Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47593 * 2 1 4 4 C 1.52993 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.30022 * 59.10473 * 4 3 2 6 6 C 1.50254 * 109.38855 * 178.84726 * 4 3 2 7 7 O 1.21283 * 118.62241 * 317.33399 * 6 4 3 8 8 N 1.33711 * 122.75657 * 137.35830 * 6 4 3 9 9 C 1.46012 * 122.92192 * 358.31147 * 8 6 4 10 10 C 1.52981 * 110.04295 * 18.16546 * 9 8 6 11 11 N 1.46903 * 109.38706 * 299.36351 * 4 3 2 12 12 C 1.46894 * 111.00326 * 312.91059 * 11 4 3 13 13 C 1.52996 * 109.47255 * 159.34048 * 12 11 4 14 14 C 1.52998 * 109.47420 * 310.85337 * 13 12 11 15 15 C 1.52997 * 109.46837 * 70.85369 * 13 12 11 16 16 C 1.53001 * 109.47213 * 190.85165 * 13 12 11 17 17 C 1.50703 * 109.47071 * 180.02562 * 16 13 12 18 18 H 1.07994 * 119.99882 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99849 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00175 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99866 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47268 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47155 * 120.00007 * 21 19 17 24 24 H 1.48502 * 109.47016 * 239.99784 * 21 19 17 25 25 H 1.09006 * 109.47210 * 300.00033 * 1 2 3 26 26 H 1.09004 * 109.47047 * 59.99893 * 1 2 3 27 27 H 1.08997 * 109.47575 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46942 * 240.00257 * 2 1 3 29 29 H 1.08996 * 109.46962 * 120.00462 * 2 1 3 30 30 H 1.09006 * 109.46869 * 59.99758 * 3 2 1 31 31 H 1.08996 * 109.47343 * 300.00228 * 3 2 1 32 32 H 0.96998 * 118.53931 * 178.33578 * 8 6 4 33 33 H 1.09009 * 109.37237 * 138.33513 * 9 8 6 34 34 H 1.09001 * 109.37981 * 257.98249 * 9 8 6 35 35 H 1.08999 * 109.59902 * 69.48092 * 10 9 8 36 36 H 1.09007 * 109.59020 * 189.93126 * 10 9 8 37 37 H 1.08993 * 109.47495 * 279.34919 * 12 11 4 38 38 H 1.09009 * 109.46600 * 39.34473 * 12 11 4 39 39 H 1.08996 * 109.47132 * 59.99915 * 14 13 12 40 40 H 1.09003 * 109.47194 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.47110 * 299.99399 * 14 13 12 42 42 H 1.08997 * 109.47366 * 22.93982 * 15 13 12 43 43 H 1.09003 * 109.47816 * 142.94113 * 15 13 12 44 44 H 1.09004 * 109.47451 * 262.93966 * 15 13 12 45 45 H 1.09000 * 109.46963 * 300.00300 * 16 13 12 46 46 H 1.08994 * 109.47216 * 60.00072 * 16 13 12 47 47 H 0.96996 * 120.00534 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9306 0.9140 -0.8819 6 6 4.0689 2.8594 -0.0279 7 8 3.5237 3.6525 -0.7658 8 7 5.0890 3.2825 0.7259 9 6 5.7891 2.4179 1.6716 10 6 5.5108 0.9496 1.3446 11 7 4.0571 0.7630 1.2087 12 6 3.3507 1.2431 2.4037 13 6 3.4824 0.2092 3.5238 14 6 3.1232 -1.1765 2.9837 15 6 4.9225 0.1977 4.0404 16 6 2.5332 0.5725 4.6675 17 6 2.6635 -0.4455 5.7710 18 1 3.3538 -1.2694 5.6668 19 6 1.9005 -0.3256 6.9131 20 7 1.0594 0.6775 7.0398 21 14 2.0613 -1.5878 8.2807 22 1 3.0686 -2.6088 7.8959 23 1 2.4947 -0.9118 9.5298 24 1 0.7489 -2.2459 8.5037 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 5.3766 4.2050 0.6409 33 1 6.8610 2.6057 1.6080 34 1 5.4451 2.6348 2.6829 35 1 6.0026 0.6838 0.4090 36 1 5.8866 0.3183 2.1499 37 1 3.7863 2.1880 2.7283 38 1 2.2967 1.3909 2.1678 39 1 3.7994 -1.4353 2.1690 40 1 3.2175 -1.9131 3.7816 41 1 2.0973 -1.1683 2.6158 42 1 5.3984 1.1511 3.8111 43 1 4.9204 0.0429 5.1193 44 1 5.4749 -0.6092 3.5587 45 1 2.7891 1.5597 5.0523 46 1 1.5073 0.5808 4.2995 47 1 0.5229 0.7622 7.8434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093771926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = -55.736850 kcal Electronic energy + Delta-G solvation = -24581.002950 eV Core-core repulsion = 21376.751903 eV Total energy + Delta-G solvation = -3204.251046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14117 -39.38218 -37.12888 -36.66130 -34.57924 -33.77970 -31.22005 -29.33827 -28.62163 -27.74702 -27.44763 -25.36474 -24.31317 -23.42498 -21.87711 -20.40305 -18.97805 -18.37120 -18.23504 -17.80110 -16.94388 -16.64768 -16.34247 -16.01391 -15.46001 -15.14697 -14.82380 -14.57822 -14.49726 -14.08068 -13.95246 -13.77315 -13.62563 -13.30638 -12.96389 -12.81346 -12.74570 -12.59891 -12.41073 -12.30952 -12.10611 -11.95945 -11.92662 -11.75201 -11.64774 -11.39141 -11.13819 -11.09494 -10.76657 -10.62947 -10.47396 -10.12877 -9.15565 -8.10698 -6.16796 1.41883 1.43749 1.49284 1.55088 2.17160 2.46156 2.92339 3.23925 3.48566 3.74165 3.95850 4.05078 4.09101 4.22765 4.26208 4.33388 4.48791 4.51167 4.53257 4.64660 4.75643 4.81370 4.85017 4.92358 4.98161 5.03739 5.06012 5.10836 5.17927 5.26739 5.30377 5.35140 5.45121 5.55677 5.59909 5.65761 5.71212 5.74115 5.78272 5.94681 5.97885 6.02899 6.10226 6.24229 6.40451 6.99570 7.10496 7.50497 9.01780 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.005276 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.301925 B = 5306.035238 C = 5988.505566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.104 4.104 4 C 0.077 3.923 5 H 0.134 0.866 6 C 0.486 3.514 7 O -0.596 6.596 8 N -0.714 5.714 9 C 0.066 3.934 10 C 0.019 3.981 11 N -0.502 5.502 12 C 0.054 3.946 13 C -0.043 4.043 14 C -0.105 4.105 15 C -0.135 4.135 16 C 0.042 3.958 17 C -0.505 4.505 18 H 0.069 0.931 19 C -0.006 4.006 20 N -0.940 5.940 21 Si 0.953 3.047 22 H -0.258 1.258 23 H -0.285 1.285 24 H -0.286 1.286 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.401 0.599 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.071 0.929 45 H -0.021 1.021 46 H -0.021 1.021 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 -1.277 -14.008 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.142 4.142 4 C -0.034 4.034 5 H 0.151 0.849 6 C 0.272 3.728 7 O -0.477 6.477 8 N -0.365 5.365 9 C -0.059 4.059 10 C -0.109 4.109 11 N -0.225 5.225 12 C -0.073 4.073 13 C -0.044 4.044 14 C -0.162 4.162 15 C -0.192 4.192 16 C 0.004 3.996 17 C -0.543 4.543 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.582 5.582 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.089 0.911 45 H -0.002 1.002 46 H -0.003 1.003 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.028 -1.563 -14.295 17.531 hybrid contribution -0.330 1.325 1.353 1.923 sum 9.698 -0.238 -12.942 16.174 Atomic orbital electron populations 1.21770 0.96268 1.01875 1.01081 1.21516 0.95252 0.94967 1.03698 1.21613 0.91824 0.98911 1.01818 1.21997 0.97081 0.87593 0.96775 0.84861 1.21701 0.79330 0.92742 0.78988 1.90694 1.57844 1.56812 1.42341 1.45642 1.33884 1.15717 1.41257 1.22358 0.99004 0.92244 0.92292 1.23094 0.88099 0.93975 1.05704 1.62641 1.04458 1.54441 1.00910 1.22478 0.98675 0.96066 0.90128 1.20362 0.96020 0.95293 0.92701 1.21601 1.00032 0.95151 0.99456 1.22127 0.94921 1.01098 1.01049 1.19029 0.93032 0.94546 0.92988 1.21633 1.21220 1.10192 1.01267 0.91319 1.25901 0.95487 0.97505 1.01298 1.70120 1.26837 1.32617 1.28603 0.85571 0.77957 0.79459 0.79127 1.18125 1.21097 1.21228 0.94594 0.92257 0.91978 0.90478 0.90659 0.93384 0.91036 0.76315 0.86797 0.91687 0.87997 0.86024 0.95038 0.91785 0.90536 0.94704 0.95023 0.92379 0.93990 0.91051 1.00247 1.00280 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.91 71.98 0.71 -3.00 16 2 C -0.12 -2.84 5.61 30.59 0.17 -2.67 16 3 C -0.10 -2.76 3.91 30.59 0.12 -2.64 16 4 C 0.08 1.84 2.46 44.03 0.11 1.95 16 5 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 6 C 0.49 13.30 6.97 87.68 0.61 13.91 16 7 O -0.60 -20.84 17.05 -3.04 -0.05 -20.89 16 8 N -0.71 -15.48 5.44 -466.08 -2.54 -18.02 16 9 C 0.07 1.13 6.12 86.47 0.53 1.66 16 10 C 0.02 0.33 5.41 86.24 0.47 0.80 16 11 N -0.50 -11.74 2.97 -875.49 -2.60 -14.34 16 12 C 0.05 1.69 2.97 86.30 0.26 1.94 16 13 C -0.04 -1.55 0.61 -52.18 -0.03 -1.58 16 14 C -0.11 -3.58 6.92 71.98 0.50 -3.08 16 15 C -0.14 -4.19 7.21 71.98 0.52 -3.67 16 16 C 0.04 2.07 3.99 29.85 0.12 2.19 16 17 C -0.50 -26.88 7.18 25.60 0.18 -26.70 16 18 H 0.07 3.48 6.16 -2.91 -0.02 3.46 16 19 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 20 N -0.94 -57.00 13.29 21.45 0.28 -56.71 16 21 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 25 H 0.03 0.99 8.14 -2.38 -0.02 0.98 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 2.07 4.53 -2.39 -0.01 2.06 16 30 H 0.05 1.51 5.85 -2.38 -0.01 1.50 16 31 H 0.07 1.94 7.78 -2.39 -0.02 1.92 16 32 H 0.40 7.92 8.84 -92.71 -0.82 7.10 16 33 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.36 5.03 -2.39 -0.01 1.35 16 35 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.12 2.06 4.56 -2.38 -0.01 2.05 16 37 H 0.03 1.02 5.24 -2.39 -0.01 1.01 16 38 H 0.06 2.28 4.76 -2.38 -0.01 2.27 16 39 H 0.08 2.13 7.33 -2.39 -0.02 2.12 16 40 H 0.03 1.29 6.62 -2.39 -0.02 1.28 16 41 H 0.03 1.12 6.54 -2.39 -0.02 1.11 16 42 H 0.06 1.52 4.82 -2.39 -0.01 1.51 16 43 H 0.04 1.57 6.39 -2.39 -0.02 1.55 16 44 H 0.07 1.80 6.53 -2.38 -0.02 1.79 16 45 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 46 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 47 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -67.80 336.85 2.01 -65.79 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.16 Total: 19.27 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.73 Total: -20.74 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -4.85 Total: -89.07 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -67.80 2.01 -65.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093771926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.051 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds