Wall clock time and date at job start Tue Mar 31 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47190 * 2 1 4 4 C 1.53004 * 109.47018 * 175.24175 * 3 2 1 5 5 H 1.09004 * 109.37963 * 176.47170 * 4 3 2 6 6 C 1.50254 * 109.30100 * 56.73445 * 4 3 2 7 7 O 1.21277 * 118.62769 * 42.69022 * 6 4 3 8 8 N 1.33712 * 122.74800 * 222.71610 * 6 4 3 9 9 C 1.46011 * 122.92894 * 1.66229 * 8 6 4 10 10 C 1.52987 * 110.04050 * 341.84414 * 9 8 6 11 11 N 1.46899 * 109.38686 * 296.26508 * 4 3 2 12 12 C 1.46904 * 111.00043 * 293.71615 * 11 4 3 13 13 C 1.52999 * 109.47177 * 152.69480 * 12 11 4 14 14 C 1.52997 * 109.47009 * 304.01100 * 13 12 11 15 15 C 1.52997 * 109.46906 * 64.00625 * 13 12 11 16 16 C 1.52991 * 109.47360 * 184.00999 * 13 12 11 17 17 C 1.50693 * 109.47438 * 180.02562 * 16 13 12 18 18 H 1.07997 * 120.00004 * 0.02562 * 17 16 13 19 19 C 1.37884 * 120.00271 * 179.97438 * 17 16 13 20 20 N 1.31508 * 119.99845 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47072 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47103 * 120.00106 * 21 19 17 24 24 H 1.48497 * 109.46669 * 239.99913 * 21 19 17 25 25 H 1.08997 * 109.46773 * 299.99854 * 1 2 3 26 26 H 1.09007 * 109.46767 * 59.99952 * 1 2 3 27 27 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47285 * 240.00255 * 2 1 3 29 29 H 1.08997 * 109.47521 * 120.00226 * 2 1 3 30 30 H 1.09002 * 109.47008 * 55.24221 * 3 2 1 31 31 H 1.08996 * 109.47216 * 295.24590 * 3 2 1 32 32 H 0.97004 * 118.54034 * 181.63842 * 8 6 4 33 33 H 1.09000 * 109.37516 * 102.01687 * 9 8 6 34 34 H 1.08997 * 109.37596 * 221.66274 * 9 8 6 35 35 H 1.08999 * 109.60862 * 290.52765 * 10 9 8 36 36 H 1.08995 * 109.59176 * 170.07017 * 10 9 8 37 37 H 1.08998 * 109.46900 * 272.69894 * 12 11 4 38 38 H 1.09001 * 109.46778 * 32.69344 * 12 11 4 39 39 H 1.09006 * 109.47228 * 59.99763 * 14 13 12 40 40 H 1.09005 * 109.47088 * 179.97438 * 14 13 12 41 41 H 1.08994 * 109.47424 * 299.99926 * 14 13 12 42 42 H 1.09011 * 109.46966 * 50.15328 * 15 13 12 43 43 H 1.09006 * 109.47432 * 170.14704 * 15 13 12 44 44 H 1.08992 * 109.47504 * 290.15033 * 15 13 12 45 45 H 1.09001 * 109.47305 * 300.00103 * 16 13 12 46 46 H 1.09003 * 109.47218 * 59.99754 * 16 13 12 47 47 H 0.96996 * 120.00030 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1197 5 1 3.9321 2.4687 0.0565 6 6 4.1524 0.6343 -1.0016 7 8 3.6915 0.7649 -2.1158 8 7 5.1612 -0.2247 -0.8223 9 6 5.7623 -0.4818 0.4833 10 6 5.4084 0.6460 1.4546 11 7 3.9536 0.8660 1.4131 12 6 3.5189 1.7228 2.5244 13 6 3.3015 0.8666 3.7736 14 6 2.3009 -0.2477 3.4604 15 6 4.6328 0.2495 4.2069 16 6 2.7535 1.7415 4.9026 17 6 2.5399 0.8984 6.1332 18 1 2.7723 -0.1561 6.1123 19 6 2.0488 1.4733 7.2863 20 7 1.7663 2.7574 7.3119 21 14 1.7848 0.4282 8.8119 22 1 2.1769 -0.9750 8.5246 23 1 2.6159 0.9562 9.9235 24 1 0.3522 0.4727 9.2004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6088 1.9804 0.8443 31 1 1.7479 1.9312 -0.9295 32 1 5.5092 -0.6985 -1.5940 33 1 5.3864 -1.4272 0.8745 34 1 6.8454 -0.5414 0.3773 35 1 5.9248 1.5591 1.1586 36 1 5.7071 0.3656 2.4646 37 1 4.2842 2.4722 2.7262 38 1 2.5860 2.2190 2.2571 39 1 2.6914 -0.8711 2.6559 40 1 2.1463 -0.8580 4.3502 41 1 1.3525 0.1919 3.1516 42 1 5.3937 1.0282 4.2610 43 1 4.5168 -0.2137 5.1868 44 1 4.9364 -0.5055 3.4819 45 1 3.4663 2.5354 5.1258 46 1 1.8050 2.1812 4.5939 47 1 1.4212 3.1620 8.1231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093771925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:27 Heat of formation + Delta-G solvation = -63.266023 kcal Electronic energy + Delta-G solvation = -24355.057880 eV Core-core repulsion = 21150.480344 eV Total energy + Delta-G solvation = -3204.577536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74603 -39.37794 -37.13915 -36.49557 -34.71990 -33.87382 -31.15839 -29.48612 -28.67687 -27.81511 -27.10185 -25.36300 -24.04870 -23.37503 -22.25619 -19.72110 -19.43657 -18.38906 -18.28179 -17.79572 -16.67555 -16.55616 -15.98116 -15.89490 -15.63965 -15.21550 -15.02436 -14.61893 -14.34863 -14.21772 -13.85722 -13.76679 -13.64997 -13.36649 -13.05850 -12.88277 -12.73362 -12.59593 -12.40737 -12.26163 -12.24241 -12.04688 -11.84421 -11.74522 -11.53535 -11.35637 -11.20115 -10.98578 -10.75956 -10.49343 -10.46016 -10.02656 -9.30219 -8.09821 -6.15389 1.42134 1.44329 1.55211 1.57336 2.32545 2.46599 2.78411 3.25078 3.52038 3.86320 3.92773 3.99364 4.17413 4.25266 4.28016 4.36599 4.48873 4.49330 4.58133 4.68132 4.79665 4.81525 4.84934 4.86615 4.99537 5.02840 5.07434 5.10180 5.17124 5.25101 5.30140 5.33774 5.43178 5.53428 5.60711 5.67098 5.69830 5.73462 5.79057 5.95385 5.96809 6.01792 6.13088 6.28848 6.42609 7.00683 7.21629 7.51787 9.02585 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023128 B = 0.004694 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.370806 B = 5963.438211 C = 6538.473576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.097 4.097 4 C 0.068 3.932 5 H 0.071 0.929 6 C 0.533 3.467 7 O -0.591 6.591 8 N -0.709 5.709 9 C 0.117 3.883 10 C 0.004 3.996 11 N -0.512 5.512 12 C 0.070 3.930 13 C -0.043 4.043 14 C -0.103 4.103 15 C -0.129 4.129 16 C 0.039 3.961 17 C -0.506 4.506 18 H 0.067 0.933 19 C -0.003 4.003 20 N -0.938 5.938 21 Si 0.950 3.050 22 H -0.260 1.260 23 H -0.284 1.284 24 H -0.286 1.286 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.406 0.594 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.125 0.875 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.028 0.972 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.079 0.921 45 H -0.015 1.015 46 H -0.017 1.017 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 -7.169 -14.089 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.135 4.135 4 C -0.043 4.043 5 H 0.088 0.912 6 C 0.320 3.680 7 O -0.472 6.472 8 N -0.360 5.360 9 C -0.006 4.006 10 C -0.123 4.123 11 N -0.238 5.238 12 C -0.057 4.057 13 C -0.043 4.043 14 C -0.161 4.161 15 C -0.186 4.186 16 C 0.001 3.999 17 C -0.545 4.545 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.580 5.580 21 Si 0.777 3.223 22 H -0.184 1.184 23 H -0.210 1.210 24 H -0.212 1.212 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.061 0.939 36 H 0.142 0.858 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.003 0.997 46 H 0.001 0.999 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.492 -7.342 -14.313 17.745 hybrid contribution 0.051 0.843 0.808 1.169 sum 7.543 -6.498 -13.505 16.778 Atomic orbital electron populations 1.21726 0.95625 1.01779 1.01390 1.21442 0.95918 0.95969 1.01891 1.21500 0.91377 0.98674 1.01985 1.21734 0.97755 0.96572 0.88262 0.91189 1.20076 0.79099 0.79712 0.89127 1.90711 1.61758 1.68365 1.26381 1.45551 1.34909 1.43126 1.12408 1.21701 0.99355 0.98705 0.80874 1.23210 0.87455 0.98339 1.03282 1.62472 1.14132 1.46928 1.00221 1.22193 0.99546 0.93559 0.90430 1.20355 0.96161 0.95464 0.92356 1.21524 0.97218 0.97528 0.99782 1.21973 0.95575 1.00054 1.00992 1.19018 0.93674 0.94108 0.93085 1.21648 1.40573 0.95790 0.96450 0.91515 1.25857 0.96107 0.95881 1.02132 1.70106 1.46826 1.12364 1.28727 0.85607 0.77392 0.79619 0.79713 1.18351 1.21030 1.21238 0.93152 0.92875 0.92318 0.93732 0.90435 0.91002 0.91447 0.75765 0.89941 0.87046 0.93877 0.85780 0.94677 0.91755 0.91202 0.94722 0.95291 0.93740 0.93866 0.90271 0.99684 0.99867 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.11 -3.00 5.46 30.60 0.17 -2.84 16 3 C -0.10 -2.57 4.58 30.60 0.14 -2.43 16 4 C 0.07 1.72 2.18 44.03 0.10 1.81 16 5 H 0.07 1.76 8.12 -2.38 -0.02 1.74 16 6 C 0.53 13.64 6.21 87.68 0.54 14.18 16 7 O -0.59 -19.19 16.70 -3.02 -0.05 -19.24 16 8 N -0.71 -13.01 5.52 -466.09 -2.57 -15.58 16 9 C 0.12 1.61 7.39 86.47 0.64 2.25 16 10 C 0.00 0.08 4.91 86.24 0.42 0.51 16 11 N -0.51 -12.34 2.69 -875.44 -2.36 -14.69 16 12 C 0.07 2.13 4.02 86.30 0.35 2.47 16 13 C -0.04 -1.53 0.60 -52.19 -0.03 -1.56 16 14 C -0.10 -3.58 7.39 71.98 0.53 -3.05 16 15 C -0.13 -4.05 6.76 71.98 0.49 -3.57 16 16 C 0.04 1.89 4.04 29.84 0.12 2.01 16 17 C -0.51 -26.81 7.52 25.60 0.19 -26.62 16 18 H 0.07 3.39 5.73 -2.91 -0.02 3.37 16 19 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 20 N -0.94 -56.19 13.29 21.45 0.28 -55.91 16 21 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.24 6.99 -2.39 -0.02 1.23 16 29 H 0.08 2.12 5.52 -2.39 -0.01 2.11 16 30 H 0.07 1.98 6.14 -2.39 -0.01 1.96 16 31 H 0.07 1.82 7.92 -2.39 -0.02 1.80 16 32 H 0.41 6.21 8.84 -92.71 -0.82 5.39 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.04 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.12 2.29 3.86 -2.39 -0.01 2.28 16 37 H 0.03 1.07 7.86 -2.39 -0.02 1.05 16 38 H 0.06 2.08 5.78 -2.39 -0.01 2.07 16 39 H 0.07 2.08 6.18 -2.38 -0.01 2.06 16 40 H 0.03 1.31 6.62 -2.38 -0.02 1.30 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 1.33 7.71 -2.38 -0.02 1.31 16 43 H 0.04 1.57 6.35 -2.38 -0.02 1.55 16 44 H 0.08 1.93 6.05 -2.39 -0.01 1.92 16 45 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 47 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -65.92 346.68 2.30 -63.62 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.14 Total: 15.76 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.83 Total: -19.42 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -4.64 Total: -86.18 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.92 2.30 -63.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093771925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.353 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds