Wall clock time and date at job start Tue Mar 31 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47284 * 2 1 4 4 C 1.52995 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47131 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46634 * 304.99798 * 5 4 3 7 7 C 1.52998 * 109.47039 * 64.99708 * 5 4 3 8 8 C 1.53002 * 109.47012 * 185.65227 * 7 5 4 9 9 C 1.50699 * 109.46940 * 184.99881 * 5 4 3 10 10 O 1.21280 * 120.00078 * 261.20344 * 9 5 4 11 11 N 1.34780 * 120.00020 * 81.20815 * 9 5 4 12 12 C 1.46973 * 120.59070 * 4.33092 * 11 9 5 13 13 C 1.53806 * 108.39832 * 124.75872 * 12 11 9 14 14 N 1.46964 * 108.58272 * 49.62960 * 13 12 11 15 15 C 1.36941 * 120.59015 * 124.62271 * 14 13 12 16 16 H 1.07996 * 120.00068 * 321.27678 * 15 14 13 17 17 C 1.38815 * 119.99323 * 141.27643 * 15 14 13 18 18 N 1.31618 * 120.00358 * 355.63054 * 17 15 14 19 19 Si 1.86808 * 119.99420 * 175.62691 * 17 15 14 20 20 H 1.48491 * 109.47335 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46832 * 120.00315 * 19 17 15 22 22 H 1.48500 * 109.46807 * 239.99538 * 19 17 15 23 23 C 1.46967 * 118.81381 * 304.65141 * 14 13 12 24 24 C 1.46955 * 120.59474 * 184.60383 * 11 9 5 25 25 H 1.08995 * 109.47232 * 299.99746 * 1 2 3 26 26 H 1.09000 * 109.47289 * 59.99897 * 1 2 3 27 27 H 1.09004 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47265 * 240.00429 * 2 1 3 29 29 H 1.09000 * 109.47289 * 120.00103 * 2 1 3 30 30 H 1.09000 * 109.47041 * 300.00254 * 3 2 1 31 31 H 1.09005 * 109.46619 * 60.00033 * 3 2 1 32 32 H 1.09005 * 109.46978 * 299.99770 * 4 3 2 33 33 H 1.08995 * 109.47232 * 60.00254 * 4 3 2 34 34 H 1.08997 * 109.47248 * 305.65484 * 7 5 4 35 35 H 1.09003 * 109.47375 * 65.65798 * 7 5 4 36 36 H 1.09001 * 109.47280 * 304.55182 * 8 7 5 37 37 H 1.09003 * 109.46839 * 64.54664 * 8 7 5 38 38 H 1.08998 * 109.47369 * 184.54812 * 8 7 5 39 39 H 1.08997 * 109.60543 * 244.54051 * 12 11 9 40 40 H 1.08999 * 109.61010 * 5.04550 * 12 11 9 41 41 H 1.09011 * 109.74042 * 289.84334 * 13 12 11 42 42 H 1.09000 * 109.53388 * 169.29763 * 13 12 11 43 43 H 0.97000 * 119.99667 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.60921 * 295.47624 * 23 14 13 45 45 H 1.08995 * 109.74787 * 175.05228 * 23 14 13 46 46 H 1.09007 * 109.61148 * 354.95038 * 24 11 9 47 47 H 1.09003 * 109.60878 * 115.46363 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 3.6757 3.5683 1.3079 8 6 4.0612 5.0479 1.2507 9 6 5.5818 2.8869 -0.1244 10 8 6.2721 3.0174 0.8642 11 7 6.1580 2.7436 -1.3344 12 6 5.3362 2.6796 -2.5513 13 6 5.8212 3.7693 -3.5224 14 7 7.2820 3.6682 -3.6480 15 6 7.8672 3.5216 -4.8774 16 1 7.4041 2.8943 -5.6246 17 6 9.0558 4.1794 -5.1629 18 7 9.5753 5.0108 -4.2848 19 14 9.9179 3.8844 -6.7937 20 1 9.1349 2.9131 -7.5990 21 1 10.0274 5.1666 -7.5348 22 1 11.2766 3.3396 -6.5438 23 6 8.1033 3.7265 -2.4307 24 6 7.6186 2.6425 -1.4601 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9337 0.9286 0.8892 33 1 3.9329 0.9289 -0.8908 34 1 2.5983 3.4786 1.4468 35 1 4.1906 3.0908 2.1416 36 1 5.1251 5.1380 1.0313 37 1 3.4857 5.5432 0.4685 38 1 3.8473 5.5165 2.2112 39 1 5.4440 1.6988 -3.0143 40 1 4.2908 2.8535 -2.2963 41 1 5.5545 4.7528 -3.1352 42 1 5.3589 3.6198 -4.4981 43 1 10.4057 5.4706 -4.4846 44 1 7.9992 4.7068 -1.9658 45 1 9.1489 3.5506 -2.6832 46 1 8.0810 2.7919 -0.4843 47 1 7.8853 1.6590 -1.8473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109444074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:54 Heat of formation + Delta-G solvation = -41.599776 kcal Electronic energy + Delta-G solvation = -23539.565525 eV Core-core repulsion = 20335.927508 eV Total energy + Delta-G solvation = -3203.638017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98198 -37.11865 -36.29776 -33.97111 -33.83731 -31.19108 -30.71733 -30.14394 -27.38786 -26.33477 -23.75555 -23.02581 -22.87580 -21.96192 -21.02512 -19.86841 -18.32011 -17.31802 -16.20222 -15.67249 -15.39693 -14.96153 -14.81449 -14.08078 -13.91173 -13.86644 -13.69614 -13.62578 -13.23914 -13.18533 -12.86339 -12.67012 -12.38560 -12.02707 -11.75122 -11.56186 -11.32566 -11.25274 -11.15300 -11.01850 -10.90776 -10.77028 -10.66487 -10.55995 -10.48132 -10.40513 -10.20088 -10.07423 -9.81068 -9.12521 -8.56321 -8.17292 -6.55266 -5.85556 -3.43871 3.06093 3.32211 3.39745 3.41537 3.52086 4.41599 4.58496 4.67011 4.78467 4.91443 5.01360 5.12325 5.19150 5.28562 5.34190 5.41160 5.48037 5.54927 5.62900 5.64253 5.71587 5.77509 5.82269 5.82841 5.87139 5.91095 5.92511 6.04760 6.06601 6.16707 6.19810 6.25614 6.34531 6.39453 6.42720 6.45876 6.55505 6.74226 6.92008 7.30706 7.57591 7.73624 7.99677 8.44091 8.66872 9.14658 9.72387 10.35655 11.21229 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.004046 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.094377 B = 6918.573157 C = 7642.506207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.108 4.108 5 C -0.109 4.109 6 H 0.092 0.908 7 C -0.105 4.105 8 C -0.154 4.154 9 C 0.514 3.486 10 O -0.555 6.555 11 N -0.596 5.596 12 C 0.087 3.913 13 C 0.131 3.869 14 N -0.590 5.590 15 C -0.263 4.263 16 H 0.063 0.937 17 C 0.013 3.987 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.164 3.836 24 C 0.085 3.915 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.066 0.934 43 H 0.256 0.744 44 H 0.023 0.977 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.498 -6.652 7.950 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.146 4.146 5 C -0.130 4.130 6 H 0.110 0.890 7 C -0.143 4.143 8 C -0.211 4.211 9 C 0.302 3.698 10 O -0.434 6.434 11 N -0.328 5.328 12 C -0.037 4.037 13 C 0.004 3.996 14 N -0.313 5.313 15 C -0.393 4.393 16 H 0.081 0.919 17 C -0.187 4.187 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.215 1.215 23 C 0.037 3.963 24 C -0.038 4.038 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.948 -6.473 8.421 18.337 hybrid contribution 0.558 -0.029 -1.000 1.146 sum -14.390 -6.502 7.421 17.447 Atomic orbital electron populations 1.21773 0.96006 1.01429 1.01762 1.21536 0.95690 0.97020 1.02086 1.21677 0.94799 0.96778 1.02381 1.21516 0.95647 0.94569 1.02860 1.21436 0.92956 0.98125 1.00496 0.89024 1.21413 1.00440 0.95925 0.96479 1.21796 1.02538 0.95701 1.01106 1.20513 0.90174 0.76221 0.82888 1.90623 1.64972 1.50880 1.36948 1.48069 1.08110 1.70792 1.05851 1.22524 0.93780 1.01174 0.86270 1.21386 0.87277 0.94401 0.96543 1.43860 0.99259 1.85256 1.02941 1.19145 1.06349 1.22810 0.90999 0.91925 1.25416 0.99919 0.95798 0.97537 1.69950 1.20525 1.29003 1.34691 0.86199 0.79322 0.77547 0.83542 1.20094 1.21472 1.21473 1.21104 0.96988 0.93287 0.84887 1.22498 0.78890 1.01112 1.01335 0.92847 0.92727 0.92961 0.91972 0.92113 0.91770 0.91545 0.91457 0.91405 0.91526 0.91009 0.91934 0.93178 0.92921 0.91813 0.90764 0.95937 0.91595 0.93412 0.95883 0.88985 0.90308 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.02 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.04 4.98 -26.73 -0.13 -1.17 16 4 C -0.11 -1.18 4.55 -26.73 -0.12 -1.31 16 5 C -0.11 -1.41 1.35 -91.77 -0.12 -1.54 16 6 H 0.09 1.12 6.29 -51.93 -0.33 0.79 16 7 C -0.10 -1.28 4.95 -26.73 -0.13 -1.41 16 8 C -0.15 -2.01 9.75 37.16 0.36 -1.65 16 9 C 0.51 8.98 6.10 -10.98 -0.07 8.92 16 10 O -0.56 -11.44 14.52 5.56 0.08 -11.36 16 11 N -0.60 -10.92 2.94 -172.22 -0.51 -11.42 16 12 C 0.09 1.43 6.03 -3.36 -0.02 1.41 16 13 C 0.13 2.63 6.69 -3.37 -0.02 2.61 16 14 N -0.59 -14.50 2.93 -171.77 -0.50 -15.00 16 15 C -0.26 -7.02 9.50 -15.06 -0.14 -7.17 16 16 H 0.06 1.64 7.83 -52.49 -0.41 1.22 16 17 C 0.01 0.36 5.15 -17.43 -0.09 0.27 16 18 N -0.90 -25.78 11.24 55.49 0.62 -25.16 16 19 Si 0.90 21.17 29.56 -169.99 -5.02 16.15 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.16 3.95 5.41 -3.60 -0.02 3.93 16 24 C 0.09 1.75 6.60 -3.60 -0.02 1.72 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 6.45 -51.93 -0.33 0.22 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 34 H 0.07 0.66 6.32 -51.93 -0.33 0.33 16 35 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 36 H 0.06 1.01 6.70 -51.93 -0.35 0.66 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.98 5.38 -51.93 -0.28 0.70 16 41 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 46 H 0.08 1.63 6.99 -51.93 -0.36 1.27 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -30.34 359.23 -8.80 -39.14 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.56 Total: -0.49 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.32 Total: 2.73 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.39 Total: -51.58 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.34 -8.80 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.460 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds