Wall clock time and date at job start Tue Mar 31 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47593 * 2 1 4 4 C 1.52993 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.30022 * 59.10473 * 4 3 2 6 6 C 1.50254 * 109.38855 * 178.84726 * 4 3 2 7 7 O 1.21283 * 118.62241 * 317.33399 * 6 4 3 8 8 N 1.33711 * 122.75657 * 137.35830 * 6 4 3 9 9 C 1.46012 * 122.92192 * 358.31147 * 8 6 4 10 10 C 1.52981 * 110.04295 * 18.16546 * 9 8 6 11 11 N 1.46903 * 109.38706 * 299.36351 * 4 3 2 12 12 C 1.46894 * 111.00326 * 312.91059 * 11 4 3 13 13 C 1.52996 * 109.47255 * 159.34048 * 12 11 4 14 14 C 1.52998 * 109.47420 * 310.85337 * 13 12 11 15 15 C 1.52997 * 109.46837 * 70.85369 * 13 12 11 16 16 C 1.53001 * 109.47213 * 190.85165 * 13 12 11 17 17 C 1.50703 * 109.47071 * 180.02562 * 16 13 12 18 18 H 1.07994 * 119.99882 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99849 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00175 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99866 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47268 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47155 * 120.00007 * 21 19 17 24 24 H 1.48502 * 109.47016 * 239.99784 * 21 19 17 25 25 H 1.09006 * 109.47210 * 300.00033 * 1 2 3 26 26 H 1.09004 * 109.47047 * 59.99893 * 1 2 3 27 27 H 1.08997 * 109.47575 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46942 * 240.00257 * 2 1 3 29 29 H 1.08996 * 109.46962 * 120.00462 * 2 1 3 30 30 H 1.09006 * 109.46869 * 59.99758 * 3 2 1 31 31 H 1.08996 * 109.47343 * 300.00228 * 3 2 1 32 32 H 0.96998 * 118.53931 * 178.33578 * 8 6 4 33 33 H 1.09009 * 109.37237 * 138.33513 * 9 8 6 34 34 H 1.09001 * 109.37981 * 257.98249 * 9 8 6 35 35 H 1.08999 * 109.59902 * 69.48092 * 10 9 8 36 36 H 1.09007 * 109.59020 * 189.93126 * 10 9 8 37 37 H 1.08993 * 109.47495 * 279.34919 * 12 11 4 38 38 H 1.09009 * 109.46600 * 39.34473 * 12 11 4 39 39 H 1.08996 * 109.47132 * 59.99915 * 14 13 12 40 40 H 1.09003 * 109.47194 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.47110 * 299.99399 * 14 13 12 42 42 H 1.08997 * 109.47366 * 22.93982 * 15 13 12 43 43 H 1.09003 * 109.47816 * 142.94113 * 15 13 12 44 44 H 1.09004 * 109.47451 * 262.93966 * 15 13 12 45 45 H 1.09000 * 109.46963 * 300.00300 * 16 13 12 46 46 H 1.08994 * 109.47216 * 60.00072 * 16 13 12 47 47 H 0.96996 * 120.00534 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9306 0.9140 -0.8819 6 6 4.0689 2.8594 -0.0279 7 8 3.5237 3.6525 -0.7658 8 7 5.0890 3.2825 0.7259 9 6 5.7891 2.4179 1.6716 10 6 5.5108 0.9496 1.3446 11 7 4.0571 0.7630 1.2087 12 6 3.3507 1.2431 2.4037 13 6 3.4824 0.2092 3.5238 14 6 3.1232 -1.1765 2.9837 15 6 4.9225 0.1977 4.0404 16 6 2.5332 0.5725 4.6675 17 6 2.6635 -0.4455 5.7710 18 1 3.3538 -1.2694 5.6668 19 6 1.9005 -0.3256 6.9131 20 7 1.0594 0.6775 7.0398 21 14 2.0613 -1.5878 8.2807 22 1 3.0686 -2.6088 7.8959 23 1 2.4947 -0.9118 9.5298 24 1 0.7489 -2.2459 8.5037 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 5.3766 4.2050 0.6409 33 1 6.8610 2.6057 1.6080 34 1 5.4451 2.6348 2.6829 35 1 6.0026 0.6838 0.4090 36 1 5.8866 0.3183 2.1499 37 1 3.7863 2.1880 2.7283 38 1 2.2967 1.3909 2.1678 39 1 3.7994 -1.4353 2.1690 40 1 3.2175 -1.9131 3.7816 41 1 2.0973 -1.1683 2.6158 42 1 5.3984 1.1511 3.8111 43 1 4.9204 0.0429 5.1193 44 1 5.4749 -0.6092 3.5587 45 1 2.7891 1.5597 5.0523 46 1 1.5073 0.5808 4.2995 47 1 0.5229 0.7622 7.8434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093771926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:35 Heat of formation + Delta-G solvation = -35.983797 kcal Electronic energy + Delta-G solvation = -24580.146393 eV Core-core repulsion = 21376.751903 eV Total energy + Delta-G solvation = -3203.394490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05025 -38.10312 -35.79775 -35.54435 -33.09895 -32.16815 -30.17092 -27.96174 -26.96065 -26.41752 -26.24070 -23.89304 -22.95816 -22.23042 -20.82810 -19.11405 -17.72768 -17.28775 -16.71387 -16.19284 -15.85397 -15.35415 -15.05420 -14.42913 -14.27617 -14.01637 -13.59032 -13.23799 -13.12693 -12.81063 -12.59448 -12.44535 -12.11784 -11.95038 -11.90387 -11.67081 -11.26811 -11.06816 -10.89328 -10.86933 -10.82565 -10.70092 -10.43497 -10.32085 -10.17535 -9.98633 -9.93573 -9.61834 -9.12693 -9.02418 -8.88603 -8.33824 -8.04873 -5.98185 -3.98302 2.59850 3.14721 3.30864 3.39298 3.42038 3.98770 4.47303 4.47941 4.77075 4.87858 4.98393 5.13022 5.21160 5.35603 5.37829 5.43288 5.50092 5.63410 5.72784 5.80480 5.84849 5.93456 5.98201 6.04023 6.05855 6.17511 6.27722 6.30254 6.42803 6.49391 6.59464 6.63991 6.66111 6.72467 6.88375 7.04179 7.09331 7.20986 7.24733 7.32782 7.39280 7.69310 7.83528 8.01761 8.16022 8.45883 9.07633 9.64682 11.13349 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.005276 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.301925 B = 5306.035238 C = 5988.505566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.108 4.108 4 C 0.072 3.928 5 H 0.111 0.889 6 C 0.491 3.509 7 O -0.556 6.556 8 N -0.721 5.721 9 C 0.066 3.934 10 C 0.023 3.977 11 N -0.508 5.508 12 C 0.040 3.960 13 C -0.050 4.050 14 C -0.115 4.115 15 C -0.141 4.141 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.285 1.285 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.395 0.605 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.011 0.989 46 H 0.014 0.986 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 0.293 -12.872 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.040 4.040 5 H 0.128 0.872 6 C 0.277 3.723 7 O -0.433 6.433 8 N -0.374 5.374 9 C -0.059 4.059 10 C -0.105 4.105 11 N -0.231 5.231 12 C -0.087 4.087 13 C -0.050 4.050 14 C -0.172 4.172 15 C -0.198 4.198 16 C -0.003 4.003 17 C -0.544 4.544 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.714 3.286 22 H -0.198 1.198 23 H -0.213 1.213 24 H -0.212 1.212 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.230 0.770 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.033 0.967 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.496 0.025 -13.172 15.156 hybrid contribution 0.435 0.789 1.015 1.357 sum 7.931 0.814 -12.157 14.538 Atomic orbital electron populations 1.21770 0.96215 1.01477 1.01521 1.21581 0.95265 0.95702 1.03567 1.21688 0.91013 0.98627 1.03217 1.21978 0.97725 0.88073 0.96240 0.87177 1.21434 0.79226 0.92463 0.79196 1.90710 1.56440 1.55803 1.40379 1.45625 1.34705 1.15060 1.41994 1.22238 0.97192 0.92831 0.93667 1.22927 0.89920 0.93641 1.04047 1.62715 1.03082 1.54940 1.02321 1.22833 0.99176 0.97160 0.89512 1.20546 0.96277 0.94254 0.93948 1.21689 0.99834 0.96390 0.99332 1.22201 0.95934 0.98685 1.03002 1.19152 0.93449 0.96490 0.91218 1.21244 1.22054 1.10066 1.01020 0.92195 1.25013 0.95559 0.95533 0.98458 1.69972 1.25451 1.30402 1.27805 0.86630 0.77849 0.81746 0.82335 1.19757 1.21254 1.21174 0.92553 0.93400 0.92812 0.92488 0.89222 0.90892 0.90732 0.76959 0.90439 0.90264 0.90576 0.86594 0.94417 0.89866 0.93515 0.92861 0.93955 0.94559 0.90910 0.93952 0.97086 0.96744 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.56 5.61 -26.73 -0.15 -1.71 16 3 C -0.11 -1.45 3.91 -26.74 -0.10 -1.55 16 4 C 0.07 0.93 2.46 -69.08 -0.17 0.76 16 5 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 6 C 0.49 7.06 6.97 -11.68 -0.08 6.97 16 7 O -0.56 -9.83 17.05 5.55 0.09 -9.73 16 8 N -0.72 -8.58 5.44 -61.06 -0.33 -8.91 16 9 C 0.07 0.68 6.12 -4.32 -0.03 0.65 16 10 C 0.02 0.25 5.41 -3.68 -0.02 0.23 16 11 N -0.51 -6.54 2.97 -228.07 -0.68 -7.21 16 12 C 0.04 0.63 2.97 -3.83 -0.01 0.62 16 13 C -0.05 -0.90 0.61 -154.51 -0.09 -0.99 16 14 C -0.12 -2.02 6.92 37.16 0.26 -1.77 16 15 C -0.14 -2.32 7.21 37.16 0.27 -2.06 16 16 C 0.03 0.82 3.99 -27.88 -0.11 0.71 16 17 C -0.51 -13.22 7.18 -34.44 -0.25 -13.47 16 18 H 0.06 1.53 6.16 -52.49 -0.32 1.20 16 19 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.27 4.53 -51.93 -0.24 1.03 16 30 H 0.07 1.10 5.85 -51.93 -0.30 0.80 16 31 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 32 H 0.40 4.26 8.84 -40.82 -0.36 3.90 16 33 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.08 0.92 5.03 -51.93 -0.26 0.66 16 35 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.12 1.26 4.56 -51.92 -0.24 1.02 16 37 H 0.04 0.61 5.24 -51.93 -0.27 0.34 16 38 H 0.08 1.42 4.76 -51.92 -0.25 1.18 16 39 H 0.05 0.72 7.33 -51.93 -0.38 0.34 16 40 H 0.05 1.03 6.62 -51.93 -0.34 0.68 16 41 H 0.04 0.76 6.54 -51.93 -0.34 0.42 16 42 H 0.04 0.52 4.82 -51.93 -0.25 0.26 16 43 H 0.07 1.41 6.39 -51.93 -0.33 1.07 16 44 H 0.04 0.61 6.53 -51.93 -0.34 0.27 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -30.07 336.85 -7.91 -37.98 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.57 Total: 3.96 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.22 Total: -11.70 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.27 Total: -41.63 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.07 -7.91 -37.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093771926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.992 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds