Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47251 * 2 1 4 4 C 1.53003 * 109.46973 * 239.99658 * 2 1 3 5 5 C 1.50704 * 109.46845 * 60.00190 * 4 2 1 6 6 H 1.08001 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00002 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00305 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99856 * 0.02562 * 7 5 4 10 10 H 1.48490 * 109.47263 * 89.99660 * 9 7 5 11 11 H 1.48502 * 109.46759 * 210.00023 * 9 7 5 12 12 H 1.48504 * 109.47295 * 329.99393 * 9 7 5 13 13 C 1.53005 * 109.46975 * 119.99895 * 2 1 3 14 14 N 1.46893 * 109.47342 * 295.55223 * 13 2 1 15 15 C 1.46854 * 110.99837 * 86.84331 * 14 13 2 16 16 C 1.53033 * 109.51234 * 185.84447 * 15 14 13 17 17 C 1.53117 * 109.28155 * 300.80516 * 16 15 14 18 18 C 1.53116 * 109.15200 * 57.67085 * 17 16 15 19 19 H 1.08995 * 109.53745 * 62.30275 * 18 17 16 20 20 C 1.53003 * 109.50142 * 182.40235 * 18 17 16 21 21 C 1.50697 * 109.46885 * 294.80117 * 20 18 17 22 22 N 1.34783 * 119.99601 * 180.02562 * 21 20 18 23 23 O 1.21281 * 120.00482 * 359.97438 * 21 20 18 24 24 C 1.46846 * 111.00268 * 211.05062 * 14 13 2 25 25 H 1.09007 * 109.46583 * 311.30796 * 1 2 3 26 26 H 1.09002 * 109.46939 * 71.30305 * 1 2 3 27 27 H 1.08999 * 109.47370 * 191.31461 * 1 2 3 28 28 H 1.09009 * 109.46789 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47179 * 299.99683 * 3 2 1 30 30 H 1.08996 * 109.47122 * 60.00427 * 3 2 1 31 31 H 1.08997 * 109.47171 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.47441 * 300.00540 * 4 2 1 33 33 H 0.97006 * 120.00507 * 180.02562 * 8 7 5 34 34 H 1.09009 * 109.47067 * 175.55050 * 13 2 1 35 35 H 1.09005 * 109.46792 * 55.55617 * 13 2 1 36 36 H 1.09002 * 109.46178 * 305.85156 * 15 14 13 37 37 H 1.08998 * 109.46337 * 65.83360 * 15 14 13 38 38 H 1.09003 * 109.50242 * 60.75787 * 16 15 14 39 39 H 1.09004 * 109.50344 * 180.87418 * 16 15 14 40 40 H 1.09008 * 109.53167 * 297.76774 * 17 16 15 41 41 H 1.08999 * 109.57617 * 177.60063 * 17 16 15 42 42 H 1.08998 * 109.47376 * 54.80759 * 20 18 17 43 43 H 1.09003 * 109.46812 * 174.80547 * 20 18 17 44 44 H 0.97005 * 120.00270 * 359.97438 * 22 21 20 45 45 H 0.97001 * 119.99782 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.46051 * 294.18026 * 24 14 13 47 47 H 1.09000 * 109.45756 * 54.14340 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8710 -0.4817 -3.7319 8 7 1.4331 0.1385 -4.8057 9 14 2.9449 -2.0005 -3.9033 10 1 2.0864 -3.2112 -3.9492 11 1 3.7373 -1.9077 -5.1558 12 1 3.8651 -2.0899 -2.7411 13 6 2.0400 -0.7213 1.2493 14 7 1.6400 0.0304 2.4463 15 6 0.2983 -0.3661 2.8927 16 6 -0.1431 0.5353 4.0480 17 6 0.8571 0.4067 5.2002 18 6 2.2543 0.7787 4.6964 19 1 2.2587 1.8180 4.3682 20 6 3.2701 0.5954 5.8259 21 6 2.9753 1.5768 6.9307 22 7 3.7465 1.5990 8.0359 23 8 2.0447 2.3474 6.8251 24 6 2.6264 -0.1295 3.5223 25 1 -0.3633 0.6784 0.7720 26 1 -0.3633 0.3294 -0.9735 27 1 -0.3634 -1.0077 0.2016 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1299 -0.7218 -1.2490 32 1 1.6766 -1.7490 -1.2493 33 1 1.6674 -0.1929 -5.6868 34 1 3.1271 -0.7908 1.2103 35 1 1.6130 -1.7234 1.2900 36 1 -0.4041 -0.2660 2.0653 37 1 0.3189 -1.4029 3.2284 38 1 -0.1770 1.5707 3.7092 39 1 -1.1325 0.2309 4.3895 40 1 0.8629 -0.6206 5.5649 41 1 0.5707 1.0787 6.0092 42 1 3.2019 -0.4207 6.2145 43 1 4.2753 0.7710 5.4425 44 1 4.4910 0.9829 8.1203 45 1 3.5565 2.2305 8.7473 46 1 2.6360 -1.1676 3.8547 47 1 3.6149 0.1422 3.1519 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093809395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = -82.066576 kcal Electronic energy + Delta-G solvation = -23363.898539 eV Core-core repulsion = 20158.505750 eV Total energy + Delta-G solvation = -3205.392789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98640 -39.95768 -37.88262 -34.88533 -34.58571 -33.78902 -32.76939 -29.73926 -28.51884 -27.76724 -27.33968 -24.82744 -23.41289 -23.11745 -21.17927 -20.53897 -19.39689 -18.83630 -18.13986 -17.55708 -16.74969 -16.27691 -16.19239 -15.93896 -15.62189 -15.35367 -15.03887 -14.75248 -14.41436 -14.18039 -14.14730 -13.77689 -13.69450 -13.47320 -13.03518 -12.77935 -12.74908 -12.40479 -12.29047 -12.18911 -12.01398 -11.89679 -11.72919 -11.61147 -11.44804 -11.25493 -11.11066 -10.91261 -10.85568 -10.67453 -10.59531 -10.41607 -9.02370 -8.19135 -6.19345 1.37543 1.39294 1.50690 1.75030 2.41899 2.66337 3.12138 3.15890 3.82668 3.91491 4.03082 4.12332 4.22995 4.27769 4.30729 4.42017 4.57329 4.61021 4.64620 4.71045 4.74194 4.80332 4.80954 4.89886 4.99416 5.02028 5.03466 5.10114 5.14595 5.21073 5.24944 5.31295 5.42305 5.48688 5.50514 5.57605 5.60028 5.69506 5.80378 5.87623 5.99299 6.28971 6.38654 6.47530 6.56331 6.88219 7.42808 7.46047 8.97386 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.003429 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.500961 B = 8162.683563 C = 8437.698643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.043 4.043 3 C -0.104 4.104 4 C -0.002 4.002 5 C -0.502 4.502 6 H 0.041 0.959 7 C -0.002 4.002 8 N -0.957 5.957 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.246 1.246 13 C 0.075 3.925 14 N -0.540 5.540 15 C 0.041 3.959 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.064 4.064 19 H 0.058 0.942 20 C -0.132 4.132 21 C 0.511 3.489 22 N -0.842 5.842 23 O -0.589 6.589 24 C 0.063 3.937 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.418 0.582 45 H 0.404 0.596 46 H 0.042 0.958 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -3.825 27.889 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.043 4.043 3 C -0.162 4.162 4 C -0.040 4.040 5 C -0.540 4.540 6 H 0.059 0.941 7 C -0.197 4.197 8 N -0.600 5.600 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.170 1.170 13 C -0.052 4.052 14 N -0.264 5.264 15 C -0.086 4.086 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.084 4.084 19 H 0.077 0.923 20 C -0.172 4.172 21 C 0.298 3.702 22 N -0.406 5.406 23 O -0.469 6.469 24 C -0.065 4.065 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.249 0.751 45 H 0.234 0.766 46 H 0.060 0.940 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.804 -2.945 27.369 28.132 hybrid contribution 0.439 -1.102 -0.424 1.260 sum 6.244 -4.047 26.945 27.953 Atomic orbital electron populations 1.21890 0.95617 1.00292 1.00325 1.20300 0.95290 0.95746 0.92986 1.21456 0.99244 0.95820 0.99641 1.19590 0.95757 0.95271 0.93376 1.21442 1.29958 1.12002 0.90607 0.94073 1.25959 0.97680 1.00375 0.95697 1.70077 1.48477 1.42947 0.98450 0.85759 0.79674 0.79805 0.77977 1.19620 1.21574 1.16977 1.22077 0.99744 0.94148 0.89267 1.61706 1.02505 1.57251 1.04954 1.22515 0.91150 0.96591 0.98378 1.21516 0.98818 0.99685 0.94929 1.21663 0.94573 1.01067 0.97735 1.20824 0.94503 0.99666 0.93364 0.92315 1.21698 1.01922 0.99981 0.93602 1.21070 0.81143 0.83857 0.84165 1.43804 1.34485 1.41937 1.20404 1.90729 1.32033 1.43420 1.80724 1.22179 0.95490 0.97882 0.90920 0.91828 0.94964 0.93479 0.94322 0.95846 0.91959 0.96677 0.97032 0.92953 0.91146 0.94450 0.89963 0.94887 0.92957 0.91006 0.91818 0.91746 0.86396 0.86466 0.75114 0.76565 0.93965 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 6.83 71.98 0.49 -4.25 16 2 C -0.04 -1.64 0.60 -52.18 -0.03 -1.67 16 3 C -0.10 -4.12 7.99 71.98 0.58 -3.55 16 4 C 0.00 -0.10 3.11 29.85 0.09 0.00 16 5 C -0.50 -28.67 8.05 25.60 0.21 -28.46 16 6 H 0.04 2.60 5.99 -2.91 -0.02 2.58 16 7 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 8 N -0.96 -61.10 13.96 21.44 0.30 -60.80 16 9 Si 0.94 44.89 27.47 68.60 1.88 46.78 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 13 C 0.08 2.30 4.24 86.31 0.37 2.67 16 14 N -0.54 -14.35 3.52 -896.34 -3.16 -17.50 16 15 C 0.04 1.03 4.89 86.32 0.42 1.45 16 16 C -0.11 -2.61 6.09 30.64 0.19 -2.42 16 17 C -0.11 -2.37 5.00 30.67 0.15 -2.22 16 18 C -0.06 -1.26 2.00 -10.74 -0.02 -1.29 16 19 H 0.06 1.52 7.95 -2.39 -0.02 1.50 16 20 C -0.13 -1.59 5.18 29.85 0.15 -1.43 16 21 C 0.51 8.28 7.83 87.66 0.69 8.97 16 22 N -0.84 -6.46 8.87 -173.53 -1.54 -8.00 16 23 O -0.59 -15.71 14.82 -3.03 -0.04 -15.76 16 24 C 0.06 1.29 4.64 86.33 0.40 1.69 16 25 H 0.06 2.19 6.20 -2.38 -0.01 2.17 16 26 H 0.03 1.45 6.33 -2.39 -0.02 1.43 16 27 H 0.05 1.65 7.75 -2.39 -0.02 1.63 16 28 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.02 1.05 6.62 -2.39 -0.02 1.03 16 30 H 0.06 2.26 7.49 -2.39 -0.02 2.24 16 31 H 0.01 0.69 7.20 -2.39 -0.02 0.68 16 32 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 33 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 34 H 0.07 2.05 7.62 -2.38 -0.02 2.03 16 35 H 0.04 1.11 7.80 -2.38 -0.02 1.09 16 36 H 0.08 2.26 4.15 -2.39 -0.01 2.25 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 1.58 6.03 -2.39 -0.01 1.57 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.42 0.29 8.83 -92.70 -0.82 -0.53 16 45 H 0.40 2.81 8.93 -92.71 -0.83 1.99 16 46 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 1.52 7.90 -2.39 -0.02 1.50 16 Total: -1.00 -73.89 349.10 0.85 -73.05 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.74 Total: 12.40 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.14 Total: -30.17 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -4.40 Total: -86.30 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.04 Total: -15.76 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -73.89 0.85 -73.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093809395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.019 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds