Wall clock time and date at job start Tue Mar 31 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46726 * 2 1 4 4 C 1.53003 * 109.47057 * 119.99545 * 2 1 3 5 5 C 1.50696 * 109.47322 * 300.00130 * 4 2 1 6 6 H 1.08002 * 120.00246 * 0.27557 * 5 4 2 7 7 C 1.37877 * 120.00111 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00094 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00041 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47051 * 89.99649 * 9 7 5 11 11 H 1.48497 * 109.47252 * 209.99678 * 9 7 5 12 12 H 1.48506 * 109.46815 * 329.99743 * 9 7 5 13 13 C 1.52992 * 109.47272 * 239.99769 * 2 1 3 14 14 N 1.46904 * 109.47291 * 54.59183 * 13 2 1 15 15 C 1.46844 * 111.00212 * 210.99207 * 14 13 2 16 16 C 1.53033 * 109.52473 * 174.15965 * 15 14 13 17 17 C 1.53115 * 109.28139 * 59.17671 * 16 15 14 18 18 C 1.53122 * 109.16268 * 302.35003 * 17 16 15 19 19 H 1.09006 * 109.50279 * 297.71142 * 18 17 16 20 20 C 1.52993 * 109.54084 * 177.61350 * 18 17 16 21 21 C 1.50697 * 109.47127 * 65.17241 * 20 18 17 22 22 N 1.34782 * 119.99943 * 180.02562 * 21 20 18 23 23 O 1.21280 * 120.00051 * 0.02562 * 21 20 18 24 24 C 1.46846 * 111.00063 * 86.77647 * 14 13 2 25 25 H 1.09005 * 109.47364 * 305.50743 * 1 2 3 26 26 H 1.08999 * 109.47329 * 65.51500 * 1 2 3 27 27 H 1.09008 * 109.47064 * 185.51314 * 1 2 3 28 28 H 1.09007 * 109.47066 * 193.21469 * 3 2 1 29 29 H 1.08992 * 109.47457 * 313.21649 * 3 2 1 30 30 H 1.08998 * 109.47045 * 73.22009 * 3 2 1 31 31 H 1.08999 * 109.47111 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47114 * 60.00277 * 4 2 1 33 33 H 0.97006 * 119.99879 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47461 * 174.59230 * 13 2 1 35 35 H 1.09002 * 109.47418 * 294.58956 * 13 2 1 36 36 H 1.08997 * 109.46092 * 294.17470 * 15 14 13 37 37 H 1.08996 * 109.46413 * 54.14264 * 15 14 13 38 38 H 1.09004 * 109.50449 * 299.23958 * 16 15 14 39 39 H 1.08992 * 109.50528 * 179.12100 * 16 15 14 40 40 H 1.09002 * 109.52902 * 182.44527 * 17 16 15 41 41 H 1.08996 * 109.57501 * 62.27744 * 17 16 15 42 42 H 1.09003 * 109.47301 * 185.17613 * 20 18 17 43 43 H 1.09000 * 109.46940 * 305.17285 * 20 18 17 44 44 H 0.97000 * 120.00039 * 0.02562 * 22 21 20 45 45 H 0.97002 * 119.99874 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.46456 * 305.85951 * 24 14 13 47 47 H 1.09003 * 109.45545 * 65.83646 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0107 2.4797 6 1 0.9131 0.8648 2.3806 7 6 1.8703 -0.4820 3.7320 8 7 1.4315 0.1377 4.8058 9 14 2.9443 -2.0008 3.9035 10 1 4.3719 -1.5949 3.9495 11 1 2.5927 -2.7168 5.1561 12 1 2.7219 -2.8981 2.7413 13 6 2.0400 -0.7213 -1.2491 14 7 1.4467 -0.1083 -2.4451 15 6 1.2750 -1.0998 -3.5146 16 6 0.5247 -0.4632 -4.6866 17 6 1.3198 0.7392 -5.2027 18 6 1.5264 1.7343 -4.0573 19 1 0.5586 2.0993 -3.7133 20 6 2.3711 2.9116 -4.5483 21 6 1.6070 3.6740 -5.5999 22 7 2.1583 4.7586 -6.1798 23 8 0.4960 3.3117 -5.9243 24 6 2.2477 1.0339 -2.9035 25 1 -0.3634 0.5969 0.8366 26 1 -0.3634 0.4259 -0.9352 27 1 -0.3633 -1.0230 0.0987 28 1 3.1043 1.4517 -0.2349 29 1 1.4976 2.0196 -0.7489 30 1 1.8813 1.8840 0.9839 31 1 3.1300 -0.7208 1.2496 32 1 1.6767 -1.7488 1.2494 33 1 1.6652 -0.1941 5.6869 34 1 3.1257 -0.6382 -1.2989 35 1 1.7580 -1.7731 -1.2020 36 1 2.2530 -1.4424 -3.8526 37 1 0.7045 -1.9477 -3.1356 38 1 -0.4589 -0.1328 -4.3526 39 1 0.4112 -1.1948 -5.4865 40 1 0.7680 1.2219 -6.0093 41 1 2.2886 0.4045 -5.5734 42 1 2.5948 3.5725 -3.7109 43 1 3.3019 2.5379 -4.9749 44 1 3.0471 5.0482 -5.9206 45 1 1.6663 5.2496 -6.8564 46 1 2.3835 1.7358 -2.0806 47 1 3.2211 0.6813 -3.2445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093809394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:07 Heat of formation + Delta-G solvation = -59.066006 kcal Electronic energy + Delta-G solvation = -23510.126481 eV Core-core repulsion = 20305.731072 eV Total energy + Delta-G solvation = -3204.395409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13549 -38.88247 -36.46170 -33.91699 -33.49505 -32.30329 -31.41977 -27.84645 -27.60665 -26.32464 -26.01050 -23.23998 -22.40090 -21.75960 -20.38919 -19.60548 -17.81392 -17.50774 -16.86690 -16.70916 -15.60620 -15.46409 -14.86717 -14.55993 -14.30877 -14.03471 -13.76831 -13.48956 -13.19914 -12.93079 -12.63836 -12.42987 -12.33790 -12.10830 -11.96674 -11.54306 -11.02570 -10.96545 -10.82696 -10.78622 -10.68377 -10.56725 -10.42835 -10.30657 -10.05428 -9.98145 -9.80966 -9.71960 -9.59640 -9.08120 -8.87127 -8.45970 -7.90839 -5.96327 -3.91864 2.44958 3.28418 3.34090 3.41996 3.45808 4.15504 4.51457 4.58160 4.77920 4.83450 5.03871 5.16708 5.32001 5.36887 5.43176 5.45711 5.51695 5.61747 5.66736 5.76521 5.86548 5.89592 5.97723 6.06224 6.08819 6.21120 6.23238 6.33675 6.38537 6.48694 6.52397 6.56353 6.70904 6.78531 6.90456 7.05858 7.18347 7.25213 7.27614 7.37837 7.45574 7.48193 7.59042 7.90491 8.05044 8.64719 9.10450 9.67118 11.16870 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003742 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.570728 B = 7479.969154 C = 7976.043015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.042 4.042 3 C -0.134 4.134 4 C -0.005 4.005 5 C -0.504 4.504 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.907 5.907 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.064 3.936 14 N -0.527 5.527 15 C 0.055 3.945 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.069 4.069 19 H 0.088 0.912 20 C -0.139 4.139 21 C 0.517 3.483 22 N -0.862 5.862 23 O -0.536 6.536 24 C 0.046 3.954 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.006 0.994 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.024 0.976 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.400 0.600 45 H 0.399 0.601 46 H 0.096 0.904 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 5.065 -22.345 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.043 4.043 3 C -0.191 4.191 4 C -0.043 4.043 5 C -0.542 4.542 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.064 4.064 14 N -0.251 5.251 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.088 4.088 19 H 0.106 0.894 20 C -0.180 4.180 21 C 0.303 3.697 22 N -0.425 5.425 23 O -0.413 6.413 24 C -0.082 4.082 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.228 0.772 45 H 0.229 0.771 46 H 0.114 0.886 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.247 4.818 -22.098 22.849 hybrid contribution 1.847 -0.788 -0.094 2.010 sum 5.094 4.030 -22.193 23.124 Atomic orbital electron populations 1.21582 0.94585 1.00562 1.00555 1.20348 0.96205 0.94989 0.92734 1.21990 0.98304 0.96682 1.02115 1.19647 0.95369 0.95781 0.93504 1.21150 1.31195 1.13209 0.88667 0.90389 1.25019 0.95903 0.96665 0.96050 1.69913 1.46295 1.40638 0.97796 0.86854 0.81100 0.84276 0.77465 1.20561 1.21616 1.19158 1.22345 0.96031 0.97951 0.90035 1.61807 1.50055 1.08356 1.04879 1.22130 0.98372 0.94676 0.92121 1.21532 0.99952 0.97026 0.96588 1.21728 0.99739 0.95906 0.98236 1.20935 0.99557 0.93244 0.95046 0.89396 1.21730 0.99846 0.98440 0.97975 1.20783 0.86579 0.80213 0.82160 1.43962 1.22043 1.31633 1.44910 1.90729 1.19998 1.67146 1.63385 1.22549 0.93500 0.94408 0.97766 0.92663 0.93091 0.94527 0.94695 0.93610 0.91064 0.97526 0.96864 0.92951 0.95004 0.91861 0.95761 0.91041 0.91016 0.92190 0.90338 0.93340 0.88488 0.89046 0.77150 0.77115 0.88644 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 7.95 37.16 0.30 -1.98 16 2 C -0.04 -0.82 0.61 -154.51 -0.09 -0.91 16 3 C -0.13 -2.47 6.87 37.16 0.26 -2.22 16 4 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 5 C -0.50 -13.97 8.08 -34.44 -0.28 -14.25 16 6 H 0.08 2.31 6.03 -52.49 -0.32 2.00 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.92 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.06 4.24 -3.83 -0.02 1.04 16 14 N -0.53 -7.62 3.40 -234.68 -0.80 -8.42 16 15 C 0.06 0.71 5.36 -3.84 -0.02 0.69 16 16 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 17 C -0.12 -1.36 5.00 -26.61 -0.13 -1.49 16 18 C -0.07 -0.79 1.99 -90.54 -0.18 -0.97 16 19 H 0.09 1.22 7.95 -51.93 -0.41 0.80 16 20 C -0.14 -1.18 5.18 -27.89 -0.14 -1.32 16 21 C 0.52 4.99 7.83 -10.98 -0.09 4.91 16 22 N -0.86 -4.93 8.87 31.22 0.28 -4.66 16 23 O -0.54 -7.47 14.82 5.56 0.08 -7.39 16 24 C 0.05 0.58 4.21 -3.83 -0.02 0.56 16 25 H 0.05 1.20 6.81 -51.93 -0.35 0.84 16 26 H 0.05 0.92 7.27 -51.93 -0.38 0.55 16 27 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.03 0.59 7.68 -51.92 -0.40 0.19 16 29 H 0.05 0.75 6.29 -51.93 -0.33 0.43 16 30 H 0.07 1.51 6.30 -51.93 -0.33 1.19 16 31 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 32 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.03 0.52 7.77 -51.93 -0.40 0.12 16 35 H 0.06 1.05 7.62 -51.93 -0.40 0.66 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.00 6.03 -51.93 -0.31 0.68 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.40 1.11 8.83 -40.82 -0.36 0.75 16 45 H 0.40 2.00 8.93 -40.82 -0.36 1.64 16 46 H 0.10 1.27 4.16 -51.93 -0.22 1.05 16 47 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -32.65 349.04 -8.13 -40.78 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.29 Total: 0.27 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.76 Total: -15.90 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.25 Total: -40.21 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.08 Total: -7.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.65 -8.13 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093809394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.285 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds