 0.91660 0.91805 0.89379 0.94703 0.94417 0.92862 0.94330 0.90633 0.99273 0.99732 0.93043 0.91834 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.70 127.77 1.37 2.46 16 2 N -0.72 -10.36 5.62 -484.53 -2.72 -13.08 16 3 C 0.51 11.99 7.16 87.66 0.63 12.62 16 4 O -0.59 -19.96 15.98 -3.03 -0.05 -20.01 16 5 C -0.10 -2.06 2.69 -11.49 -0.03 -2.09 16 6 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 7 C -0.11 -1.63 5.16 30.67 0.16 -1.47 16 8 C -0.10 -1.70 6.09 30.65 0.19 -1.51 16 9 C 0.01 0.24 4.72 86.32 0.41 0.65 16 10 N -0.52 -15.12 4.86 -896.37 -4.35 -19.47 16 11 C 0.07 2.60 5.08 86.31 0.44 3.04 16 12 C -0.08 -3.49 0.52 -52.18 -0.03 -3.51 16 13 C -0.15 -6.53 7.22 71.98 0.52 -6.01 16 14 C -0.14 -5.31 6.30 71.98 0.45 -4.86 16 15 C 0.05 2.45 3.99 29.85 0.12 2.57 16 16 C -0.52 -30.00 7.39 25.60 0.19 -29.81 16 17 H 0.06 3.30 5.79 -2.91 -0.02 3.28 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 19 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 20 Si 0.95 46.16 29.54 68.60 2.03 48.18 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 C 0.05 1.53 1.85 86.32 0.16 1.69 16 25 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.42 2.79 8.30 -92.71 -0.77 2.02 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.10 0.84 7.65 -2.39 -0.02 0.82 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.58 3.58 -2.38 -0.01 1.57 16 34 H 0.07 1.75 7.92 -2.39 -0.02 1.73 16 35 H 0.06 2.38 7.69 -2.39 -0.02 2.36 16 36 H 0.06 2.35 7.88 -2.39 -0.02 2.33 16 37 H 0.09 3.46 3.84 -2.38 -0.01 3.45 16 38 H 0.03 1.64 6.30 -2.39 -0.02 1.63 16 39 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 40 H 0.05 1.98 6.85 -2.39 -0.02 1.97 16 41 H 0.04 1.67 6.45 -2.39 -0.02 1.66 16 42 H 0.08 2.57 3.62 -2.39 -0.01 2.56 16 43 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 44 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 46 H 0.06 2.12 6.68 -2.39 -0.02 2.10 16 47 H 0.06 2.02 2.94 -2.39 -0.01 2.01 16 Total: -1.00 -74.09 339.89 0.42 -73.67 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.20 Total: 14.61 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 5.03 Total: -25.83 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -6.79 Total: -90.63 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -74.09 0.42 -73.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093361406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.090 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds