Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46726 * 2 1 4 4 C 1.53003 * 109.47057 * 119.99545 * 2 1 3 5 5 C 1.50696 * 109.47322 * 300.00130 * 4 2 1 6 6 H 1.08002 * 120.00246 * 0.27557 * 5 4 2 7 7 C 1.37877 * 120.00111 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00094 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00041 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47051 * 89.99649 * 9 7 5 11 11 H 1.48497 * 109.47252 * 209.99678 * 9 7 5 12 12 H 1.48506 * 109.46815 * 329.99743 * 9 7 5 13 13 C 1.52992 * 109.47272 * 239.99769 * 2 1 3 14 14 N 1.46904 * 109.47291 * 54.59183 * 13 2 1 15 15 C 1.46844 * 111.00212 * 210.99207 * 14 13 2 16 16 C 1.53033 * 109.52473 * 174.15965 * 15 14 13 17 17 C 1.53115 * 109.28139 * 59.17671 * 16 15 14 18 18 C 1.53122 * 109.16268 * 302.35003 * 17 16 15 19 19 H 1.09006 * 109.50279 * 297.71142 * 18 17 16 20 20 C 1.52993 * 109.54084 * 177.61350 * 18 17 16 21 21 C 1.50697 * 109.47127 * 65.17241 * 20 18 17 22 22 N 1.34782 * 119.99943 * 180.02562 * 21 20 18 23 23 O 1.21280 * 120.00051 * 0.02562 * 21 20 18 24 24 C 1.46846 * 111.00063 * 86.77647 * 14 13 2 25 25 H 1.09005 * 109.47364 * 305.50743 * 1 2 3 26 26 H 1.08999 * 109.47329 * 65.51500 * 1 2 3 27 27 H 1.09008 * 109.47064 * 185.51314 * 1 2 3 28 28 H 1.09007 * 109.47066 * 193.21469 * 3 2 1 29 29 H 1.08992 * 109.47457 * 313.21649 * 3 2 1 30 30 H 1.08998 * 109.47045 * 73.22009 * 3 2 1 31 31 H 1.08999 * 109.47111 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47114 * 60.00277 * 4 2 1 33 33 H 0.97006 * 119.99879 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47461 * 174.59230 * 13 2 1 35 35 H 1.09002 * 109.47418 * 294.58956 * 13 2 1 36 36 H 1.08997 * 109.46092 * 294.17470 * 15 14 13 37 37 H 1.08996 * 109.46413 * 54.14264 * 15 14 13 38 38 H 1.09004 * 109.50449 * 299.23958 * 16 15 14 39 39 H 1.08992 * 109.50528 * 179.12100 * 16 15 14 40 40 H 1.09002 * 109.52902 * 182.44527 * 17 16 15 41 41 H 1.08996 * 109.57501 * 62.27744 * 17 16 15 42 42 H 1.09003 * 109.47301 * 185.17613 * 20 18 17 43 43 H 1.09000 * 109.46940 * 305.17285 * 20 18 17 44 44 H 0.97000 * 120.00039 * 0.02562 * 22 21 20 45 45 H 0.97002 * 119.99874 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.46456 * 305.85951 * 24 14 13 47 47 H 1.09003 * 109.45545 * 65.83646 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0107 2.4797 6 1 0.9131 0.8648 2.3806 7 6 1.8703 -0.4820 3.7320 8 7 1.4315 0.1377 4.8058 9 14 2.9443 -2.0008 3.9035 10 1 4.3719 -1.5949 3.9495 11 1 2.5927 -2.7168 5.1561 12 1 2.7219 -2.8981 2.7413 13 6 2.0400 -0.7213 -1.2491 14 7 1.4467 -0.1083 -2.4451 15 6 1.2750 -1.0998 -3.5146 16 6 0.5247 -0.4632 -4.6866 17 6 1.3198 0.7392 -5.2027 18 6 1.5264 1.7343 -4.0573 19 1 0.5586 2.0993 -3.7133 20 6 2.3711 2.9116 -4.5483 21 6 1.6070 3.6740 -5.5999 22 7 2.1583 4.7586 -6.1798 23 8 0.4960 3.3117 -5.9243 24 6 2.2477 1.0339 -2.9035 25 1 -0.3634 0.5969 0.8366 26 1 -0.3634 0.4259 -0.9352 27 1 -0.3633 -1.0230 0.0987 28 1 3.1043 1.4517 -0.2349 29 1 1.4976 2.0196 -0.7489 30 1 1.8813 1.8840 0.9839 31 1 3.1300 -0.7208 1.2496 32 1 1.6767 -1.7488 1.2494 33 1 1.6652 -0.1941 5.6869 34 1 3.1257 -0.6382 -1.2989 35 1 1.7580 -1.7731 -1.2020 36 1 2.2530 -1.4424 -3.8526 37 1 0.7045 -1.9477 -3.1356 38 1 -0.4589 -0.1328 -4.3526 39 1 0.4112 -1.1948 -5.4865 40 1 0.7680 1.2219 -6.0093 41 1 2.2886 0.4045 -5.5734 42 1 2.5948 3.5725 -3.7109 43 1 3.3019 2.5379 -4.9749 44 1 3.0471 5.0482 -5.9206 45 1 1.6663 5.2496 -6.8564 46 1 2.3835 1.7358 -2.0806 47 1 3.2211 0.6813 -3.2445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093809394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = -82.085346 kcal Electronic energy + Delta-G solvation = -23511.124674 eV Core-core repulsion = 20305.731072 eV Total energy + Delta-G solvation = -3205.393603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00569 -39.93696 -37.85866 -34.87143 -34.58776 -33.96766 -32.59243 -29.57773 -28.79210 -27.68742 -27.34587 -24.79695 -23.39001 -23.13637 -21.17999 -20.53217 -19.40049 -18.83355 -18.12559 -17.59061 -16.75582 -16.26484 -16.19853 -15.91679 -15.61874 -15.37445 -15.01138 -14.69342 -14.48872 -14.17708 -14.02918 -13.96461 -13.61225 -13.44955 -13.01575 -12.89735 -12.74611 -12.38242 -12.24713 -12.12788 -12.00634 -11.91326 -11.72518 -11.60972 -11.48244 -11.25157 -11.19075 -10.87116 -10.83589 -10.67232 -10.57362 -10.43114 -9.02559 -8.19107 -6.19030 1.37003 1.39494 1.50521 1.74580 2.41790 2.66470 3.11474 3.16000 3.81864 3.93458 4.01279 4.12435 4.25228 4.27959 4.29623 4.43029 4.57293 4.60623 4.62605 4.71255 4.74976 4.78774 4.83316 4.91018 4.98802 5.01870 5.05245 5.10448 5.15558 5.21308 5.24341 5.30612 5.43206 5.48192 5.50573 5.58267 5.60868 5.70105 5.81238 5.88427 5.99317 6.28833 6.38382 6.47320 6.55714 6.88459 7.43159 7.45489 8.97298 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003742 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.570728 B = 7479.969154 C = 7976.043015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.043 4.043 3 C -0.124 4.124 4 C -0.002 4.002 5 C -0.501 4.501 6 H 0.042 0.958 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.942 3.058 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.249 1.249 13 C 0.075 3.925 14 N -0.541 5.541 15 C 0.058 3.942 16 C -0.110 4.110 17 C -0.113 4.113 18 C -0.064 4.064 19 H 0.057 0.943 20 C -0.135 4.135 21 C 0.513 3.487 22 N -0.842 5.842 23 O -0.588 6.588 24 C 0.048 3.952 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.417 0.583 45 H 0.404 0.596 46 H 0.089 0.911 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 4.309 -24.633 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 C -0.181 4.181 4 C -0.040 4.040 5 C -0.539 4.539 6 H 0.060 0.940 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.766 3.234 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.173 1.173 13 C -0.053 4.053 14 N -0.265 5.265 15 C -0.070 4.070 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.084 4.084 19 H 0.076 0.924 20 C -0.175 4.175 21 C 0.299 3.701 22 N -0.406 5.406 23 O -0.468 6.468 24 C -0.080 4.080 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.249 0.751 45 H 0.235 0.765 46 H 0.107 0.893 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.623 4.098 -24.420 25.392 hybrid contribution 1.057 -0.438 0.576 1.281 sum 6.680 3.660 -23.844 25.031 Atomic orbital electron populations 1.21470 0.95176 0.99707 0.99887 1.20302 0.95681 0.95554 0.92828 1.21881 0.99690 0.96022 1.00492 1.19600 0.95526 0.95422 0.93469 1.21432 1.29849 1.12110 0.90536 0.93954 1.25934 0.97722 1.00186 0.95738 1.70074 1.48478 1.42851 0.98431 0.85784 0.79389 0.80352 0.77847 1.19390 1.21645 1.17314 1.22074 0.96393 0.97441 0.89367 1.61704 1.50542 1.09206 1.04998 1.22135 0.99004 0.94194 0.91682 1.21508 0.98951 0.97610 0.96733 1.21664 1.00145 0.95510 0.97750 1.20824 0.98591 0.94261 0.94694 0.92414 1.21711 0.99938 0.97525 0.98297 1.21022 0.86003 0.80808 0.82260 1.43799 1.22648 1.30211 1.43960 1.90718 1.22182 1.68749 1.65138 1.22543 0.94018 0.93604 0.97825 0.95839 0.91584 0.94928 0.92933 0.91746 0.94847 0.96857 0.97089 0.92959 0.94070 0.91820 0.94577 0.91288 0.92871 0.90620 0.91701 0.91786 0.86861 0.86378 0.75143 0.76518 0.89298 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.17 7.95 71.98 0.57 -3.60 16 2 C -0.04 -1.64 0.61 -52.18 -0.03 -1.67 16 3 C -0.12 -4.49 6.87 71.98 0.49 -3.99 16 4 C 0.00 -0.11 3.11 29.85 0.09 -0.01 16 5 C -0.50 -28.41 8.08 25.60 0.21 -28.20 16 6 H 0.04 2.65 6.03 -2.91 -0.02 2.63 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.96 -60.62 13.96 21.45 0.30 -60.32 16 9 Si 0.94 44.84 27.47 68.60 1.88 46.72 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 13 C 0.08 2.30 4.24 86.30 0.37 2.67 16 14 N -0.54 -14.39 3.40 -896.39 -3.04 -17.44 16 15 C 0.06 1.33 5.36 86.32 0.46 1.79 16 16 C -0.11 -2.40 6.09 30.64 0.19 -2.22 16 17 C -0.11 -2.36 5.00 30.67 0.15 -2.21 16 18 C -0.06 -1.35 1.99 -10.74 -0.02 -1.37 16 19 H 0.06 1.57 7.95 -2.38 -0.02 1.56 16 20 C -0.13 -1.89 5.18 29.84 0.15 -1.74 16 21 C 0.51 8.99 7.83 87.66 0.69 9.68 16 22 N -0.84 -7.63 8.87 -173.53 -1.54 -9.17 16 23 O -0.59 -16.14 14.82 -3.03 -0.04 -16.19 16 24 C 0.05 1.07 4.21 86.33 0.36 1.43 16 25 H 0.02 1.04 6.81 -2.38 -0.02 1.02 16 26 H 0.07 2.39 7.27 -2.39 -0.02 2.37 16 27 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.05 1.69 7.68 -2.38 -0.02 1.67 16 29 H 0.06 2.07 6.29 -2.39 -0.02 2.05 16 30 H 0.03 1.44 6.30 -2.39 -0.02 1.43 16 31 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 32 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 33 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 34 H 0.04 1.20 7.77 -2.39 -0.02 1.18 16 35 H 0.06 1.95 7.62 -2.39 -0.02 1.93 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 1.62 7.90 -2.39 -0.02 1.60 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.58 6.03 -2.39 -0.01 1.57 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.42 0.98 8.83 -92.71 -0.82 0.17 16 45 H 0.40 3.27 8.93 -92.71 -0.83 2.44 16 46 H 0.09 2.11 4.16 -2.39 -0.01 2.10 16 47 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -72.89 349.04 0.96 -71.93 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.74 Total: 13.46 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.15 Total: -29.00 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -4.28 Total: -86.92 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.04 Total: -16.19 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -72.89 0.96 -71.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093809394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.160 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds