Wall clock time and date at job start Tue Mar 31 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47190 * 2 1 4 4 C 1.53004 * 109.47018 * 175.24175 * 3 2 1 5 5 H 1.09004 * 109.37963 * 176.47170 * 4 3 2 6 6 C 1.50254 * 109.30100 * 56.73445 * 4 3 2 7 7 O 1.21277 * 118.62769 * 42.69022 * 6 4 3 8 8 N 1.33712 * 122.74800 * 222.71610 * 6 4 3 9 9 C 1.46011 * 122.92894 * 1.66229 * 8 6 4 10 10 C 1.52987 * 110.04050 * 341.84414 * 9 8 6 11 11 N 1.46899 * 109.38686 * 296.26508 * 4 3 2 12 12 C 1.46904 * 111.00043 * 293.71615 * 11 4 3 13 13 C 1.52999 * 109.47177 * 152.69480 * 12 11 4 14 14 C 1.52997 * 109.47009 * 304.01100 * 13 12 11 15 15 C 1.52997 * 109.46906 * 64.00625 * 13 12 11 16 16 C 1.52991 * 109.47360 * 184.00999 * 13 12 11 17 17 C 1.50693 * 109.47438 * 180.02562 * 16 13 12 18 18 H 1.07997 * 120.00004 * 0.02562 * 17 16 13 19 19 C 1.37884 * 120.00271 * 179.97438 * 17 16 13 20 20 N 1.31508 * 119.99845 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47072 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47103 * 120.00106 * 21 19 17 24 24 H 1.48497 * 109.46669 * 239.99913 * 21 19 17 25 25 H 1.08997 * 109.46773 * 299.99854 * 1 2 3 26 26 H 1.09007 * 109.46767 * 59.99952 * 1 2 3 27 27 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47285 * 240.00255 * 2 1 3 29 29 H 1.08997 * 109.47521 * 120.00226 * 2 1 3 30 30 H 1.09002 * 109.47008 * 55.24221 * 3 2 1 31 31 H 1.08996 * 109.47216 * 295.24590 * 3 2 1 32 32 H 0.97004 * 118.54034 * 181.63842 * 8 6 4 33 33 H 1.09000 * 109.37516 * 102.01687 * 9 8 6 34 34 H 1.08997 * 109.37596 * 221.66274 * 9 8 6 35 35 H 1.08999 * 109.60862 * 290.52765 * 10 9 8 36 36 H 1.08995 * 109.59176 * 170.07017 * 10 9 8 37 37 H 1.08998 * 109.46900 * 272.69894 * 12 11 4 38 38 H 1.09001 * 109.46778 * 32.69344 * 12 11 4 39 39 H 1.09006 * 109.47228 * 59.99763 * 14 13 12 40 40 H 1.09005 * 109.47088 * 179.97438 * 14 13 12 41 41 H 1.08994 * 109.47424 * 299.99926 * 14 13 12 42 42 H 1.09011 * 109.46966 * 50.15328 * 15 13 12 43 43 H 1.09006 * 109.47432 * 170.14704 * 15 13 12 44 44 H 1.08992 * 109.47504 * 290.15033 * 15 13 12 45 45 H 1.09001 * 109.47305 * 300.00103 * 16 13 12 46 46 H 1.09003 * 109.47218 * 59.99754 * 16 13 12 47 47 H 0.96996 * 120.00030 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1197 5 1 3.9321 2.4687 0.0565 6 6 4.1524 0.6343 -1.0016 7 8 3.6915 0.7649 -2.1158 8 7 5.1612 -0.2247 -0.8223 9 6 5.7623 -0.4818 0.4833 10 6 5.4084 0.6460 1.4546 11 7 3.9536 0.8660 1.4131 12 6 3.5189 1.7228 2.5244 13 6 3.3015 0.8666 3.7736 14 6 2.3009 -0.2477 3.4604 15 6 4.6328 0.2495 4.2069 16 6 2.7535 1.7415 4.9026 17 6 2.5399 0.8984 6.1332 18 1 2.7723 -0.1561 6.1123 19 6 2.0488 1.4733 7.2863 20 7 1.7663 2.7574 7.3119 21 14 1.7848 0.4282 8.8119 22 1 2.1769 -0.9750 8.5246 23 1 2.6159 0.9562 9.9235 24 1 0.3522 0.4727 9.2004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6088 1.9804 0.8443 31 1 1.7479 1.9312 -0.9295 32 1 5.5092 -0.6985 -1.5940 33 1 5.3864 -1.4272 0.8745 34 1 6.8454 -0.5414 0.3773 35 1 5.9248 1.5591 1.1586 36 1 5.7071 0.3656 2.4646 37 1 4.2842 2.4722 2.7262 38 1 2.5860 2.2190 2.2571 39 1 2.6914 -0.8711 2.6559 40 1 2.1463 -0.8580 4.3502 41 1 1.3525 0.1919 3.1516 42 1 5.3937 1.0282 4.2610 43 1 4.5168 -0.2137 5.1868 44 1 4.9364 -0.5055 3.4819 45 1 3.4663 2.5354 5.1258 46 1 1.8050 2.1812 4.5939 47 1 1.4212 3.1620 8.1231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093771925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:29 Heat of formation + Delta-G solvation = -44.426515 kcal Electronic energy + Delta-G solvation = -24354.240937 eV Core-core repulsion = 21150.480344 eV Total energy + Delta-G solvation = -3203.760593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.69353 -38.10763 -35.90739 -35.37707 -33.32530 -32.15646 -30.14118 -28.21625 -26.94973 -26.44727 -25.92206 -23.80775 -22.95271 -22.00547 -21.19245 -18.68310 -18.01570 -17.37573 -16.74453 -16.29990 -15.57885 -15.03623 -14.87751 -14.62445 -14.30302 -14.06810 -13.76817 -13.44996 -12.94238 -12.80384 -12.64418 -12.30863 -12.27360 -12.03672 -12.00197 -11.69162 -11.22548 -11.09455 -10.92806 -10.80280 -10.68188 -10.64246 -10.49582 -10.38719 -10.12805 -9.99482 -9.81960 -9.63732 -9.14719 -8.98413 -8.87012 -8.33791 -8.19190 -5.98302 -3.98198 2.62387 3.22182 3.30939 3.39320 3.42104 3.86196 4.47340 4.49814 4.75112 4.92833 5.04946 5.12813 5.19850 5.36270 5.37836 5.49918 5.52991 5.67819 5.74404 5.76426 5.84459 5.87158 5.94920 6.01935 6.13158 6.18650 6.25726 6.29883 6.44739 6.50001 6.55691 6.66121 6.70283 6.77780 6.82702 7.06060 7.07990 7.19890 7.23662 7.29978 7.36909 7.68462 7.82804 8.02010 8.19156 8.46164 9.07435 9.64832 11.13360 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023128 B = 0.004694 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.370806 B = 5963.438211 C = 6538.473576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.098 4.098 4 C 0.067 3.933 5 H 0.069 0.931 6 C 0.534 3.466 7 O -0.556 6.556 8 N -0.720 5.720 9 C 0.116 3.884 10 C 0.010 3.990 11 N -0.515 5.515 12 C 0.059 3.941 13 C -0.049 4.049 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.396 0.604 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.122 0.878 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -5.235 -13.515 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.136 4.136 4 C -0.045 4.045 5 H 0.087 0.913 6 C 0.321 3.679 7 O -0.433 6.433 8 N -0.372 5.372 9 C -0.009 4.009 10 C -0.118 4.118 11 N -0.241 5.241 12 C -0.068 4.068 13 C -0.049 4.049 14 C -0.172 4.172 15 C -0.193 4.193 16 C -0.005 4.005 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.714 3.286 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.231 0.769 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.140 0.860 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.943 -5.368 -13.744 15.907 hybrid contribution 0.490 0.227 0.655 0.848 sum 6.432 -5.141 -13.089 15.464 Atomic orbital electron populations 1.21741 0.96261 1.01230 1.01441 1.21544 0.95362 0.96303 1.02837 1.21538 0.90897 0.98734 1.02479 1.21787 0.98012 0.96340 0.88353 0.91334 1.20113 0.78658 0.79327 0.89822 1.90723 1.60349 1.67015 1.25236 1.45586 1.36115 1.44373 1.11151 1.21518 0.97315 0.99539 0.82484 1.23090 0.89148 0.97142 1.02395 1.62558 1.12326 1.48002 1.01177 1.22497 0.99771 0.93921 0.90613 1.20533 0.95316 0.95965 0.93120 1.21639 0.97680 0.97894 0.99992 1.22036 0.96559 0.99267 1.01431 1.19130 0.95687 0.94231 0.91428 1.21253 1.41991 0.95307 0.95790 0.92202 1.25006 0.95936 0.94815 0.98783 1.69969 1.45289 1.10537 1.27910 0.86632 0.77743 0.80687 0.83516 1.19770 1.21240 1.21179 0.92515 0.93416 0.93152 0.92891 0.89731 0.90401 0.91084 0.76922 0.90789 0.90654 0.94421 0.86025 0.94563 0.90744 0.93596 0.92838 0.94221 0.94334 0.91461 0.93713 0.96976 0.96707 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.67 5.46 -26.73 -0.15 -1.81 16 3 C -0.10 -1.32 4.58 -26.73 -0.12 -1.44 16 4 C 0.07 0.88 2.18 -69.08 -0.15 0.73 16 5 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 6 C 0.53 7.32 6.21 -11.68 -0.07 7.24 16 7 O -0.56 -9.30 16.70 5.56 0.09 -9.21 16 8 N -0.72 -7.72 5.52 -61.06 -0.34 -8.06 16 9 C 0.12 1.04 7.39 -4.31 -0.03 1.01 16 10 C 0.01 0.11 4.91 -3.67 -0.02 0.09 16 11 N -0.51 -6.71 2.69 -228.06 -0.61 -7.32 16 12 C 0.06 0.91 4.02 -3.82 -0.02 0.89 16 13 C -0.05 -0.88 0.60 -154.52 -0.09 -0.98 16 14 C -0.11 -2.04 7.39 37.16 0.27 -1.77 16 15 C -0.14 -2.26 6.76 37.16 0.25 -2.01 16 16 C 0.03 0.78 4.04 -27.89 -0.11 0.67 16 17 C -0.51 -13.22 7.52 -34.44 -0.26 -13.48 16 18 H 0.06 1.53 5.73 -52.49 -0.30 1.23 16 19 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.77 6.99 -51.93 -0.36 0.41 16 29 H 0.08 1.22 5.52 -51.93 -0.29 0.93 16 30 H 0.08 1.06 6.14 -51.93 -0.32 0.74 16 31 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 32 H 0.40 3.65 8.84 -40.82 -0.36 3.29 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.12 1.36 3.86 -51.93 -0.20 1.15 16 37 H 0.04 0.57 7.86 -51.93 -0.41 0.16 16 38 H 0.07 1.19 5.78 -51.93 -0.30 0.89 16 39 H 0.05 0.73 6.18 -51.93 -0.32 0.41 16 40 H 0.05 1.04 6.62 -51.93 -0.34 0.70 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.61 7.71 -51.92 -0.40 0.21 16 43 H 0.07 1.27 6.35 -51.93 -0.33 0.94 16 44 H 0.04 0.62 6.05 -51.93 -0.31 0.31 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -29.98 346.68 -8.16 -38.14 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.02 Total: 1.54 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.22 Total: -10.93 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.21 Total: -40.82 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.98 -8.16 -38.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093771925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.285 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds